mRNA_P-wetherbeei_contig6746.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6746.2.1
Unique NamemRNA_P-wetherbeei_contig6746.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6746.2.1 vs. uniprot
Match: A0A835YSM6_9STRA (Malic enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSM6_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.220e-21
Identity = 45/65 (69.23%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 GFSMMRRPDVNKGLGFSPAEREENGLTGLLPPAYMNLDAQVMLAMEQMRRKSSDIEKYIFLQSLQ 195
            G+++++ P +NKGLGF+P ERE++GL GLLPP Y+NLDAQV+LAMEQ+R K+SDIEKYI+LQSLQ
Sbjct:   12 GYTVLKTPTLNKGLGFTPEEREKHGLKGLLPPGYLNLDAQVLLAMEQLRLKTSDIEKYIYLQSLQ 76
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BLAST of mRNA_P-wetherbeei_contig6746.2.1 vs. uniprot
Match: A0A097IUF9_9PHAE (Malic enzyme n=7 Tax=Sargassum TaxID=3015 RepID=A0A097IUF9_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.320e-16
Identity = 39/65 (60.00%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:    1 GFSMMRRPDVNKGLGFSPAEREENGLTGLLPPAYMNLDAQVMLAMEQMRRKSSDIEKYIFLQSLQ 195
            G+ +++ P +NKGLGF+ AERE  GL GLLPPA + L+AQV L +++MRRKS+ +EKY+FLQSLQ
Sbjct:   24 GYRVLKTPSLNKGLGFTSAERETMGLKGLLPPATLTLEAQVELTVQEMRRKSTPLEKYVFLQSLQ 88
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BLAST of mRNA_P-wetherbeei_contig6746.2.1 vs. uniprot
Match: A0A097IUH0_9PHAE (Malic enzyme n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A097IUH0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.480e-15
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 GFSMMRRPDVNKGLGFSPAEREENGLTGLLPPAYMNLDAQVMLAMEQMRRKSSDIEKYIFLQSLQ 195
            G+  M+ P +NKGLGF+  ER + GL GLLPPA + L+AQV + ME+ RRKSS ++KYIFLQSLQ
Sbjct:   20 GYRTMKTPSLNKGLGFTADERNKMGLKGLLPPAELTLEAQVQVTMEEFRRKSSPLDKYIFLQSLQ 84
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BLAST of mRNA_P-wetherbeei_contig6746.2.1 vs. uniprot
Match: A0A097IUJ6_9PHAE (Malic enzyme n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A097IUJ6_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.490e-15
Identity = 39/65 (60.00%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 GFSMMRRPDVNKGLGFSPAEREENGLTGLLPPAYMNLDAQVMLAMEQMRRKSSDIEKYIFLQSLQ 195
            G++ M+ P +NKGLGFS  ERE  GL GLLPPA + L AQV L ++++RRKSS ++KY+FLQSLQ
Sbjct:   25 GYTTMKTPSLNKGLGFSKVERETLGLKGLLPPATLTLGAQVELTIQELRRKSSALDKYVFLQSLQ 89
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BLAST of mRNA_P-wetherbeei_contig6746.2.1 vs. uniprot
Match: A0A097IUJ3_UNDPI (Malic enzyme n=3 Tax=Laminariales TaxID=2886 RepID=A0A097IUJ3_UNDPI)

HSP 1 Score: 80.9 bits (198), Expect = 6.990e-15
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 GFSMMRRPDVNKGLGFSPAEREENGLTGLLPPAYMNLDAQVMLAMEQMRRKSSDIEKYIFLQSLQ 195
            G++ M+ P  NKGLGF+ AERE  GL GLLPPA + L+ QV L M+++RRK S ++KY+FLQSLQ
Sbjct:   27 GYTTMKTPHRNKGLGFTMAERETRGLKGLLPPATLTLEDQVELTMQELRRKGSALDKYVFLQSLQ 91
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BLAST of mRNA_P-wetherbeei_contig6746.2.1 vs. uniprot
Match: A0A097IUJ0_9PHAE (Malic enzyme n=3 Tax=Ectocarpales TaxID=2877 RepID=A0A097IUJ0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 9.600e-15
