mRNA_P-wetherbeei_contig6877.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6877.1.1
Unique NamemRNA_P-wetherbeei_contig6877.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6877.1.1 vs. uniprot
Match: D8LS90_ECTSI (eIF3_p135 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS90_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 1.360e-59
Identity = 258/743 (34.72%), Postives = 340/743 (45.76%), Query Frame = 1
Query:    1 SLPGIIGRSPQVESRLWLVLGPSGSVGGLKLGPSHGRA--HICDGMMPLQLLPALLRCTATVLTAPCLRRAQEGGAVPRLTAADVDSAGIAAPSATG-CRFKGA---TAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHALALAKADVLSEAAEQAEAALTT--LLPPAQDG---GGALPGGLRPPSASGFPASTTAFASGSPAAAAMHQAPAY--LLVGGVALLSVLRAEQQRGSAAAGTLSCARLSLRRALLNGNXXXXXXXXXXXDGGGRGFAD-GGWRSDGSVSPPRRGEXXXXXPGELLWLWRVLQVLFP-------SSGDGQSMTVWGSHPLVPTVALLLDCAAKGSVSSSSADGSH----SCGSDGPETEPATAAAAPARPEWLRRLLETTVFPSSQL---------------GPAGIAHAAEPAL-------RMTLHVLRNSGLAAGADAAAW---QTPCS-----LLLPTALFEWARPSLDAAADLALASVASVEAAPSPAASRRR----EAASAFMHGGSAVLLEAAKQVERDALQAQGRVFIDGKVR--TREGAAFSRTALATASSRSRLDLFGVRLPAEWVVRHVACGYRHAALLTASGALLTVGLGEAGRLGHGDEEDAPAPRIVRALLDGRRRVVAAACGRQHTMCVAADGAVFGFGWGEGGCLGLGDVGSVLLPQAVPSVDSGALGAIGARVVDVACGLEHSLLLTSAGQLLACGHGTGGRLG 2046
            S+ G  G   +VESRLWL+LGP G+VGGL+L     R+  H+C G+  L LLPAL R    +LTA  +R+ QE G V R+  + VD      P+A G  RFKG     AA                    XXXXXXXXXXXX  +  +       E  E+AE A T   +L P  D    GG L    R  + +    S   +A G+P +A      A   LL G +  +    A ++ G A  G        +   L  G              GG+G  + G   S G+ + P          G LLWLWRVLQV FP       ++   +   +WGSHPLVP +A LL  A K S   S A+       S    G   E           +WL   L+T  FP + L               G    A  AE  L       R+   +L+  G         W    + CS     LL P   F W            L ++     AP P A         A    + GG    L   + V        GR+++DG+V   + E  A  RT    + +   L L  +R+P EW V  VACG+RH+AL+TASG +LT+G GE GRLGHGDEEDA  P++VRAL D ++ VV A CGR+HT+   A G+V+ +GWGEGG LGLG+V +VL P+ V   D+     +G R+  V+CG EHSL ++ AG+L A G   GGRLG
