mRNA_P-wetherbeei_contig6789.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6789.1.1
Unique NamemRNA_P-wetherbeei_contig6789.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6789.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6789contigP-wetherbeei_contig6789:158..1560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1068
Hectar predicted targeting categoryother localisation
Exons2
Cds size582
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.631478-UTR-P-wetherbeei_contig6789:157..3311683186937.631478-UTR-P-wetherbeei_contig6789:157..331Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6789 158..331 +
1683186937.660638-UTR-P-wetherbeei_contig6789:913..11721683186937.660638-UTR-P-wetherbeei_contig6789:913..1172Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6789 914..1172 +
1683186937.6730187-UTR-P-wetherbeei_contig6789:1507..15601683186937.6730187-UTR-P-wetherbeei_contig6789:1507..1560Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6789 1508..1560 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.6417613-CDS-P-wetherbeei_contig6789:331..9131683186937.6417613-CDS-P-wetherbeei_contig6789:331..913Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6789 332..913 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6789.1.1prot_P-wetherbeei_contig6789.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6789 332..913 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6789.1.1

>prot_P-wetherbeei_contig6789.1.1 ID=prot_P-wetherbeei_contig6789.1.1|Name=mRNA_P-wetherbeei_contig6789.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=194bp
MSPISYSDACVPEIQRVPMCAAPISLSMQRARCRTAGAFGRVAGALPAVA
TPLASRSGGLSTRRRRTHAAAATPSGGRIGGRRGRTRWRRRRRRRRREVW
HRCRGGGTVKNAEGSGGRRCNDSGSKSGRDAHAGCGSGGSANSAGAGEGV
SDDGASDKSKDSRAPPSAAADRCFEGRRGRRGHMRGGRPQNNQ*
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mRNA from alignment at P-wetherbeei_contig6789:158..1560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6789.1.1 ID=mRNA_P-wetherbeei_contig6789.1.1|Name=mRNA_P-wetherbeei_contig6789.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1403bp|location=Sequence derived from alignment at P-wetherbeei_contig6789:158..1560+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGGTTGCTTTTGGAATCATAATCTCTGTGTAATTGCGGCAGCCAGAGC
CTCGATTCCTTTTCTGATCCCTTCAAATGCATTGATTTTTAACCTTACCT
AAGTGCAAGTACACGCTCGTTTTTATAAACCGAAGTGGAACGCATTCTTC
CCGCCCATTTCGTTTTCCTTCTCCATGTCGCCTATCTCCTACTCCGACGC
CTGCGTTCCCGAAATCCAACGAGTACCAATGTGCGCCGCGCCAATTTCGC
TTTCCATGCAGCGAGCGCGGTGCAGAACTGCGGGCGCGTTTGGAAGAGTG
GCAGGAGCGCTACCGGCAGTTGCGACGCCGCTCGCTTCTCGAAGTGGAGG
GCTTTCGACGCGACGCCGCCGCACTCACGCAGCGGCTGCAACGCCTTCAG
GCGGCCGGATTGGCGGCCGCCGGGGGAGGACCAGGTGGCGGCGGCGGCGG
CGGAGGCGGCGACGAGAGGTGTGGCACCGGTGCAGAGGGGGAGGAACAGT
CAAGAACGCCGAAGGCAGCGGCGGCCGCCGCTGCAACGATTCCGGGAGCA
AGAGCGGTAGAGACGCGCATGCCGGCTGCGGCAGCGGGGGCTCGGCAAAC
AGCGCCGGCGCCGGTGAGGGCGTCAGCGACGACGGCGCCAGCGACAAGAG
CAAAGACAGCCGGGCTCCACCGTCGGCGGCGGCGGACAGATGCTTCGAGG
GGCGCCGAGGGCGCCGGGGCCATATGCGGGGGGGGCGGCCGCAGAATAAC
CAATGACACGTGGCGGCCACCCGCTGTTGGGGGACGCGGCATTGCCCAGG
CTGTTGCGGAGCTAAGGCAATCCATCGCCGACACGGAGCGCTTACTGCGG
CAGGATGTACGAGAAAGCAGGGAAGCTGCCGCGGCGGGATCCCATGCGGC
AAGTGGCAGAGCCGATGGCACCGGCAGCGCGGAAGCGAGCGCGTTTCATG
ACGAAGCCGCCGTGCCATCCTACACGTAAATCTTCTCCTTCAAGACAAAG
GCGCTGTGTGGCACTGTGCGTTTAAAGTGCTTGGCTGTGGTTTCTCGCGC
GATGGCAGTACCTTTTTGACCCGCTTTTAACTGTTTCGCAAGGTATTGCA
TCTGTTTGAACGGTCCCCAGCCGCCGACCGAAACGGCTTACGGCGCACAT
CACGTTTCATAAAAAGAAGAGAACTGGAAGCCTTGCCCGTCCGATCGGTG
CATGCAATCCCCAGTTCAGATGTTACCGCAGGGGGGAAATGGTTTGAAAG
AGAGTTGTGAATGTTGAGTTGTGCACAAGCTACCAAAAGCTCTTAAGACG
GCACTGTACATATTACAGCCCGATTACCGCCATGAAAATATATCGTACAG
AGTCAACCTACTTGAGAACGGGAAATGAGAGAAGCCGCCATGCAGTAGGA
ATT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6789:158..1560+

>mRNA_P-wetherbeei_contig6789.1.1 ID=mRNA_P-wetherbeei_contig6789.1.1|Name=mRNA_P-wetherbeei_contig6789.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=582bp|location=Sequence derived from alignment at P-wetherbeei_contig6789:158..1560+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCGCCTATCTCCTACTCCGACGCCTGCGTTCCCGAAATCCAACGAGT
ACCAATGTGCGCCGCGCCAATTTCGCTTTCCATGCAGCGAGCGCGGTGCA
GAACTGCGGGCGCGTTTGGAAGAGTGGCAGGAGCGCTACCGGCAGTTGCG
ACGCCGCTCGCTTCTCGAAGTGGAGGGCTTTCGACGCGACGCCGCCGCAC
TCACGCAGCGGCTGCAACGCCTTCAGGCGGCCGGATTGGCGGCCGCCGGG
GGAGGACCAGGTGGCGGCGGCGGCGGCGGAGGCGGCGACGAGAGGTGTGG
CACCGGTGCAGAGGGGGAGGAACAGTCAAGAACGCCGAAGGCAGCGGCGG
CCGCCGCTGCAACGATTCCGGGAGCAAGAGCGGTAGAGACGCGCATGCCG
GCTGCGGCAGCGGGGGCTCGGCAAACAGCGCCGGCGCCGGTGAGGGCGTC
AGCGACGACGGCGCCAGCGACAAGAGCAAAGACAGCCGGGCTCCACCGTC
GGCGGCGGCGGACAGATGCTTCGAGGGGCGCCGAGGGCGCCGGGGCCATA
TGCGGGGGGGGCGGCCGCAGAATAACCAATGA
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