Identity = 37/65 (56.92%), Postives = 52/65 (80.00%), Query Frame = 1 
Query:    1 GFSMMRRPDVNKGLGFSPAEREENGLTGLLPPAYMNLDAQVMLAMEQMRRKSSDIEKYIFLQSLQ 195
            G++ M+ P +NKGLGF+ +ER+  GL GLLPPA + L+ QV L M+++RRKSS ++KY+FLQSLQ
Sbjct:   47 GYTTMKTPSLNKGLGFTYSERDALGLRGLLPPAKLTLEDQVELTMQELRRKSSALDKYVFLQSLQ 111
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BLAST of mRNA_P-wetherbeei_contig6746.2.1 vs. uniprot
Match: D7FW76_ECTSI (Malic enzyme n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW76_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 1.290e-14
Identity = 37/65 (56.92%), Postives = 51/65 (78.46%), Query Frame = 1 
Query:    1 GFSMMRRPDVNKGLGFSPAEREENGLTGLLPPAYMNLDAQVMLAMEQMRRKSSDIEKYIFLQSLQ 195
            G++ ++ P  NKGLGF+ AERE  GL GLLPPA + L+ QV L M+++RRK+S ++KY+FLQSLQ
Sbjct:   12 GYTTLKTPSQNKGLGFTDAERETLGLRGLLPPATLTLEDQVELTMQELRRKTSALDKYVFLQSLQ 76
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BLAST of mRNA_P-wetherbeei_contig6746.2.1 vs. uniprot
Match: A0A097IUG2_SCYLO (Malic enzyme n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUG2_SCYLO)

HSP 1 Score: 79.0 bits (193), Expect = 3.280e-14
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 GFSMMRRPDVNKGLGFSPAEREENGLTGLLPPAYMNLDAQVMLAMEQMRRKSSDIEKYIFLQSLQ 195
            G++ M+ P +NKGLGF+  ERE  GL GLLPPA + L+ QV L M++ RRK S ++KY+FLQSLQ
Sbjct:   27 GYTTMKTPSLNKGLGFTNPEREALGLKGLLPPAILTLEDQVELTMQEFRRKCSALDKYVFLQSLQ 91
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BLAST of mRNA_P-wetherbeei_contig6746.2.1 vs. uniprot
Match: A0A8K1CA62_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CA62_PYTOL)

HSP 1 Score: 71.2 bits (173), Expect = 1.560e-11
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 GFSMMRRPDVNKGLGFSPAEREENGLTGLLPPAYMNLDAQVMLAMEQMRRKSSDIEKYIFLQSLQ 195
            G+  +R P VNKGL F+  ERE+ GL GL+P A  +++ +   AM Q+R+K+S IEKYIF+QS+Q
Sbjct:    3 GYQALRTPSVNKGLAFTSEEREQLGLRGLVPAAVTSVEFETKRAMAQLRKKTSPIEKYIFMQSMQ 67
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BLAST of mRNA_P-wetherbeei_contig6746.2.1 vs. uniprot
Match: A0A524PB70_9DELT (NAD-dependent malic enzyme n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A524PB70_9DELT)

HSP 1 Score: 70.1 bits (170), Expect = 3.980e-11
Identity = 35/65 (53.85%), Postives = 44/65 (67.69%), Query Frame = 1 
Query:    1 GFSMMRRPDVNKGLGFSPAEREENGLTGLLPPAYMNLDAQVMLAMEQMRRKSSDIEKYIFLQSLQ 195
            G  ++  P +NKG  F+  ER+  GL GLLPP    L+ QV+  ME +RRK+SDIEKYIFL SLQ
Sbjct:   16 GVDLLHDPHINKGTVFTEKERDVLGLRGLLPPHVSTLEQQVLRVMENIRRKTSDIEKYIFLVSLQ 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6746.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSM6_9STRA1.220e-2169.23Malic enzyme n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A097IUF9_9PHAE2.320e-1660.00Malic enzyme n=7 Tax=Sargassum TaxID=3015 RepID=A0... [more]
A0A097IUH0_9PHAE1.480e-1560.00Malic enzyme n=1 Tax=Ishige okamurae TaxID=233772 ... [more]
A0A097IUJ6_9PHAE1.490e-1560.00Malic enzyme n=1 Tax=Desmarestia viridis TaxID=623... [more]
A0A097IUJ3_UNDPI6.990e-1558.46Malic enzyme n=3 Tax=Laminariales TaxID=2886 RepID... [more]