Sbjct: 1033 SMAGEAGLFWEVESRLWLLLGPFGAVGGLELDEEEARSSVHLCRGLSGLHLLPALTRNLGILLTARAIRKLQESGVVSRIKLSHVDHR-TGGPAAVGPARFKGLGEEAAAVKRRLRDKCRRRWVATRGSAXXXXXXXXXXXXXRSPGIGWTGATGE--ERAEYAATAEYVLAPFVDASGKGGDLSYARREIAEAHMAVSVADWAEGNPISAKREAELALRALLEGKLGYVDKDEALRREGRAPRGGGGEGAEGVPVPL--GLCVAAAGMLLTACRGGQGGKNLGSNSSSGAAAAPGERLSGKDGEGALLWLWRVLQVHFPGRSSTLGTASGPREAPLWGSHPLVPAIACLL--AGKTSADLSEAEAGSMLLASLKKRGSRRERG------GTMDWLGNQLKTGPFPGNHLNTLLRRKNAASPRFDGGGXXAGGAETHLDPPDAMARLVSVLLKGEG----GFVERWFKVSSSCSGGAAELLAPPDSFSWL-----------LGALGDGGGAPPPFAGDPPPTPVSAVPKQVSGGVDAFLSHVRSVP-------GRLYVDGQVTGLSPEDEAKKRTQDQESDADGALKLLPLRIPTEWQVVQVACGFRHSALVTASGLVLTLGHGETGRLGHGDEEDALEPKVVRALADTKQAVVWAGCGREHTLVALASGSVYSWGWGEGGRLGLGEVDAVLSPRRVEEFDN-----LGVRITRVSCGREHSLAVSDAGRLYAFGPSDGGRLG 1735          
BLAST of mRNA_P-wetherbeei_contig6877.1.1 vs. uniprot
Match: A0A485LRM8_9STRA (Aste57867_23155 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LRM8_9STRA)

HSP 1 Score: 112 bits (279), Expect = 1.190e-21
Identity = 67/134 (50.00%), Postives = 82/134 (61.19%), Query Frame = 1
Query: 1528 AFSRTALATASSRS----RLDLFGVRLPAEWVVRHVACGYRHAALLTASGALLTVGLGEAGRLGHGDEEDAPAPRIVRALLDGRRRVVAAACGRQHTMCVAADGAVFGFGWGEGGCLGLGDVGSVLLPQAVPSV 1917
            AF+    A ASS S     L+L    LP    ++ VACGYRHAAL+++ G L T G GE GRLGHGDEE    PR V    +    VV A+CGR+HTM VAAD  +FGFGWGE G LG G  G  ++PQ V ++
Sbjct: 1028 AFTNATAAAASSSSMRTIELNLLRFPLPTTHRIQFVACGYRHAALISSRGELFTFGYGECGRLGHGDEEAEAYPRRVDFFDE--IPVVQASCGREHTMVVAADQRLFGFGWGEAGRLGTGASGKCMVPQLVSAI 1159          
BLAST of mRNA_P-wetherbeei_contig6877.1.1 vs. uniprot
Match: A0A6G0X243_9STRA (PH domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X243_9STRA)

HSP 1 Score: 107 bits (267), Expect = 3.300e-20
Identity = 60/113 (53.10%), Postives = 70/113 (61.95%), Query Frame = 1
Query: 1570 RLDLFGVRLPAEWVVRHVACGYRHAALLTASGALLTVGLGEAGRLGHGDEEDAPAPRIVRALLDGRRRVVAAACGRQHTMCVAADGAVFGFGWGEGGCLGLGDVGSVLLPQAV 1908
            +L L    LP    +++V+CGYRHAAL+T  G L T G GE GRLGHGDEE    P  VR   D    VV  +CGR+HTM VA D  +FGFGWGE G LG G+ G  L PQ V
Sbjct: 1035 QLSLLRFPLPMTTSIQYVSCGYRHAALITTRGELFTFGYGECGRLGHGDEETVRHPERVRFFDD--IPVVHVSCGREHTMVVAEDKRLFGFGWGEAGRLGTGESGKCLEPQVV 1145          
BLAST of mRNA_P-wetherbeei_contig6877.1.1 vs. uniprot
Match: A0A1V9ZS90_9STRA (Regulator of chromosome condensation (RCC1) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZS90_9STRA)

HSP 1 Score: 105 bits (261), Expect = 1.760e-19
Identity = 59/114 (51.75%), Postives = 72/114 (63.16%), Query Frame = 1
