mRNA_P-wetherbeei_contig680.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig680.5.1
Unique NamemRNA_P-wetherbeei_contig680.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig680.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig680contigP-wetherbeei_contig680:6894..7633 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008612359.1
Model size741
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.95e-07
EggNOG OGs28HE3@1|root,2RM5J@2759|Eukaryota
Cds size375
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186938.6880448-CDS-P-wetherbeei_contig680:6893..72681683186938.6880448-CDS-P-wetherbeei_contig680:6893..7268Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig680 6894..7268 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186938.6999273-UTR-P-wetherbeei_contig680:7268..76331683186938.6999273-UTR-P-wetherbeei_contig680:7268..7633Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig680 7269..7633 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig680.5.1prot_P-wetherbeei_contig680.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig680 6894..7268 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig680.5.1

>prot_P-wetherbeei_contig680.5.1 ID=prot_P-wetherbeei_contig680.5.1|Name=mRNA_P-wetherbeei_contig680.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=125bp
MATGVAAALAAAAFKQLRWTEEEHEYAAAIVVAFKAGRLPLPGHTKLGVL
LQKLLRCNQSRMSRKLPGVYGLTYDHRLQQQGAAADSGGGDGNSGDGGDG
GSRGYSGNCCSRADLDQEDSLGGGG
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mRNA from alignment at P-wetherbeei_contig680:6894..7633-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig680.5.1 ID=mRNA_P-wetherbeei_contig680.5.1|Name=mRNA_P-wetherbeei_contig680.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=740bp|location=Sequence derived from alignment at P-wetherbeei_contig680:6894..7633- (Phaeothamnion wetherbeei SAG_119_79)
CTTTTAAGCTGTAAATTATATATTTCGAAGGGTTTGGACATCCTGCCTGA
ACCCCTCAAAGCATTCTAACACGTTCTAAACATTATACATGCCATGCAAT
CGTGATCCGGACGCTTGGCCGACAATCAGACAGCGGTGAATTTAAACTTT
TACGGCATGATGCCCTCCGGTTCCCTAGGACATGCCTGTAGTGTGCGTAA
GCCGTGCTATATCATTCCTCTAATCTACCATTCTCCAATTCCCGCTCCAC
AGCGTTCTCTTTTGCTTACGATCATTCCCGTGCAACGCGATGGTAATTGT
GATGGTGGCGACGACGGTGGTGCTGGCGGCGGCTACGGTTGTTGCGGCGG
TAACGGCGACTCGCTATGGCGACGGGTGTTGCTGCGGCGTTGGCGGCGGC
GGCTTTTAAACAACTCAGGTGGACGGAAGAGGAGCACGAATACGCCGCAG
CCATCGTGGTAGCGTTCAAGGCCGGGCGCCTTCCATTGCCCGGCCACACC
AAGCTCGGGGTTCTCCTGCAGAAGCTGCTGCGCTGCAACCAGTCCCGCAT
GTCCCGCAAGCTTCCGGGAGTGTACGGCCTGACTTATGATCATCGCTTGC
AACAGCAAGGGGCTGCAGCCGACAGTGGCGGCGGCGATGGCAATAGCGGT
GACGGCGGTGACGGCGGCAGCAGAGGTTACAGTGGCAATTGCTGCAGCAG
AGCGGATCTCGACCAGGAAGACTCTCTTGGCGGCGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig680:6894..7633-

>mRNA_P-wetherbeei_contig680.5.1 ID=mRNA_P-wetherbeei_contig680.5.1|Name=mRNA_P-wetherbeei_contig680.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=375bp|location=Sequence derived from alignment at P-wetherbeei_contig680:6894..7633- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGACGGGTGTTGCTGCGGCGTTGGCGGCGGCGGCTTTTAAACAACT
CAGGTGGACGGAAGAGGAGCACGAATACGCCGCAGCCATCGTGGTAGCGT
TCAAGGCCGGGCGCCTTCCATTGCCCGGCCACACCAAGCTCGGGGTTCTC
CTGCAGAAGCTGCTGCGCTGCAACCAGTCCCGCATGTCCCGCAAGCTTCC
GGGAGTGTACGGCCTGACTTATGATCATCGCTTGCAACAGCAAGGGGCTG
CAGCCGACAGTGGCGGCGGCGATGGCAATAGCGGTGACGGCGGTGACGGC
GGCAGCAGAGGTTACAGTGGCAATTGCTGCAGCAGAGCGGATCTCGACCA
GGAAGACTCTCTTGGCGGCGGCGGC
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