A0A097IUJ0_9PHAE9.600e-1556.92Malic enzyme n=3 Tax=Ectocarpales TaxID=2877 RepID... [more]
D7FW76_ECTSI1.290e-1456.92Malic enzyme n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A097IUG2_SCYLO3.280e-1456.92Malic enzyme n=3 Tax=Scytosiphonaceae TaxID=2891 R... [more]
A0A8K1CA62_PYTOL1.560e-1150.77Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A524PB70_9DELT3.980e-1153.85NAD-dependent malic enzyme n=1 Tax=Deltaproteobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6746contigP-wetherbeei_contig6746:2123..2877 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FW76
Preferred nameME1
PFAMsMalic_M,malic
Model size462
Max annot lvl2759|Eukaryota
KEGG rclassRC00105
KEGG koko:K00027,ko:K00029
KEGG ReactionR00214,R00216
KEGG Pathwayko00620,ko00710,ko01100,ko01120,ko01200,ko02020,map00620,map00710,map01100,map01120,map01200,map02020
KEGG ModuleM00169,M00172
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004470,GO:0004471,GO:0004473,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005773,GO:0005774,GO:0005829,GO:0005886,GO:0005911,GO:0005975,GO:0006081,GO:0006082,GO:0006090,GO:0006091,GO:0006098,GO:0006099,GO:0006101,GO:0006108,GO:0006139,GO:0006140,GO:0006629,GO:0006631,GO:0006633,GO:0006725,GO:0006732,GO:0006733,GO:0006739,GO:0006741,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008270,GO:0008340,GO:0008610,GO:0009051,GO:0009055,GO:0009058,GO:0009060,GO:0009108,GO:0009117,GO:0009165,GO:0009506,GO:0009507,GO:0009536,GO:0009719,GO:0009725,GO:0009743,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010259,GO:0010941,GO:0015980,GO:0016020,GO:0016043,GO:0016053,GO:0016491,GO:0016614,GO:0016615,GO:0016616,GO:0016999,GO:0017076,GO:0017144,GO:0018130,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019682,GO:0019693,GO:0019752,GO:0022607,GO:0022900,GO:0030054,GO:0030145,GO:0030312,GO:0030431,GO:0030554,GO:0031090,GO:0031323,GO:0031974,GO:0032501,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033500,GO:0034641,GO:0034654,GO:0036094,GO:0042221,GO:0042592,GO:0042593,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043531,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046394,GO:0046483,GO:0046496,GO:0046686,GO:0046872,GO:0046914,GO:0046983,GO:0048037,GO:0048046,GO:0048856,GO:0048878,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0050897,GO:0051156,GO:0051171,GO:0051174,GO:0051186,GO:0051188,GO:0051193,GO:0051196,GO:0051259,GO:0051260,GO:0051262,GO:0051287,GO:0051289,GO:0055044,GO:0055086,GO:0055114,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0072330,GO:0072350,GO:0072524,GO:0072525,GO:0072592,GO:0080090,GO:0090407,GO:0097159,GO:0097367,GO:0098588,GO:0098805,GO:1901135,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1902031
Exons3
Evalue2.61e-15
EggNOG OGsCOG0281@1|root,KOG1257@2759|Eukaryota
EC1.1.1.38,1.1.1.40
Descriptionmalate dehydrogenase (decarboxylating) (NAD ) activity
Cds size243
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186934.1747804-UTR-P-wetherbeei_contig6746:2122..23321683186934.1747804-UTR-P-wetherbeei_contig6746:2122..2332Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6746 2123..2332 -