Query: 1573 LDLFGVRLPAEWV--VRHVACGYRHAALLTASGALLTVGLGEAGRLGHGDEEDAPAPRIVRALLDGRRRVVAAACGRQHTMCVAADGAVFGFGWGEGGCLGLGDVGSVLLPQAV 1908
            +DL  +R P   V  V  V+CGYRHAA++T SGAL T G GE GRLGHGDEE    P+ V  +    + V+ AACGR+HTM V     ++GFGWGE G LG G+ G  L PQ V
Sbjct: 1058 VDLTMLRFPLPMVHKVSFVSCGYRHAAMITTSGALFTFGYGECGRLGHGDEEAIDQPKQV--MYFENKPVLHAACGREHTMVVTQSNQLYGFGWGEAGRLGTGESGKALEPQPV 1169          
BLAST of mRNA_P-wetherbeei_contig6877.1.1 vs. uniprot
Match: A0A397AIH4_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397AIH4_9STRA)

HSP 1 Score: 102 bits (255), Expect = 7.700e-19
Identity = 69/170 (40.59%), Postives = 92/170 (54.12%), Query Frame = 1
Query: 1456 VERDALQA-QGRVFIDGKV---------------RTREGAAFSRTALATASSRSRLDLFGVRLPAEWVVRHVACGYRHAALLTASGALLTVGLGEAGRLGHGDEEDAPAPRIVRALLDGRRRVVAAACGRQHTMCVAADGAVFGFGWGEGGCLGLGDVGSVLLPQAVPSV 1917
            +ER +  A  G  F++G V               + R+ A  + T+L+ +   + L+L    LP +  V  V+CGYRHAA+LT    L T+G GE GRLGHGDE  A  P  V  L +G   V   +CGR+HTM V AD  V+GFGWGE G LG G+ G  L+P  +  V
Sbjct:  632 IERTSFWATNGLAFVEGNVMGMSLDVEQRNMLQNQQRDPALHAFTSLSCSMRSTDLNLLRFPLPMKNTVHFVSCGYRHAAVLTTRAELFTLGYGECGRLGHGDENAALHPTRV-DLFEGIP-VSHVSCGREHTMVVTADNRVYGFGWGEAGRLGTGESGKCLVPTQLTDV 799          
BLAST of mRNA_P-wetherbeei_contig6877.1.1 vs. uniprot
Match: A0A425DLG9_9STRA (Uncharacterized protein (Fragment) n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425DLG9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.890e-18
Identity = 61/134 (45.52%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 1516 REGAAFSRTALATASSRSRLDLFGVRLPAEWVVRHVACGYRHAALLTASGALLTVGLGEAGRLGHGDEEDAPAPRIVRALLDGRRRVVAAACGRQHTMCVAADGAVFGFGWGEGGCLGLGDVGSVLLPQAVPSV 1917
            R+ A  + T+L+ +   + L+L    LP +  V  V+CGYRHAA++T    L T+G GE GRLGHGDE  A  P  V  L +G   V   +CGR+HTM V AD  V+GFGWGE G LG G+ G  L+P  +  V
Sbjct:  467 RDPALHAFTSLSCSMRSTDLNLLQFPLPMKNTVHFVSCGYRHAAVVTTRAELFTLGYGECGRLGHGDENAALHPTRV-DLFEGIP-VSHVSCGREHTMVVTADNRVYGFGWGEAGRLGTGESGKCLVPTQLTDV 598          
BLAST of mRNA_P-wetherbeei_contig6877.1.1 vs. uniprot
Match: A0A3R7C2L6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7C2L6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.390e-18
