mRNA_P-wetherbeei_contig6788.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6788.1.1
Unique NamemRNA_P-wetherbeei_contig6788.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6788.1.1 vs. uniprot
Match: A0A6V1SWR7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SWR7_HETAK)

HSP 1 Score: 176 bits (445), Expect = 1.920e-51
Identity = 86/199 (43.22%), Postives = 125/199 (62.81%), Query Frame = 1
Query:    1 MFVLATIADTLKIEPNEFRESPVAALTDEADDKFSNRVLHDIGLCLFLYDFLEIGDAYIYPSDGSAHYKVKMRMVVFRPFIDEILVGRVFSSGPSGVGVTVNFTDYIFIPADKLQAPAVYNPATQLWSWRYQDDAETIETAENAETGAGEXXXXXXXXXXXADDANSFVMDIGEAIRFRVVGVHFTRVSTTTKGLQATT 597
            MFVLA + D++KI P+ F ++ + ALT+E D K++N+V+ D+GLC+ L+DF  IGDAYIYP DGSAHYK   R++VFRPF+ EI+ GR+ S    G+ V++ FTD I +P+  LQAP+ ++P  + W+W+YQD+                             +A   +M++G+A RFRV  + FT+V  T KGLQA T
Sbjct:    1 MFVLAVVKDSVKIHPSAFDKNQIQALTEEIDHKYANKVILDVGLCICLFDFEHIGDAYIYPLDGSAHYKATFRLLVFRPFVGEIITGRISSQSKEGIKVSLGFTDDIIVPSYLLQAPSQFDPEERAWTWKYQDED---------------------------GEAQDMLMEVGDACRFRVRTLDFTQVKATAKGLQAHT 172          
BLAST of mRNA_P-wetherbeei_contig6788.1.1 vs. uniprot
Match: A0A067CHA1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA1_SAPPC)

HSP 1 Score: 164 bits (415), Expect = 1.590e-46
Identity = 99/275 (36.00%), Postives = 146/275 (53.09%), Query Frame = 1
Query:    1 MFVLATIADTLKIEPNEFRESPVAALTDEADDKFSNRVLHDIGLCLFLYDFLEIGDAYIYPSDGSAHYKVKMRMVVFRPFIDEILVGRVFSSGPSGVGVTVNFTDYIFIPADKLQAPAVYNPATQLWSWRYQDDAETIETAENAETGAGEXXXXXXXXXXXADDANSFVMDIGEAIRFRVVGVHFTRVSTTTKGLQATTNFTETTATGSFGSXXXXXXXXXXXXXXXXXXXXXXXDTSLRPPVRHRSSSVDLGAAEKPQATAMQVIGSVNGDGLG 825
            MFVL  IAD ++I P  F     + LT+E D K++N+V+ D+GLC+ LYDF+EIGDAYI+PSDG++H +V  RMVVF+PFI E+L G++ S     + V+++F   I IP+  +Q P+ ++   +LW W++                               D+ + + M + E +RFRV  ++FTRV+ T KG+QAT     T A  S  S                               R RSSSVDL +   P+ +AMQ+IG+++ DGLG
Sbjct:    1 MFVLCRIADVIQIAPELFGTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSHTEVVFRMVVFQPFIGEVLKGKIISCTEEHIRVSMDFVQDIIIPSYAMQTPSFFDKNERLWEWKFPGKE---------------------------DEQDPYYMYLHEEVRFRVTNINFTRVTKTAKGIQATV----TEAADSASS-------------------------------RRRSSSVDL-SEHDPKPSAMQIIGTIDEDGLG 212          
BLAST of mRNA_P-wetherbeei_contig6788.1.1 vs. uniprot
Match: A0A024URS8_9STRA (DNA-directed RNA polymerase n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024URS8_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.640e-44
Identity = 94/275 (34.18%), Postives = 140/275 (50.91%), Query Frame = 1
Query:    1 MFVLATIADTLKIEPNEFRESPVAALTDEADDKFSNRVLHDIGLCLFLYDFLEIGDAYIYPSDGSAHYKVKMRMVVFRPFIDEILVGRVFSSGPSGVGVTVNFTDYIFIPADKLQAPAVYNPATQLWSWRYQDDAETIETAENAETGAGEXXXXXXXXXXXADDANSFVMDIGEAIRFRVVGVHFTRVSTTTKGLQATTNFTETTATGSFGSXXXXXXXXXXXXXXXXXXXXXXXDTSLRPPVRHRSSSVDLGAAEKPQATAMQVIGSVNGDGLG 825
