mRNA_P-wetherbeei_contig673.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig673.2.1
Unique NamemRNA_P-wetherbeei_contig673.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig673.2.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 6.330e-36
Identity = 187/661 (28.29%), Postives = 291/661 (44.02%), Query Frame = 3
Query: 1341 PAASLGGALVLQLQFAATLSLVDSENQSTSF-SGFADSLGWTNLWVSAD---NVHRAGGCIAAESSGVGGAVFLGNTVLAVVGLLVIFAVHMLVISGLEAYWLAHDAATFVAEDAERQGLTVAQMQSMRIMARQVSINGVEVVVDGAVADAAADRADGDGSDGCSGVYGGLLADEIAATAARGALHGGIGAGPSDRAGPAAADSEEGPAPAFDGS-LHSRSTLGAGAEAVAAALKTPPPQRALYRYESRLDPYDHVLRRSHSIWLYWPHLELLYLLFIFDGALTAQASMFR-SQCLILQIIAVVLFVVFPVSILVFVWIVCKRQVRSRDGAV----QYVASAPTSEGAFRR--LFRGWRGAVTEGSSVLEPFARGHWEPNSAVDNAGRDGDXXXXXXXTVRREADEFRIGFEPLYAEYTTRAVYYVVFRLVKSMALGLVAALVYGALLQTGLMFGIHALDFFVLLFFWPFDNTAIVVVELMLCFVDAASMAVVFFTNLLKGGGKAAAQAWDFVLLLQLVALVLIVVPLYVDTGLSMLHVVRKKFAKAARSDSGGRSASGWSASGGRRTSXXXGRTASAITAEQRAAEKAERDSWAQRRAKHTWTRYWWMMLRVNLAACFNNVRKSMLRRRYRSMATFPKTHPAIPHDGDSDSGRGSARGGG 3287
            P+A+L   L+ QLQF ATLSLVD      S+ + F   L W NLW  A+   N+        A +SG+G  VF+GN  L +  LL IF +H+  +SG+EA WL    A    + A R+G  + ++Q+         + G  ++           R + D            LAD                  PS  A        + P P+   S LH   +  +  E     L    P R+    E+RL P       S S WL++PH+EL++L F F+GA+ + AS  R S+C  +   A+   V++P  +L+FV +     VR R   +     Y       +   R   L   ++ +  E  S+     +G WE     D               V RE D FRIGFEP++ +YT R  +++V  LV+  A   V  ++  +++Q  L  G+H++ FF+L+F  PF N+ I  +E  +  +DA SM V   + L   G   AA     V++LQL++L  +V+P+Y+D    ++  +R +  KA                         G+T   +T E+R A    R S+ +R+    W   W  MLR N+ AC  +  + + + R+    T  ++ P  P D    +G G+  GGG
Sbjct: 1192 PSATLAFVLMTQLQFLATLSLVDYVMDEDSWLADFVTGLRWINLWWPAEVGQNIASDECAFEAGASGIGALVFVGNLALVIGILLAIFFMHVAAVSGVEALWLTKKRARENLDAARRRGAPIGELQAR--------LRGGRIIC----------RTNPD------------LAD------------------PSPFA-------RQAPQPSGTPSTLHEEESDMSDEEEGGRGLV---PMRS----ENRLSPVATCREHSTSAWLHFPHVELVFLFFAFEGAVASFASAIRNSECPEIFYTAIAAMVLYP--LLMFVTVFRTLLVRVRPNVLLIFKTYAEDGTNGDAPSRAGGLLSRFKSSWAENYSLFSWADKGQWETVQTPDRQ-------------VSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIEACVTAIDAISMGVFAASALWWEGTNRAAHLNTSVVVLQLLSLFALVIPVYLDAVTIVMGAIRNRIRKAL------------------------GKTGHELTDEEREARHYIR-SYTRRQ----WCGTWCTMLRHNVFACARDTSEGVRKPRF---TTAARSGPYPPLDRSKQAG-GTEDGGG 1742          
BLAST of mRNA_P-wetherbeei_contig673.2.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.030e-32