Identity = 61/134 (45.52%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 1516 REGAAFSRTALATASSRSRLDLFGVRLPAEWVVRHVACGYRHAALLTASGALLTVGLGEAGRLGHGDEEDAPAPRIVRALLDGRRRVVAAACGRQHTMCVAADGAVFGFGWGEGGCLGLGDVGSVLLPQAVPSV 1917
            R+ A  + T+L+ +   + L+L    LP +  V  V+CGYRHAA++T    L T+G GE GRLGHGDE  A  P  V  L +G   V   +CGR+HTM V AD  V+GFGWGE G LG G+ G  L+P  +  V
Sbjct:  795 RDPALHAFTSLSCSMRSTDLNLLRFPLPMKNTVHFVSCGYRHAAVVTTRAELFTLGYGECGRLGHGDENAALHPTRV-DLFEGIP-VSHVSCGREHTMVVTADNRVYGFGWGEAGRLGTGESGKCLVPTQLTDV 926          
BLAST of mRNA_P-wetherbeei_contig6877.1.1 vs. uniprot
Match: W4GXB4_9STRA (eIF3_p135 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GXB4_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.780e-18
Identity = 61/134 (45.52%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 1516 REGAAFSRTALATASSRSRLDLFGVRLPAEWVVRHVACGYRHAALLTASGALLTVGLGEAGRLGHGDEEDAPAPRIVRALLDGRRRVVAAACGRQHTMCVAADGAVFGFGWGEGGCLGLGDVGSVLLPQAVPSV 1917
            R+ A  + T+L+ +   + L+L    LP +  V  V+CGYRHAA++T    L T+G GE GRLGHGDE  A  P  V  L +G   V   +CGR+HTM V AD  V+GFGWGE G LG G+ G  L+P  +  V
Sbjct: 1026 RDPALHAFTSLSCSMRSTDLNLLQFPLPMKNTVHFVSCGYRHAAVVTTRAELFTLGYGECGRLGHGDENAALHPTRV-DLFEGIP-VSHVSCGREHTMVVTADNRVYGFGWGEAGRLGTGESGKCLVPTQLTDV 1157          
BLAST of mRNA_P-wetherbeei_contig6877.1.1 vs. uniprot
Match: A0A3R6ZVZ9_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R6ZVZ9_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.960e-18
Identity = 61/134 (45.52%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 1516 REGAAFSRTALATASSRSRLDLFGVRLPAEWVVRHVACGYRHAALLTASGALLTVGLGEAGRLGHGDEEDAPAPRIVRALLDGRRRVVAAACGRQHTMCVAADGAVFGFGWGEGGCLGLGDVGSVLLPQAVPSV 1917
            R+ A  + T+L+ +   + L+L    LP +  V  V+CGYRHAA++T    L T+G GE GRLGHGDE  A  P  V  L +G   V   +CGR+HTM V AD  V+GFGWGE G LG G+ G  L+P  +  V
Sbjct: 1312 RDPALHAFTSLSCSMRSTDLNLLRFPLPMKNTVHFVSCGYRHAAVVTTRAELFTLGYGECGRLGHGDENAALHPTRV-DLFEGIP-VSHVSCGREHTMVVTADNRVYGFGWGEAGRLGTGESGKCLVPTQLTDV 1443          
BLAST of mRNA_P-wetherbeei_contig6877.1.1 vs. uniprot
Match: A0A7S3Y9A0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9A0_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 2.340e-17
Identity = 60/137 (43.80%), Postives = 76/137 (55.47%), Query Frame = 1