            MFVL  +AD +++ P  F     + L +E D K++N+V+ D+GLC+  YDF+EIGDAY++PSDG++H  V  RMVVFRPFI EIL G++ +     + V++ F   I IP+  +Q P+ ++   +LW W++                               DD + + M + E +RFRV  ++FTRV  T  G+QA T   +T                               D S  P  R RSSSVDL   + P+  A+Q+IG+++ DGLG
Sbjct:    1 MFVLCRVADVIQVAPELFSADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYVHPSDGTSHTDVIFRMVVFRPFIGEILKGKIINCTEEHIRVSMEFMQDIIIPSYAMQNPSFFDKTERLWEWKFPG---------------------------REDDQDPYYMYLNEEVRFRVTNINFTRVLKTANGMQAVTEAADT-----------------------------KPDKSENP-TRRRSSSVDLSDTD-PKPAALQIIGTIDEDGLG 217          
BLAST of mRNA_P-wetherbeei_contig6788.1.1 vs. uniprot
Match: A0A7S3H250_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H250_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.060e-44
Identity = 107/267 (40.07%), Postives = 148/267 (55.43%), Query Frame = 1
Query:   25 DTLKIEPNEFRESPVAALTDEADDKFSNRVLHDIGLCLFLYDFLEIGDAYIYPSDGSAHYKVKMRMVVFRPFIDEILVGRVFSSGPSGVGVTVNFTDYIFIPADKLQAPAVYNPATQLWSWRYQDDAETIETAENAETGAGEXXXXXXXXXXXADDANSFVMDIGEAIRFRVVGVHFTRVSTTTKGLQATTNFTETTATGSFGSXXXXXXXXXXXXXXXXXXXXXXXDTSLRPPVRHRSSSVDLGAAEKPQATAMQVIGSVNGDGLG 825
            D +K  P++F       L ++ + K++NRVL  +GLC+  YDF+ IGD Y+YPS+GSA   V+ RMVVFRPF+ EI+ GR+ SSG  G+ ++  F + I IPA  LQAP VYNP   LW+W+Y                               +  N F+MDIGE +RF+V  + FT++S++ KGL ATT    T+ TG+   XXXXXXXXX                   P +R RSSS+ L   ++  A  MQ+IG++N  GLG
Sbjct:    2 DKIKTAPDQFGRDAAEVLKEQIEIKYANRVLLHVGLCITFYDFISIGDPYLYPSEGSAIQIVRFRMVVFRPFVGEIITGRLVSSGREGLKISTEFFEDILIPAALLQAPCVYNPVDGLWTWKY------------------------------GEPENDFLMDIGEEVRFKVRTLTFTQLSSSVKGLTATT----TSETGNDAGXXXXXXXXXPG-----------------PALRRRSSSMGLSPDDEIPAV-MQIIGAMNDFGLG 216          
BLAST of mRNA_P-wetherbeei_contig6788.1.1 vs. uniprot
Match: A0A6G0XPV7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPV7_9STRA)

HSP 1 Score: 159 bits (401), Expect = 2.310e-44
Identity = 94/275 (34.18%), Postives = 140/275 (50.91%), Query Frame = 1
Query:    1 MFVLATIADTLKIEPNEFRESPVAALTDEADDKFSNRVLHDIGLCLFLYDFLEIGDAYIYPSDGSAHYKVKMRMVVFRPFIDEILVGRVFSSGPSGVGVTVNFTDYIFIPADKLQAPAVYNPATQLWSWRYQDDAETIETAENAETGAGEXXXXXXXXXXXADDANSFVMDIGEAIRFRVVGVHFTRVSTTTKGLQATTNFTETTATGSFGSXXXXXXXXXXXXXXXXXXXXXXXDTSLRPPVRHRSSSVDLGAAEKPQATAMQVIGSVNGDGLG 825
            MFVL  IAD +++ P  F     + L +E D K++N+V+ D+GLC+  YDF+EIGDAYI+PSDG++H +V  RMVVFRPFI EIL G++ S     + V+++F   I IP+  +Q P+ ++   +LW W++    E                             + + M + E IRFRV  ++FTRV  T  G+QA T   +T                                     P R RSSSVDL   + P+ +A+Q++G+++ DGLG
Sbjct:    1 MFVLCRIADVIQVAPEFFAADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYIHPSDGTSHTEVIFRMVVFRPFIGEILKGKIISCTEEHIRVSMDFVQDIIIPSYAMQNPSFFDKTERLWEWKFPGREE---------------------------GQDPYYMYLNEEIRFRVTNINFTRVLKTATGIQAVTETADT------------------------------IPDKRENPTRRRSSSVDLSETD-PKPSALQIVGTIDEDGLG 217          