Identity = 193/675 (28.59%), Postives = 278/675 (41.19%), Query Frame = 3
Query: 1347 ASLGGALVLQLQFAATLSLVDSEN-QSTSFSGFADSLGWTNLWVSADNVHR---------------------AGGCIAAES-SGVGGAVFLGNTVLAVVGLLVIFAVHMLVISGLEAYWLAHDAATFVAEDAERQGLTVAQMQSMRIMARQVSINGVEVVVDGAVADAA-ADRADGDGSDGCSGVYGGLLADEIAATAARGALHGGIGAGPSDRAGPAAADSEEG--PAPAFDGSLHSRSTLGAGAEAVAAALKTPPPQR-------------------ALYRYESRLDPYDHVLRRSHSIWLYWPHLELLYLLFIFDGALTAQASMFRSQ-CLILQIIAVVLFVVFPVSILVFVWIVCKRQVRSR-----------------DGAVQYVASAPTSEGAFRRLFRGWRGAVTEGSSVLEPFARGHWEPNSAVDNAGRDGDXXXXXXXTVRREADEFRIGFEPLYAEYTTRAVYYVVFRLVKSMALGLVAALVYGALLQTGLMFGIHALDFFVLLFFWPFDNTAIVVVELMLCFVDAASMAVVFFTNLLKGGGKAAAQAWDFVLLLQLVALVLIVVPLYVDTGLSMLHVVRKKFAKAARSDSGGRSASGWSASGGRRTSXXXGRTASAITAEQRAAEKAERDSWAQRRAKHTWTRYWWMMLRVNLAACFNNVRKSM 3182
            A LG   V QLQF ATLSLVD    + +S  GFADS  W NLW  A                            GC    S  G+G  VF+GN  L    L++IF +H+ ++SG+EAYWLA   A   A  A R G+++ +  S             +  VDG   + A     D   S G + +        +A++  R  L       PS     AA  S+      PA D    SR        A     K                          L R ESRL P       S S WL++PH+EL++L F ++GA+ +Q S  R   C  + I A +  V +P  IL+FV ++    VR R                 D           S     ++  GW     E  S+     +G WE  +  DN G             RRE   FRIGFEPL+ ++T    ++V F LV+  ALG + AL+  ++LQ  L   +H L F +L+ F PF N+ I  +   L  +DA  MA++  +     G  AA +    V+LLQL AL  +++P+Y+DT L ++  +R +  K+  +                        T   +  E   AEK E D + +   + +W R W  ML  N+ AC ++ R+ +
Sbjct:  758 AILGAVAVTQLQFLATLSLVDDTGGEDSSLPGFADSFRWANLWPPASFAEEFIDTSDEGQQRRLXXXXXXXXXXGCSWDGSLGGLGSLVFIGNQGLVFGALVLIFLLHVSLVSGVEAYWLAKKRAKEEAARARRLGVSIGEYFS-------------DTHVDGREHEQAPVPEPDARPSGGTTDI-------SVASSFRRRRLR----RDPS-LLNAAATGSQRRLEKLPALDAPHRSRKVRDGSWVAEDGEKKEARSDDNLSGTDCSDYDEEGGGGLGTLTRAESRLSPVAECREHSRSAWLHFPHVELVFLFFAYEGAVASQVSALREAGCPPVMIAAGLALVFYP--ILMFVAVLRTFFVRVRPNTLIVFTPKEADDDTGDAGDAEEGQRARSASFLSKVRAGWE----EDHSLFAWANKGTWE-TAETDNEG------------TRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCMALLAVSASRWEGTAAAGKVDSVVMLLQLFALCALIIPIYIDTSLILIGAIRSRLQKSTTT------------------------TPQHVRTE---AEKEE-DLFVRHFIRRSWPRTWCTMLGKNIFACASDTREGI 1360          
BLAST of mRNA_P-wetherbeei_contig673.2.1 vs. uniprot
Match: D7G1L9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L9_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.310e-31
Identity = 166/566 (29.33%), Postives = 257/566 (45.41%), Query Frame = 3