Query: 1612 VRHVACGYRHAALLTASGALLTVGLGEAGRLGHGDEEDAPAPRIVRALLDGRRRVVAAACGRQHTMCVAADGAVFGFGWGEGGCLGLGDVGSVLLPQAVPSVDSGALGAIGARVVDVACGLEHSLLLTSAGQLLACG 2022
            V+ V CG +HAA+LTA G + T G G  GRLGHGD      PR V AL  GR   V  ACG  +T  V+A GA++ +G GE G LGLGD    L P  V ++   A+ A+ A       G  H+ +L   GQ+ ACG
Sbjct:   12 VKQVCCGGQHAAVLTARGEVFTWGRGGFGRLGHGDAAPQKEPRRVAALARGRVHCVQVACGFAYTCAVSAAGALYTWGAGENGRLGLGDPEDRLSPARVAALAGTAVRAVYA-------GSVHTCVLAVDGQVYACG 141          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6877.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LS90_ECTSI1.360e-5934.72eIF3_p135 domain-containing protein n=1 Tax=Ectoca... [more]
A0A485LRM8_9STRA1.190e-2150.00Aste57867_23155 protein n=1 Tax=Aphanomyces stella... [more]
A0A6G0X243_9STRA3.300e-2053.10PH domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A1V9ZS90_9STRA1.760e-1951.75Regulator of chromosome condensation (RCC1) n=1 Ta... [more]
A0A397AIH4_9STRA7.700e-1940.59Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A425DLG9_9STRA1.890e-1845.52Uncharacterized protein (Fragment) n=4 Tax=Aphanom... [more]
A0A3R7C2L6_9STRA2.390e-1845.52Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
W4GXB4_9STRA2.780e-1845.52eIF3_p135 domain-containing protein n=1 Tax=Aphano... [more]
A0A3R6ZVZ9_9STRA2.960e-1845.52Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A7S3Y9A0_HETAK2.340e-1743.80Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6877contigP-wetherbeei_contig6877:727..3231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LS90
PFAMsBRX,BRX_N,BRX_assoc,FYVE,PH_12,RCC1,eIF3_p135
Model size2064
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.24e-60
EggNOG OGsCOG5184@1|root,2S0QB@2759|Eukaryota
Ec32 ortholog descriptionRegulator of chromosome condensation, RCC1
Ec32 orthologEc-12_004400.1
DescriptionRegulator of chromosome condensation (RCC1) repeat
Cds size2064
COG categoryDZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186942.8168406-CDS-P-wetherbeei_contig6877:726..11371683186942.8168406-CDS-P-wetherbeei_contig6877:726..1137Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6877 727..1137 +
1683186942.8268342-CDS-P-wetherbeei_contig6877:1314..24381683186942.8268342-CDS-P-wetherbeei_contig6877:1314..2438Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6877 1315..2438 +