BLAST of mRNA_P-wetherbeei_contig6788.1.1 vs. uniprot
Match: A0A024GIJ1_9STRA (Uncharacterized protein n=3 Tax=Albugo TaxID=65356 RepID=A0A024GIJ1_9STRA)

HSP 1 Score: 155 bits (392), Expect = 5.760e-43
Identity = 97/275 (35.27%), Postives = 140/275 (50.91%), Query Frame = 1
Query:    1 MFVLATIADTLKIEPNEFRESPVAALTDEADDKFSNRVLHDIGLCLFLYDFLEIGDAYIYPSDGSAHYKVKMRMVVFRPFIDEILVGRVFSSGPSGVGVTVNFTDYIFIPADKLQAPAVYNPATQLWSWRYQDDAETIETAENAETGAGEXXXXXXXXXXXADDANSFVMDIGEAIRFRVVGVHFTRVSTTTKGLQATTNFTETTATGSFGSXXXXXXXXXXXXXXXXXXXXXXXDTSLRPPVRHRSSSVDLGAAEKPQATAMQVIGSVNGDGLG 825
            MFVL  I+D + I P  F       L +E D K+ N+V+ D+GLC+ +YDF+ IGDA I+PS+G +H +V+ RM+VFRPFI E+L G++ S   + + +T+ F   I IP+  LQ P+ ++   +LW W + D AE                               F MD+ E IRFRV  V+FT+V  T KG+QATT+  E+T      S                               R R SSVDL  ++ P  +AMQ++G+++ DGLG
Sbjct:    1 MFVLTRISDVIAIHPMLFDGDYTKVLKEEIDRKYCNKVIADVGLCISVYDFIAIGDALIHPSEGDSHTQVEFRMIVFRPFIGEVLKGKILSCNENHIRITMEFMQDILIPSYALQTPSHFDTYERLWVWTFTDSAE------------------------------KFHMDLNEEIRFRVTNVNFTQVHKTAKGMQATTS--ESTEKKDKASLKRGNLDDK----------------------RRRLSSVDLSDSD-PTPSAMQILGTIDEDGLG 220          
BLAST of mRNA_P-wetherbeei_contig6788.1.1 vs. uniprot
Match: A0A8K1CBB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBB5_PYTOL)

HSP 1 Score: 154 bits (389), Expect = 1.570e-42
Identity = 76/199 (38.19%), Postives = 116/199 (58.29%), Query Frame = 1
Query:    1 MFVLATIADTLKIEPNEFRESPVAALTDEADDKFSNRVLHDIGLCLFLYDFLEIGDAYIYPSDGSAHYKVKMRMVVFRPFIDEILVGRVFSSGPSGVGVTVNFTDYIFIPADKLQAPAVYNPATQLWSWRYQDDAETIETAENAETGAGEXXXXXXXXXXXADDANSFVMDIGEAIRFRVVGVHFTRVSTTTKGLQATT 597
            MFVL  I+D + + P+ F E     L +E D K++N+V+ D+GLC+ +YDF+ IGDA+++PSDG++H +V+ RMVVFRPF+ E+L GR+ S     + V+++F   I IP+  +Q P+ ++   +LW W+Y +  E                               F MD+ E IRFRV  ++FTRV+ T  G+QATT
Sbjct:    1 MFVLTRISDVIPVAPDLFEEDYQKVLVEEIDRKYANKVIADVGLCISIYDFVHIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCNEEHIRVSMDFVQDIIIPSYAMQTPSYFDTTERLWVWKYSEGQE------------------------------KFFMDLHEEIRFRVTSINFTRVTKTAHGIQATT 169          
BLAST of mRNA_P-wetherbeei_contig6788.1.1 vs. uniprot
Match: A0A7S2UM46_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UM46_9STRA)

HSP 1 Score: 154 bits (390), Expect = 4.400e-42
Identity = 106/279 (37.99%), Postives = 150/279 (53.76%), Query Frame = 1
Query:    1 MFVLATIADTLKIEPNEFRESPVAALTDEADDKFSNRVLHDIGLCLFLY-DFLEIGDAYIYPSDGSAHYKVKMRMVVFRPFIDEILVGRVFSSGPSGVGVTVNFTDYIFIPADKLQAPAVYNPATQLWSW--RYQDDAETIETAENAETGAGEXXXXXXXXXXXA-DDANSFVMDIGEAIRFRVVGVHFTRVSTTTKGLQATTNFTETTATGSFGSXXXXXXXXXXXXXXXXXXXXXXXDTSLRPPVRHRSSSVDLGAAEKPQATAMQVIGSVNGDGLG 825