1683186934.2173142-UTR-P-wetherbeei_contig6746:2868..28771683186934.2173142-UTR-P-wetherbeei_contig6746:2868..2877Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6746 2869..2877 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186934.1873724-CDS-P-wetherbeei_contig6746:2332..24731683186934.1873724-CDS-P-wetherbeei_contig6746:2332..2473Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6746 2333..2473 -
1683186934.1974268-CDS-P-wetherbeei_contig6746:2679..27161683186934.1974268-CDS-P-wetherbeei_contig6746:2679..2716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6746 2680..2716 -
1683186934.2071528-CDS-P-wetherbeei_contig6746:2803..28681683186934.2071528-CDS-P-wetherbeei_contig6746:2803..2868Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6746 2804..2868 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6746.2.1prot_P-wetherbeei_contig6746.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6746 2333..2868 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6746.2.1

>prot_P-wetherbeei_contig6746.2.1 ID=prot_P-wetherbeei_contig6746.2.1|Name=mRNA_P-wetherbeei_contig6746.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=81bp
MMRRPDVNKGLGFSPAEREENGLTGLLPPAYMNLDAQVMLAMEQMRRKSS
DIEKYIFLQSLQASRRRYLTERRIRWEKLL*
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mRNA from alignment at P-wetherbeei_contig6746:2123..2877-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6746.2.1 ID=mRNA_P-wetherbeei_contig6746.2.1|Name=mRNA_P-wetherbeei_contig6746.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=755bp|location=Sequence derived from alignment at P-wetherbeei_contig6746:2123..2877- (Phaeothamnion wetherbeei SAG_119_79)
GGCTTCTCGATGATGCGGCGCCCCGACGTGAACAAGGGACTCGGCTTTTC
TCCTGCTGAGCGAGAGGAGAACGGGTGAGTCGAGAGAGCGAGCAAAACGG
GTGCAGCACCCGTTCGTCTTCGTTGCTAATCATGATCTCCTCTTTTTCCT
CTGCATACCAGGCTCACAGGGCTTCTTCCACCGGCATACATGAACCTTGT
GAGTAGTCAGTCCTATTCGCTTGATTTCTGCTGGACTTACCTTCTTTCTG
CCTTTTCACATTTGTATTATAATTTGGCGTGTTCCTCTTGCCCCGGCGCT
GAATCAAAATTTTCCTTAAAATACTGACTCGTATGATTCAGACAATGAGA
CCGTGCACGAAACCCTCTATTTCGTACATTCCCGAATCGTTACGCTTCCT
GTAGGACGCGCAAGTCATGCTGGCGATGGAGCAGATGAGGCGAAAGTCTT
CGGACATCGAAAAGTACATATTTCTGCAGTCCCTCCAGGCGAGCAGGCGT
CGATATCTCACCGAGAGACGCATTCGCTGGGAAAAGTTGCTATGAACAGC
CCTTTTTCCTTGTCTTATTTCGCTTGCTGGAAGCCCATTGACACCAATCG
GCGATGTCGTTTTACTGAAGGGATTCTTTGGCAAAGAGTTTTGGTGTATA
CTCGTGCTACTTTTCTGCCCCGAATCACTTTGAGACGCTTGTCGTTCAGC
CTGTTGCTGGCGTTTTGGCGAGCATTTTCTTCGTGCTTCGCAGACGAGAG
TTCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6746:2123..2877-

>mRNA_P-wetherbeei_contig6746.2.1 ID=mRNA_P-wetherbeei_contig6746.2.1|Name=mRNA_P-wetherbeei_contig6746.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=243bp|location=Sequence derived from alignment at P-wetherbeei_contig6746:2123..2877- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCGGCGCCCCGACGTGAACAAGGGACTCGGCTTTTCTCCTGCTGA
GCGAGAGGAGAACGGGCTCACAGGGCTTCTTCCACCGGCATACATGAACC
TTGACGCGCAAGTCATGCTGGCGATGGAGCAGATGAGGCGAAAGTCTTCG
GACATCGAAAAGTACATATTTCTGCAGTCCCTCCAGGCGAGCAGGCGTCG
ATATCTCACCGAGAGACGCATTCGCTGGGAAAAGTTGCTATGA
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