1683186942.8351934-CDS-P-wetherbeei_contig6877:2702..32311683186942.8351934-CDS-P-wetherbeei_contig6877:2702..3231Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6877 2703..3231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6877.1.1prot_P-wetherbeei_contig6877.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6877 727..3231 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6877.1.1

>prot_P-wetherbeei_contig6877.1.1 ID=prot_P-wetherbeei_contig6877.1.1|Name=mRNA_P-wetherbeei_contig6877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=688bp
SLPGIIGRSPQVESRLWLVLGPSGSVGGLKLGPSHGRAHICDGMMPLQLL
PALLRCTATVLTAPCLRRAQEGGAVPRLTAADVDSAGIAAPSATGCRFKG
ATAAAAALKAQIRARAVANCEAAAAAAGGYGGGLGGAHALALAKADVLSE
AAEQAEAALTTLLPPAQDGGGALPGGLRPPSASGFPASTTAFASGSPAAA
AMHQAPAYLLVGGVALLSVLRAEQQRGSAAAGTLSCARLSLRRALLNGNG
NGGDGDGAGADGGGRGFADGGWRSDGSVSPPRRGEVTAPRPGELLWLWRV
LQVLFPSSGDGQSMTVWGSHPLVPTVALLLDCAAKGSVSSSSADGSHSCG
SDGPETEPATAAAAPARPEWLRRLLETTVFPSSQLGPAGIAHAAEPALRM
TLHVLRNSGLAAGADAAAWQTPCSLLLPTALFEWARPSLDAAADLALASV
ASVEAAPSPAASRRREAASAFMHGGSAVLLEAAKQVERDALQAQGRVFID
GKVRTREGAAFSRTALATASSRSRLDLFGVRLPAEWVVRHVACGYRHAAL
LTASGALLTVGLGEAGRLGHGDEEDAPAPRIVRALLDGRRRVVAAACGRQ
HTMCVAADGAVFGFGWGEGGCLGLGDVGSVLLPQAVPSVDSGALGAIGAR
VVDVACGLEHSLLLTSAGQLLACGHGTGGRLGLGSEAG
back to top

mRNA from alignment at P-wetherbeei_contig6877:727..3231+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6877.1.1 ID=mRNA_P-wetherbeei_contig6877.1.1|Name=mRNA_P-wetherbeei_contig6877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2505bp|location=Sequence derived from alignment at P-wetherbeei_contig6877:727..3231+ (Phaeothamnion wetherbeei SAG_119_79)
TCGTTGCCCGGCATAATCGGACGGTCGCCGCAGGTGGAGTCGCGGCTTTG GCTGGTGCTCGGACCGTCCGGGTCGGTGGGCGGCCTCAAGCTGGGCCCAT CGCACGGCCGGGCGCACATTTGCGATGGCATGATGCCCCTGCAGCTGCTG CCGGCGCTGCTGCGCTGCACGGCCACGGTGCTGACGGCGCCATGCCTGCG GCGCGCGCAGGAAGGCGGCGCCGTGCCGCGCCTGACCGCCGCGGACGTCG ACAGCGCCGGCATAGCCGCGCCGAGCGCCACCGGCTGCCGCTTCAAGGGC GCCACTGCGGCGGCGGCCGCGCTTAAGGCCCAGATCCGCGCGCGGGCTGT AGCCAACTGCGAGGCGGCGGCAGCGGCGGCGGGCGGCTACGGGGGCGGCC TGGGCGGTGCGGTTGCCGTTGCACGCGCATACAGCATTCTGGTGGACAGA GTTTATGGGCCGTCCATGGGCCGCTCCGGTGGAAACCGCGGCGGCGGCGG CGGCAGGAGCGGGAGCGGCGTTTCTGCCGATGCGTGGGAGGACTTTGAGA