            MFVL T ADT+ I+P++F +  +  + +E D+   NRV+ D+GL +  Y D + +GD  I   DG AH++V  R+VVFRPF++E+ +G +  S   G+ +++ F D IF+PA  +  P+ Y+  T LW W   Y +D E  +  E       E   XXXXXXXX   D   F M+IG  IRF+V  +HFTRV+ T KG+QATT  T  +   S                                 VR RSSS+DL  +EK  A+ MQ++ S+  DGLG
Sbjct:    1 MFVLTTEADTVAIQPDQFAQPTLECVHNEIDENLPNRVIMDVGLVICRYGDVMRVGDGLIVAGDGCAHHEVVFRLVVFRPFVEEVCIGSIIQSNEDGIRISMQFFDDIFVPAYWMLRPSQYDSKTGLWVWTPNYDEDEEAEQGGEAVAVKEEEGKVXXXXXXXXXPSDEYRFEMEIGSEIRFKVKAIHFTRVTNTAKGVQATTTTTAQSVPQS-----------------DRARALSVGSADGEQSVRKRSSSLDLSDSEKFPAS-MQIVASICEDGLG 261          
BLAST of mRNA_P-wetherbeei_contig6788.1.1 vs. uniprot
Match: K3WAI2_GLOUD (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=K3WAI2_GLOUD)

HSP 1 Score: 152 bits (385), Expect = 5.260e-42
Identity = 76/199 (38.19%), Postives = 115/199 (57.79%), Query Frame = 1
Query:    1 MFVLATIADTLKIEPNEFRESPVAALTDEADDKFSNRVLHDIGLCLFLYDFLEIGDAYIYPSDGSAHYKVKMRMVVFRPFIDEILVGRVFSSGPSGVGVTVNFTDYIFIPADKLQAPAVYNPATQLWSWRYQDDAETIETAENAETGAGEXXXXXXXXXXXADDANSFVMDIGEAIRFRVVGVHFTRVSTTTKGLQATT 597
            MFVL  ++D + + P  F       L +E D K++N+V+ D+GLC+ +YDF+ IGDA+++PSDG++H +V+ RMVVFRPF+ E+L GR+ S     + V+++F   I IP+  LQ P+ ++ A +LW W+Y +  E                               F MD+ E IRFRV  ++FTRV+ T  G+QATT
Sbjct:    1 MFVLTRLSDVIPVNPELFDADYTKVLVEEIDRKYANKVIADVGLCITIYDFVHIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYSEGQE------------------------------KFYMDMHEEIRFRVTNINFTRVTKTANGIQATT 169          
BLAST of mRNA_P-wetherbeei_contig6788.1.1 vs. uniprot
Match: A0A4D9CXH6_9STRA (RNA_pol_Rbc25 domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXH6_9STRA)

HSP 1 Score: 153 bits (386), Expect = 7.120e-42
Identity = 75/186 (40.32%), Postives = 111/186 (59.68%), Query Frame = 1
Query:    1 MFVLATIADTLKIEPNEFRESPVAALTDEADDKFSNRVLHDIGLCLFLYDFLEIGDAYIYPSDGSAHYKVKMRMVVFRPFIDEILVGRVFSSGPSGVGVTVNFTDYIFIPADKLQAPAVYNPATQLWSWRYQDDAETIETAENAETGAGEXXXXXXXXXXXADDANSFVMDIGEAIRFRVVGVHFT 558
            MF LA I DT+K+ P  F  + +  LT+E D K++NR++ D+GL + LYDF++IGDAY+YPSDG+AH++V  R++VFRPFI E+LVGRV     +G+ +++ F D IF+P+  LQ P+ ++P   +W W Y  D                            + A  + M++ E IRFRV  V+FT
Sbjct:    1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMDVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDE-------------------------PGEPAVRYPMEVDEFIRFRVRSVNFT 161          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6788.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6V1SWR7_HETAK1.920e-5143.22Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A067CHA1_SAPPC1.590e-4636.00Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A024URS8_9STRA1.640e-4434.18DNA-directed RNA polymerase n=4 Tax=Aphanomyces Ta... [more]