Query: 1338 SPAASLGGALVLQLQFAATLSLVDSENQSTSF-SGFADSLGWTNLWVSADNV----------------HRAGGCIAAESSGVGGAVFLGNTVLAVVGLLVIFAVHMLVISGLEAYWLAHDAATFVAEDAERQGLTVAQMQSMRIMARQVSINGVEVVVDGAVADAAADRADGDGSDGCSGVYGGLLADEIAATAARGALHGGIGAGPSDRAGPAAADSEEGPAPAFDGSLHSRSTLGAGAEAVAAALKTPPPQRALYRYESRLDPYDHVLRRSHSIWLYWPHLELLYLLFIFDGALTAQ-ASMFRSQCLILQIIAVVLFVVFPVSILVFVWIVCKRQVRSRDGAVQYVASAPTSE-------GAFRRLFRGW-RGAVTEGSSVLEPFARGHWEPNSAVDNAGRDGDXXXXXXXTVRREADEFRIGFEPLYAEYTTRAVYYVVFRLVKSMALGLVAALVYGALLQTGLMFGIHALDFFVLLFFWPFDNTAIVVVELMLCFVDAASMAVVFFTNLLKGGGKAAAQAWDFVLLLQLVALVLIVVPLYVDTGLSMLHVVRKKFAKAARSD 2957
            +P+ ++   L+ Q+QF ATLSLVDS     S  S    +L W NLW   D+V                 RA G     +S +G  VFLGN  L    LL I  +H++++S +EAYWL+ + A      A+R+G+ +  + + R  A +V+ +           DA +D                   DE+AA+A+        GA   + A   AADS +               +G   E     +++ P        + R         RS S+WLY+PH+ELL+LLF F+GA+ +Q A+M    C  +   A    VV+PV +++  +    R  R R      +   P  E       G   R F    R  + E  S+      G WE     D              TVR E D+FRIGFEPL+ ++T +A ++ V+ L++   +   A LV  +++Q  L  G+H+L F +L+ F PF N+ I  +   L  +DAASMA++  T         A +    V++LQLVALV +++P+Y+D    +L  +R+K     +S+
Sbjct:   47 APSVTIAVLLLTQIQFLATLSLVDSTGAEDSLLSELTQNLRWVNLWPP-DSVGRTFSSGGERLFQQDGSRACGIEPTSASDIGALVFLGNIGLFTSLLLGIVVIHIVLVSAVEAYWLSKERAMEELTKAQRRGIPIRGLGARR--ASRVAHSP----------DAESDP------------------DELAASASN------DGAMSREHA---AADSVD---------------VGVDFEEDGIPIRSRPKGLRAMLADCRY--------RSSSVWLYFPHIELLFLLFAFEGAMASQLATMRGGGCPWVFYSACASLVVYPVLMIILSY----RTHRVRVAPDTLIVFKPVGEEENHGTDGTVPRSFLSKVRTGLKEDHSMFAWANTGAWETVETPDEE------------TVR-EGDQFRIGFEPLFVDFTKKASWFTVYFLLEMTGIACTAVLVDDSVVQLFLFCGLHSLSFLLLVIFRPFANSIINTMGACLTLIDAASMAMLADTAHRWQRTSRAKRMDTAVVVLQLVALVALIIPMYIDASTVILGAIREKIRSLTKSN 532          
BLAST of mRNA_P-wetherbeei_contig673.2.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.850e-30
Identity = 96/304 (31.58%), Postives = 160/304 (52.63%), Query Frame = 3
Query: 2061 YESRLDPYDHVLRRSHSIWLYWPHLELLYLLFIFDGALTAQASMFRSQCLILQIIAVVLFVVFPVSILVFVWIVCKRQVRSRDGAVQYVASAPTSEGAFRRLFRGWRG---AVTEGSSVLEPFARGHWEPNSAVDNAGRDGDXXXXXXXTVRREADEFRIGFEPLYAEYTTRAVYYVVFRLVKSMALGLVAALVYGALLQTGLMFGIHALDFFVLLFFWPFDNTAIVVVELMLCFVDAASMAVVFFTNLLKGGGKAAAQAWDFV----LLLQLVALVLIVVPLYVDTGLSMLHVVRKKFAKAAR 2951
            YE      +  L+R HS+W+Y+PH+ELL+LLF + GA  A+A M  S C  L ++ +   +VFPV + ++V  +   +VR  +  ++Y  +    +G F  LF+   G   A T GSS+ E   +G W   +  D               V  ++ +FRIGFEPL+ +YT +   YV F L + ++ GL+A  V    +QTG +  I+ LDF +L+   PF N+ I     M    DA ++ ++F+   L+      A   + V    LL+Q +A++  V+PLY+D  ++++  + KK ++ A+