GCGCGGGCCGGGCGGCTGTGGCGGAGGCTCGGCTGCAGCACGCGCTGGCG CTGGCCAAGGCAGACGTCTTGTCCGAGGCGGCGGAGCAGGCCGAAGCCGC CCTCACAACACTGCTGCCACCCGCGCAGGACGGCGGAGGCGCGTTGCCGG GCGGCCTGCGGCCGCCGTCGGCGTCCGGCTTTCCAGCATCTACGACCGCC TTCGCCTCCGGCAGCCCCGCTGCCGCCGCGATGCACCAGGCGCCGGCGTA CCTTCTGGTGGGCGGTGTGGCGCTGCTGTCGGTGCTTCGTGCGGAGCAGC AACGTGGGAGCGCCGCTGCGGGGACGTTGTCGTGCGCCAGACTCAGCCTC AGACGTGCCTTGCTCAATGGCAATGGCAATGGCGGCGATGGTGATGGCGC CGGTGCTGATGGCGGCGGCCGCGGATTCGCCGATGGTGGCTGGAGGAGCG ACGGCAGCGTCTCGCCACCCCGCCGCGGAGAAGTGACGGCTCCGCGGCCG GGGGAGCTGCTGTGGTTGTGGCGCGTGCTGCAGGTCCTCTTCCCCTCATC CGGCGACGGGCAGAGCATGACCGTCTGGGGCTCGCACCCGTTGGTGCCCA CCGTCGCCCTGCTGCTCGACTGCGCCGCCAAAGGCAGCGTCAGCAGCAGC AGCGCAGATGGCAGCCATAGCTGTGGAAGCGATGGGCCCGAGACAGAGCC GGCCACGGCGGCGGCTGCGCCTGCGCGGCCGGAGTGGCTGCGGAGGCTGC TAGAGACGACGGTCTTTCCGTCCAGCCAGCTCGGCCCCGCCGGGATCGCC CACGCCGCCGAGCCGGCGCTGCGCATGACCCTCCATGTCCTGCGAAACAG CGGGCTGGCCGCCGGCGCCGACGCCGCCGCCTGGCAGACACCATGCAGCC TGCTGCTGCCCACCGCGCTGTTCGAGTGGGCCCGTCCGTCCCTCGACGCT GCCGCCGATTTGGCTTTGGCGTCGGTGGCGTCGGTAGAGGCGGCGCCGTC CCCGGCGGCTTCCCGGCGGCGCGAGGCGGCGAGTGCGTTCATGCACGGTG GTTCTGCCGTGCTGCTCGAGGCGGCCAAGCAGGTGGAGCGCGATGCGTTA CAGGCACAGGGCCGCGTCTTCATCGATGGCAAGGTGAGAACACGGGAAGG AGCTGCCTTCTCGTTTGTGATATCTGCAGGATCCGTCGTGCCACGTCCTA AGACCTTATTTAAACTGCTTTTTGTCTCACGTCGCTCCGTCTGTGCGCAT TACGTTCACCGCGGCGGCCTTTTGTTGACACAGATCCTGGGCCTCTCACT CGAGGACGAGCACGTGCGGAGGCTCGAGCGCCTCGAAGGATCTGGCGACG CCGGCGCCGATCCGCTCAGCCCCGGCGGCGGCAGTGGTGGCGGCAATGGT GGCGGCAGCGGCGACAGCGGCGACAGCCGGACTGCGTTGGCAACGGCCTC TAGCCGGAGCCGGCTGGACTTGTTCGGAGTGCGTCTGCCGGCCGAGTGGG TGGTGCGGCACGTGGCGTGCGGCTACCGGCACGCGGCGCTGCTGACGGCA AGCGGCGCGCTGTTGACTGTCGGACTGGGCGAGGCGGGCCGGCTCGGCCA CGGCGACGAGGAGGATGCCCCGGCGCCGCGCATCGTCCGCGCGCTGCTCG ACGGCCGCCGCCGCGTCGTGGCGGCTGCCTGCGGCCGGCAGCACACCATG TGCGTGGCGGCGGACGGCGCCGTGTTCGGCTTCGGCTGGGGCGAGGGCGG CTGCCTGGGCCTCGGCGACGTCGGCTCGGTCCTCCTGCCACAGGCGGTGC CGAGCGTCGACTCCGGCGCGTTGGGCGCGATCGGAGCCCGCGTGGTGGAC GTGGCGTGCGGGCTGGAGCACTCGCTGCTGCTGACGAGCGCCGGCCAACT GCTGGCGTGCGGCCATGGCACGGGCGGCCGCCTCGGGCTCGGCTCCGAAG CGGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6877:727..3231+

>mRNA_P-wetherbeei_contig6877.1.1 ID=mRNA_P-wetherbeei_contig6877.1.1|Name=mRNA_P-wetherbeei_contig6877.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2064bp|location=Sequence derived from alignment at P-wetherbeei_contig6877:727..3231+ (Phaeothamnion wetherbeei SAG_119_79)