A0A7S3H250_9STRA2.060e-4440.07Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A6G0XPV7_9STRA2.310e-4434.18Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A024GIJ1_9STRA5.760e-4335.27Uncharacterized protein n=3 Tax=Albugo TaxID=65356... [more]
A0A8K1CBB5_PYTOL1.570e-4238.19Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S2UM46_9STRA4.400e-4237.99Hypothetical protein n=1 Tax=Attheya septentrional... [more]
K3WAI2_GLOUD5.260e-4238.19Uncharacterized protein n=21 Tax=Oomycota TaxID=47... [more]
A0A4D9CXH6_9STRA7.120e-4240.32RNA_pol_Rbc25 domain-containing protein n=4 Tax=Mo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6788contigP-wetherbeei_contig6788:1079..2290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog112098.XP_008610619.1
Preferred namePOLR3H
PFAMsRNA_pol_Rbc25,SHS2_Rpb7-N
Model size825
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03022
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05169,map00230,map00240,map01100,map03020,map04623,map05169
KEGG ModuleM00181
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015630,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons4
Evalue1.85e-47
EggNOG OGsCOG1095@1|root,KOG3297@2759|Eukaryota
Descriptiontranscription initiation from RNA polymerase III promoter
Cds size825
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186937.5685556-CDS-P-wetherbeei_contig6788:1078..12851683186937.5685556-CDS-P-wetherbeei_contig6788:1078..1285Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6788 1079..1285 +
1683186937.5820436-CDS-P-wetherbeei_contig6788:1510..17421683186937.5820436-CDS-P-wetherbeei_contig6788:1510..1742Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6788 1511..1742 +
1683186937.5923953-CDS-P-wetherbeei_contig6788:1787..19911683186937.5923953-CDS-P-wetherbeei_contig6788:1787..1991Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6788 1788..1991 +
1683186937.6052666-CDS-P-wetherbeei_contig6788:2108..22901683186937.6052666-CDS-P-wetherbeei_contig6788:2108..2290Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6788 2109..2290 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6788.1.1prot_P-wetherbeei_contig6788.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6788 1079..2290 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6788.1.1

>prot_P-wetherbeei_contig6788.1.1 ID=prot_P-wetherbeei_contig6788.1.1|Name=mRNA_P-wetherbeei_contig6788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=275bp
MFVLATIADTLKIEPNEFRESPVAALTDEADDKFSNRVLHDIGLCLFLYD
FLEIGDAYIYPSDGSAHYKVKMRMVVFRPFIDEILVGRVFSSGPSGVGVT
VNFTDYIFIPADKLQAPAVYNPATQLWSWRYQDDAETIETAENAETGAGE
GAGEGAGEGGGADDANSFVMDIGEAIRFRVVGVHFTRVSTTTKGLQATTN
FTETTATGSFGSGGGGDGGGGAINGGAGGGGSGGGDTSLRPPVRHRSSSV
DLGAAEKPQATAMQVIGSVNGDGLG