Sbjct:  662 YEQEQVSTERFLKRHHSVWMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVVMGICALIVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCF--LFKACGGFCKAWTSGSSMFEWADKGQWASKNNED---------------VDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALLVQTLAILFFVIPLYLDAFITIVGTLCKKCSQLAK 948          
BLAST of mRNA_P-wetherbeei_contig673.2.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.030e-27
Identity = 166/656 (25.30%), Postives = 279/656 (42.53%), Query Frame = 3
Query: 1302 GGAITAGSTTQVSPAASLGGALVLQLQFAATLSLVDSEN-QSTSFSGFADSLGWTNLWVSADNVHRAGGCIAAE--------------------SSGVGGAVFLGNTVLAVVGLLVIFAVHMLVISGLEAYWLAHDAATFVAEDAERQGLTVAQMQSMRIMARQVSINGV---EVVVDGAVADAAADRADGDGSDGCSGVYGGLLADEIAATAARGALHGGIGAGPSDRAGPAAADSEEGPAPAFDGSLHSRSTLGAGAEAVAAALKTPPPQRALYRYESRLDPYDHVLRRSHSIWLYWPHLELLYLLFIFDGALTAQASMFRS-QCLILQIIAVVLFVVFPVSILVFVWIVCKRQVRSRDGAVQYVASAPTSE---GAFRRLFRGWRGAVTEGSSVLEPFARGHWEP-NSAVDNAGRDGDXXXXXXXTVRREADEFRIGFEPLYAEYTTRAVYYVVFRLVKSMALGLVAALVYGALLQTGLMFGIHALDFFVLLFFWPFDNTAIVVVELMLCFVDAASMAVVFFTNLLKGGGKAAAQAWDFVLLLQLVALVLIVVPLYVDTGLSMLHVVRKKFAKAARSDSGGRSASGWSASGGRRTSXXXGRTASAITAEQRAAEKAERDSWAQRRAKHTWTRYWWMMLRVNLAACFNNVRKSM 3182
            G A  A  +T  SP+A++   L  Q+QF ATLS VD+   + ++FS   ++L W NLW S          I ++                    +S VG  +F+GN  L    L++IF  H+LV S +EAYW+A   A  V   + R+GL+++++         ++++G    +  +D             DGS   S   G + + +     A     GG      +  GP                   R+T                      R  + +         S S WL++PHLEL++L F F+GA+T+Q +  RS     +   AV   V++P  +L+ V +    +V  +  A+   AS+ T E   G    L R   G   +  S+     +G WE   +A D A              RR+AD FRIGFEPL+A++T    +++++ L++   L  +A LV  + +Q  L   +H+L F +L+ + PF N+ +  V  M+   DA  M ++        G   AA+    V+++Q + + ++V+PLYVDT +S+  ++R +                                   +   +  A++AER+   +R     W R W+ M+  N+ AC  + R+ +
Sbjct:  131 GTAQAATQSTCRSPSATMAFVLTSQIQFLATLSFVDTTGAEESAFSDLTNNLRWVNLWPSESFSEGIASRIISDEPDQPSDEDDTTPSAISQTVTSNVGSLLFMGNLALFSGLLVIIFTSHVLVASVVEAYWVAKQRARKVISRSLRRGLSLSEIP--------IALSGTWSQQPTMD-------------DGSSAGSQSSGIMQSPQRMERQAVSPYDGGDSKSDEEEGGP-------------------RNT----------------------RPGNSIGQVSDCRELSQSPWLHYPHLELIFLFFAFEGAVTSQMAALRSANSSTILYAAVATLVLYP--LLMVVMVARTHRVWVQPDALIVFASSETEEALAGKPSTLSRTVSGLKND-FSLFSWADKGQWETVQTANDKA--------------RRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFANSVLNAVAAMVMLTDAVCMGMLALAAGTFNGTATAARMDTAVMVIQALCIAVLVIPLYVDTAVSIYGMIRNRKGS--------------------------------VDERENEADRAEREV-TKRLTLRLWGRAWFRMVFSNMFACLRDTREGI 674          
