mRNA_P-wetherbeei_contig6861.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6861.1.1
Unique NamemRNA_P-wetherbeei_contig6861.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6861.1.1 vs. uniprot
Match: A0A835ZER1_9STRA (VEFS-Box of polycomb protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZER1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 4.950e-26
Identity = 46/72 (63.89%), Postives = 57/72 (79.17%), Query Frame = 1
Query:   43 MQPEELDHDSDDDVDDSWILSVREKLLDDFDDVSLEEKTFMKLWNRHTRCFRTIADSQIPLSCEVFARRFAP 258
            M+ +E+D DSDDDVD SW+L    +L+D+++DVS EEK FMKLWN HTR F T +DS +PLSC VFARRFAP
Sbjct:    1 MREDEMDIDSDDDVDSSWLLQQNARLIDEYEDVSAEEKAFMKLWNMHTRAFETPSDSSVPLSCAVFARRFAP 72          
BLAST of mRNA_P-wetherbeei_contig6861.1.1 vs. uniprot
Match: A0A7S2RPM2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPM2_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.520e-24
Identity = 45/81 (55.56%), Postives = 63/81 (77.78%), Query Frame = 1
Query:    1 MPVRQYFHSRTCLPMQPEELDHDSDDDVDDSWILSVREKLLDDFDDVSLEEKTFMKLWNRHTRCFRTIADSQIPLSCEVFA 243
            +PVRQY+HSRT  PM  EE  +DSD+++D+SW++ + EKLLD+F+DVS EEK FMKLWN + R  + +AD Q+P++C  FA
Sbjct:  449 LPVRQYYHSRTGAPMAAEEFSYDSDEEIDESWMVELSEKLLDEFEDVSTEEKAFMKLWNSYVRDVKILADFQLPIACARFA 529          
BLAST of mRNA_P-wetherbeei_contig6861.1.1 vs. uniprot
Match: A0A7R9UHM9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UHM9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 3.110e-23
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1
Query:    4 PVRQYFHSRTCLPMQPEELDHDSDDDVDDSWILSVREKLLDDFDDVSLEEKTFMKLWNRHTRCFRTIADSQIPLSCEVFARRFAP 258
            PVRQY+HSRT LP+ P E+D DSD+++DD W+    E+L+++F+DV+ EE   MKLWNRHTR  +  AD+++P    +FA+RFAP
Sbjct:  416 PVRQYYHSRTYLPLLPSEVDIDSDEELDDDWMQQESERLINEFEDVAPEEILLMKLWNRHTRSHKVQADNRVPHLLRLFAKRFAP 500          
BLAST of mRNA_P-wetherbeei_contig6861.1.1 vs. uniprot
Match: A0A225X3U3_9STRA (Polycomb protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X3U3_9STRA)

HSP 1 Score: 100 bits (249), Expect = 8.540e-23
Identity = 46/80 (57.50%), Postives = 60/80 (75.00%), Query Frame = 1
Query:   10 RQYFHSRTCLPMQPEELDHDSDDDVDDSWILSVREKLLDDFDDVSLEEKTFMKLWNRHTRCFRTIADSQIPLSCEVFARR 249
            RQYFHSRT   +   E D+DSD+DVD+SWI    E+LLD+F+DVSLEEK FMK+WNRH + F+ +AD  +  SC +FAR+
Sbjct:  456 RQYFHSRTGAVVLDHEKDYDSDNDVDESWITKQSERLLDEFEDVSLEEKEFMKMWNRHVKEFKILADFMVASSCRMFARK 535          
BLAST of mRNA_P-wetherbeei_contig6861.1.1 vs. uniprot
Match: A0A3F2S4Z7_9STRA (VEFS-Box domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S4Z7_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.260e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   10 RQYFHSRTCLPMQPEELDHDSDDDVDDSWILSVREKLLDDFDDVSLEEKTFMKLWNRHTRCFRTIADSQIPLSCEVFARR 249
            RQYFHSRT   +   E D+DSDDDVD++WI    E+LLD+F+DVSLEEK FMK WNRH + F+ +AD  +  SC +FAR+
Sbjct:  354 RQYFHSRTGAVVLDHEKDYDSDDDVDETWITKQSERLLDEFEDVSLEEKEFMKKWNRHVKEFKILADFMVASSCRMFARK 433          
BLAST of mRNA_P-wetherbeei_contig6861.1.1 vs. uniprot
Match: A0A0P1A7R1_PLAHL (Zn-finger protein joined to JAZF1 (Predicted suppressor) n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7R1_PLAHL)