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mRNA from alignment at P-wetherbeei_contig6788:1079..2290+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6788.1.1 ID=mRNA_P-wetherbeei_contig6788.1.1|Name=mRNA_P-wetherbeei_contig6788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1212bp|location=Sequence derived from alignment at P-wetherbeei_contig6788:1079..2290+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGTCCTTGCGACCATCGCCGACACGCTGAAGATCGAGCCAAATGA ATTCCGCGAGTCGCCGGTCGCGGCGCTTACGGACGAGGCCGACGACAAAT TTTCGAACCGCGTCCTGCACGACATTGGCCTCTGCCTCTTCCTCTACGAC TTCCTAGAGATCGGCGACGCCTACATCTACCCCAGCGACGGCTCGGCGCA CTACAAGGTGCGGCAGCAGGCCTTTTCACAGATGCACGCAACTTTTGTTG GTTCTCACTTCCTTCTCTCTTCCTCGCTCACGCCCTACGCGGACAATGGC GTTGCGCCTCTCTTCTACTCTCTGATGGAAACCGCCTGTTTTTTTATGTT GTCTTTCTCTCGAAGCATTTACACCCCTCCAACGATACCACTCACCACCG CCGCTACGACTCCCTTCCTGCCGCCGACGCAGGTAAAGATGCGCATGGTG GTCTTCCGGCCGTTCATCGACGAAATCCTCGTCGGTCGCGTATTTTCGAG CGGCCCCAGCGGCGTTGGCGTCACCGTAAACTTTACTGACTACATCTTCA TCCCCGCCGACAAGCTGCAGGCGCCCGCCGTGTACAACCCCGCCACGCAG CTCTGGTCCTGGCGCTACCAGGACGACGCCGAAACCATCGAAACCGCCGA AAACGCCGAAACTGGTGGAGAAGGCGGCGAAACCGGCGGCGGCGAAGGCG CCGGCGAAGGCGCCGGCGAAGGCGCCGGCGAAGGCGCCGGCGAAGGTGGC GGCGCCGATGACGCCAACTCATTCGTGATGGACATCGGCGAGGCGATTCG CTTCCGGGTGGTCGGCGTCCATTTCACGCGGGTGAGCACTACCACTAAGG GGCTCCAGGCCACCACCAATTTCACCGAAACCACCGCCACCGGCAGCTTC GGCAGCGGCGGCGGTTCCGCCTCTGCCTCAGCCACTGCGGCCTTGGCGGC GCAAGCGACCGGAGCTGCCATCGCCAACGGCGCCGCCGCCACTGTTCCAA AAGCAGAAGCTGTTGCTGCCGCAGCACCAGGTGGTGACGGCGGCGGCGGT GCCATCAACGGCGGCGCCGGCGGCGGTGGAAGCGGCGGCGGCGACACATC GCTCCGGCCGCCCGTGCGGCATCGCAGCTCGAGCGTGGACCTCGGCGCGG CGGAGAAGCCGCAAGCGACGGCGATGCAGGTCATTGGGTCGGTGAACGGC GACGGACTGGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6788:1079..2290+

>mRNA_P-wetherbeei_contig6788.1.1 ID=mRNA_P-wetherbeei_contig6788.1.1|Name=mRNA_P-wetherbeei_contig6788.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=825bp|location=Sequence derived from alignment at P-wetherbeei_contig6788:1079..2290+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTTCGTCCTTGCGACCATCGCCGACACGCTGAAGATCGAGCCAAATGA
ATTCCGCGAGTCGCCGGTCGCGGCGCTTACGGACGAGGCCGACGACAAAT
TTTCGAACCGCGTCCTGCACGACATTGGCCTCTGCCTCTTCCTCTACGAC
TTCCTAGAGATCGGCGACGCCTACATCTACCCCAGCGACGGCTCGGCGCA
CTACAAGGTAAAGATGCGCATGGTGGTCTTCCGGCCGTTCATCGACGAAA
TCCTCGTCGGTCGCGTATTTTCGAGCGGCCCCAGCGGCGTTGGCGTCACC
GTAAACTTTACTGACTACATCTTCATCCCCGCCGACAAGCTGCAGGCGCC
CGCCGTGTACAACCCCGCCACGCAGCTCTGGTCCTGGCGCTACCAGGACG
ACGCCGAAACCATCGAAACCGCCGAAAACGCCGAAACTGGCGCCGGCGAA
GGCGCCGGCGAAGGCGCCGGCGAAGGTGGCGGCGCCGATGACGCCAACTC
ATTCGTGATGGACATCGGCGAGGCGATTCGCTTCCGGGTGGTCGGCGTCC
ATTTCACGCGGGTGAGCACTACCACTAAGGGGCTCCAGGCCACCACCAAT
TTCACCGAAACCACCGCCACCGGCAGCTTCGGCAGCGGCGGCGGTGGTGA
CGGCGGCGGCGGTGCCATCAACGGCGGCGCCGGCGGCGGTGGAAGCGGCG
GCGGCGACACATCGCTCCGGCCGCCCGTGCGGCATCGCAGCTCGAGCGTG
GACCTCGGCGCGGCGGAGAAGCCGCAAGCGACGGCGATGCAGGTCATTGG
GTCGGTGAACGGCGACGGACTGGGC
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