TCGTTGCCCGGCATAATCGGACGGTCGCCGCAGGTGGAGTCGCGGCTTTG
GCTGGTGCTCGGACCGTCCGGGTCGGTGGGCGGCCTCAAGCTGGGCCCAT
CGCACGGCCGGGCGCACATTTGCGATGGCATGATGCCCCTGCAGCTGCTG
CCGGCGCTGCTGCGCTGCACGGCCACGGTGCTGACGGCGCCATGCCTGCG
GCGCGCGCAGGAAGGCGGCGCCGTGCCGCGCCTGACCGCCGCGGACGTCG
ACAGCGCCGGCATAGCCGCGCCGAGCGCCACCGGCTGCCGCTTCAAGGGC
GCCACTGCGGCGGCGGCCGCGCTTAAGGCCCAGATCCGCGCGCGGGCTGT
AGCCAACTGCGAGGCGGCGGCAGCGGCGGCGGGCGGCTACGGGGGCGGCC
TGGGCGGTGCGCACGCGCTGGCGCTGGCCAAGGCAGACGTCTTGTCCGAG
GCGGCGGAGCAGGCCGAAGCCGCCCTCACAACACTGCTGCCACCCGCGCA
GGACGGCGGAGGCGCGTTGCCGGGCGGCCTGCGGCCGCCGTCGGCGTCCG
GCTTTCCAGCATCTACGACCGCCTTCGCCTCCGGCAGCCCCGCTGCCGCC
GCGATGCACCAGGCGCCGGCGTACCTTCTGGTGGGCGGTGTGGCGCTGCT
GTCGGTGCTTCGTGCGGAGCAGCAACGTGGGAGCGCCGCTGCGGGGACGT
TGTCGTGCGCCAGACTCAGCCTCAGACGTGCCTTGCTCAATGGCAATGGC
AATGGCGGCGATGGTGATGGCGCCGGTGCTGATGGCGGCGGCCGCGGATT
CGCCGATGGTGGCTGGAGGAGCGACGGCAGCGTCTCGCCACCCCGCCGCG
GAGAAGTGACGGCTCCGCGGCCGGGGGAGCTGCTGTGGTTGTGGCGCGTG
CTGCAGGTCCTCTTCCCCTCATCCGGCGACGGGCAGAGCATGACCGTCTG
GGGCTCGCACCCGTTGGTGCCCACCGTCGCCCTGCTGCTCGACTGCGCCG
CCAAAGGCAGCGTCAGCAGCAGCAGCGCAGATGGCAGCCATAGCTGTGGA
AGCGATGGGCCCGAGACAGAGCCGGCCACGGCGGCGGCTGCGCCTGCGCG
GCCGGAGTGGCTGCGGAGGCTGCTAGAGACGACGGTCTTTCCGTCCAGCC
AGCTCGGCCCCGCCGGGATCGCCCACGCCGCCGAGCCGGCGCTGCGCATG
ACCCTCCATGTCCTGCGAAACAGCGGGCTGGCCGCCGGCGCCGACGCCGC
CGCCTGGCAGACACCATGCAGCCTGCTGCTGCCCACCGCGCTGTTCGAGT
GGGCCCGTCCGTCCCTCGACGCTGCCGCCGATTTGGCTTTGGCGTCGGTG
GCGTCGGTAGAGGCGGCGCCGTCCCCGGCGGCTTCCCGGCGGCGCGAGGC
GGCGAGTGCGTTCATGCACGGTGGTTCTGCCGTGCTGCTCGAGGCGGCCA
AGCAGGTGGAGCGCGATGCGTTACAGGCACAGGGCCGCGTCTTCATCGAT
GGCAAGGTGAGAACACGGGAAGGAGCTGCCTTCTCCCGGACTGCGTTGGC
AACGGCCTCTAGCCGGAGCCGGCTGGACTTGTTCGGAGTGCGTCTGCCGG
CCGAGTGGGTGGTGCGGCACGTGGCGTGCGGCTACCGGCACGCGGCGCTG
CTGACGGCAAGCGGCGCGCTGTTGACTGTCGGACTGGGCGAGGCGGGCCG
GCTCGGCCACGGCGACGAGGAGGATGCCCCGGCGCCGCGCATCGTCCGCG
CGCTGCTCGACGGCCGCCGCCGCGTCGTGGCGGCTGCCTGCGGCCGGCAG
CACACCATGTGCGTGGCGGCGGACGGCGCCGTGTTCGGCTTCGGCTGGGG
CGAGGGCGGCTGCCTGGGCCTCGGCGACGTCGGCTCGGTCCTCCTGCCAC
AGGCGGTGCCGAGCGTCGACTCCGGCGCGTTGGGCGCGATCGGAGCCCGC
GTGGTGGACGTGGCGTGCGGGCTGGAGCACTCGCTGCTGCTGACGAGCGC
CGGCCAACTGCTGGCGTGCGGCCATGGCACGGGCGGCCGCCTCGGGCTCG
GCTCCGAAGCGGGC
back to top