HSP 1 Score: 99.8 bits (247), Expect = 1.590e-22
Identity = 46/80 (57.50%), Postives = 59/80 (73.75%), Query Frame = 1
Query:   10 RQYFHSRTCLPMQPEELDHDSDDDVDDSWILSVREKLLDDFDDVSLEEKTFMKLWNRHTRCFRTIADSQIPLSCEVFARR 249
            RQYFHSRT   +   E D+DSDDDVD++WI    E+LLD+F+DVSLEEK FMK WNRH + F+ +AD  +  SC +FAR+
Sbjct:  457 RQYFHSRTGAVVLDHEKDYDSDDDVDETWITKQSERLLDEFEDVSLEEKEFMKKWNRHVKEFKILADFMVASSCRMFARK 536          
BLAST of mRNA_P-wetherbeei_contig6861.1.1 vs. uniprot
Match: A0A8K1CGU6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGU6_PYTOL)

HSP 1 Score: 99.8 bits (247), Expect = 1.610e-22
Identity = 47/84 (55.95%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   10 RQYFHSRTCLPMQPEELDHDSDDDVDDSWILSVREKLLDDFDDVSLEEKTFMKLWNRHTRCFRTIADSQIPLSCEVFARRFAPR 261
            RQYFHSRT   +   E D+DSDDDVD+ WI    E+LLD+F+DVSLEEK FMK+WNRH +  R +AD  +  SC +FA+R   R
Sbjct:  493 RQYFHSRTGAVVLDHEKDYDSDDDVDEEWITQQSERLLDEFEDVSLEEKEFMKMWNRHVKENRILADFMVASSCRLFAKRHGER 576          
BLAST of mRNA_P-wetherbeei_contig6861.1.1 vs. uniprot
Match: F0WMB0_9STRA (Polycomb protein putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMB0_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.960e-22
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   10 RQYFHSRTCLPMQPEELDHDSDDDVDDSWILSVREKLLDDFDDVSLEEKTFMKLWNRHTRCFRTIADSQIPLSCEVFARRFA 255
            RQYFHSRT   +   E D+DSD+D+D+SWI++  EKLLD+F+DVSLEEK FMK WNRH + +R +AD  +  +C +FA+  A
Sbjct:  454 RQYFHSRTGAVVLDHEKDYDSDEDIDESWIITQSEKLLDEFEDVSLEEKEFMKRWNRHLKKYRILADFMVASACRLFAKENA 535          
BLAST of mRNA_P-wetherbeei_contig6861.1.1 vs. uniprot
Match: G4YVZ0_PHYSP (VEFS-Box domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YVZ0_PHYSP)

HSP 1 Score: 99.0 bits (245), Expect = 2.980e-22
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 1
Query:   10 RQYFHSRTCLPMQPEELDHDSDDDVDDSWILSVREKLLDDFDDVSLEEKTFMKLWNRHTRCFRTIADSQIPLSCEVFAR 246
            RQYFHSRT   +   E D+DSDDDVD++WI    EKLLD+F+DVSLEEK FMK WNRH + F+ +AD  +  SC  FAR
Sbjct:  458 RQYFHSRTGAVVLDHEKDYDSDDDVDETWITKQSEKLLDEFEDVSLEEKEFMKKWNRHVKEFKILADFMVASSCRKFAR 536          
BLAST of mRNA_P-wetherbeei_contig6861.1.1 vs. uniprot
Match: A0A024FZA8_9STRA (VEFS-Box domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FZA8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.110e-22
Identity = 45/82 (54.88%), Postives = 61/82 (74.39%), Query Frame = 1
Query:   10 RQYFHSRTCLPMQPEELDHDSDDDVDDSWILSVREKLLDDFDDVSLEEKTFMKLWNRHTRCFRTIADSQIPLSCEVFARRFA 255
            RQYFHSRT   +   E D+DSD+D+D+SWI++  EKLLD+F+DVSLEEK FMK WNRH + +R +AD  +  +C +FA+  A
Sbjct:  853 RQYFHSRTGAVVLDHEKDYDSDEDIDESWIITQSEKLLDEFEDVSLEEKEFMKRWNRHLKKYRILADFMVASACRLFAKENA 934          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6861.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZER1_9STRA4.950e-2663.89VEFS-Box of polycomb protein-domain-containing pro... [more]
A0A7S2RPM2_9STRA3.520e-2455.56Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9UHM9_9STRA3.110e-2352.94Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A225X3U3_9STRA8.540e-2357.50Polycomb protein n=1 Tax=Phytophthora megakarya Ta... [more]
A0A3F2S4Z7_9STRA1.260e-2257.50VEFS-Box domain-containing protein n=1 Tax=Phytoph... [more]
A0A0P1A7R1_PLAHL1.590e-2257.50Zn-finger protein joined to JAZF1 (Predicted suppr... [more]
A0A8K1CGU6_PYTOL1.610e-2255.95Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0WMB0_9STRA2.960e-2254.88Polycomb protein putative n=1 Tax=Albugo laibachii... [more]
G4YVZ0_PHYSP2.980e-2259.49VEFS-Box domain-containing protein n=4 Tax=Phytoph... [more]
A0A024FZA8_9STRA3.110e-2254.88VEFS-Box domain-containing protein n=1 Tax=Albugo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6861contigP-wetherbeei_contig6861:1..731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000015616
PFAMsVEFS-Box
Model size264
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.59e-23
EggNOG OGsKOG2350@1|root,KOG2350@2759|Eukaryota,1MA8Y@121069|Pythiales
DescriptionPolycomb protein. Source PGD
Cds size264
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186942.083936-CDS-P-wetherbeei_contig6861:0..1091683186942.083936-CDS-P-wetherbeei_contig6861:0..109Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6861 1..109 -
1683186942.0968094-CDS-P-wetherbeei_contig6861:344..3821683186942.0968094-CDS-P-wetherbeei_contig6861:344..382Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6861 345..382 -
1683186942.1076303-CDS-P-wetherbeei_contig6861:614..7311683186942.1076303-CDS-P-wetherbeei_contig6861:614..731Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6861 615..731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6861.1.1prot_P-wetherbeei_contig6861.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6861 1..731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6861.1.1

>prot_P-wetherbeei_contig6861.1.1 ID=prot_P-wetherbeei_contig6861.1.1|Name=mRNA_P-wetherbeei_contig6861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
MPVRQYFHSRTCLPMQPEELDHDSDDDVDDSWILSVREKLLDDFDDVSLE
EKTFMKLWNRHTRCFRTIADSQIPLSCEVFARRFAPR*
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mRNA from alignment at P-wetherbeei_contig6861:1..731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6861.1.1 ID=mRNA_P-wetherbeei_contig6861.1.1|Name=mRNA_P-wetherbeei_contig6861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=731bp|location=Sequence derived from alignment at P-wetherbeei_contig6861:1..731- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGTGCGGCAGTACTTCCACTCGCGGACGTGCCTGCCGATGCAGCC AGAGGAGCTCGATCACGACAGCGACGACGATGTCGACGACAGCTGGATAC TCTCTGTCCGGGAAAAGGTGAGGATGGGGGAAAGAGGGATGATGAAAGGG AAGGACATCTGACGGGCGGGAGAGCATGGTTCTGCACTTTCTTTGTTTGC TCTTTCTTTCTTGTTTCCGTTGTGAGCATTGTTGAAATCTGCTTGCAATA CTTACATCATATTAAGATCCGGTGGTTTGGAGAGTGCTTACGTACACTTT CATGCTGTGCCCGTTCTTGCCTGGCTTTCGGCTCTCTTGTTTCACACAGC TGCTGGACGACTTCGATGACGTCTCTCTGGAGGAAAAGTGAGCGCTTTAT AATGCTCGAATATGTCCTCGTTCGTTTCTCTTCTTTGCTGTTGTACATTT GCACGTAGGATTAAGGAATCTTCATTGTAACGGCCGCCCACCATCGCAAA TACCGCTGCCCCGGGCGTTTCTCTCTTGCCCGTTCACCTCACTTTCCCCT TCTCTTGCCAACCTTTCCTGAAATCTCGTCACAACGACGAGATTTCCGCC TCTTCGGTGCGCTGTGCCGCAGGACGTTCATGAAGTTGTGGAACCGCCAC ACGCGGTGCTTCCGCACCATCGCCGACAGCCAGATCCCGCTCTCATGCGA GGTCTTCGCCCGCCGCTTCGCCCCGAGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6861:1..731-

>mRNA_P-wetherbeei_contig6861.1.1 ID=mRNA_P-wetherbeei_contig6861.1.1|Name=mRNA_P-wetherbeei_contig6861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig6861:1..731- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGTGCGGCAGTACTTCCACTCGCGGACGTGCCTGCCGATGCAGCC
AGAGGAGCTCGATCACGACAGCGACGACGATGTCGACGACAGCTGGATAC
TCTCTGTCCGGGAAAAGCTGCTGGACGACTTCGATGACGTCTCTCTGGAG
GAAAAGACGTTCATGAAGTTGTGGAACCGCCACACGCGGTGCTTCCGCAC
CATCGCCGACAGCCAGATCCCGCTCTCATGCGAGGTCTTCGCCCGCCGCT
TCGCCCCGAGGTGA
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