BLAST of mRNA_P-wetherbeei_contig673.2.1 vs. uniprot
Match: D8LN89_ECTSI (Liver stage antigen 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN89_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 1.240e-27
Identity = 158/572 (27.62%), Postives = 242/572 (42.31%), Query Frame = 3
Query: 1374 QLQFAATLSLV-DSENQSTSFSGFADSLGWTNLWVSAD------------NVHRAG---------------------GCIAAESSGVGGAVFLGNTVLAVVGLLVIFAVHMLVISGLEAYWLAHDAATFVAEDAERQGLTVAQMQSMRIMARQVSINGVEVVVDGAVADAAADRADGDGSDGCSGVYGGLLADEIAATAARGALHGGIGAGPSDRAGPAAADSEEGPAPAFDGSLHSRSTLGAGAEAVAAALKTPPPQRALYRYESRLDPYDHVLRRSHSIWLYWPHLELLYLLFIFDGALTAQASMFRSQC-LILQIIAVVLFVVFPVSILVFVWIVCKRQVRSR---------DGAVQYVASAPTSEGAFRRLFRGWRGAVTEGSSVLEPFARGHWEPNSAVDNAGRDGDXXXXXXXTVRREADEFRIGFEPLYAEYTTRAVYYVVFRLVKSMALGLVAALVYGALLQTGLMFGIHALDFFVLLFFWPFDNTAIVVVELMLCFVDAASMAVVFFTNLLKGGGKAAAQAWDFVLLLQLVALVLIVVPLYVDTGLSMLHVVRKKFAKAARSD 2957
            QLQF ATLSLV ++  + +    FA++L W NLW  A              + + G                     G    ES  +   VF+GN VL ++ L +IF +H+ V SG+EAYWLA   A      A+R+G+ V ++ S R+                                  S  +     +  +  + R A   G   G +D       D+EEG             T+G                       S+L        RS S+WL++PH+EL+YLLF F+GA+ AQ S  R    L++ I+AV+  + FPV +   V      ++RS+         D AV+  +   TS  +F    R  RG + E  S+     +G WE     D   +             R  D FRIGFEPL+ ++T    ++ V+ L++ +A  +V  +V  ++LQ  L    + + F +L+   PF N  I  +   +  +DAA MAV+  T    GG + A+Q    V+++QL+ L  I++PLYVDT   M+  +R K       D
Sbjct: 2195 QLQFLATLSLVGNTGTEDSKLYDFANNLRWINLWPPASFARSFTPASMYGELDQEGEDAXXXXXXXXXXXXXXXXXEGVENEESGDLSSGVFVGNLVLFLIILFIIFLIHITVASGIEAYWLAKRGAEKHVARAQRRGVPVREL-SARL----------------------------------SNPWAPFDPNSESQRSLRTAKTSGDDEGEADDT-----DAEEG----------MPETVG----------------------RSKLSKIAECRERSQSVWLHFPHVELMYLLFAFEGAVAAQVSAIRENATLLVLILAVLALLFFPVLMTFNVMCTFFGKIRSKKHIVFIPNADDAVEAESDLYTSVRSFGSKVR--RG-LKESYSMFAWSNKGEWESVDTPDEEDK-------------RARDWFRIGFEPLFVDFTGAGSWFAVYALIELVANAVVGVVVDNSVLQLSLFGAFNTVSFLLLVVLKPFANGIINFMGAAVYGIDAACMAVLAVTADKWGGTERASQVDSVVVIVQLLTLAAIIIPLYVDTAFMMVGSIRDKLRGVREDD 2678          
BLAST of mRNA_P-wetherbeei_contig673.2.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 1.390e-26
Identity = 101/338 (29.88%), Postives = 163/338 (48.22%), Query Frame = 3
Query: 2061 YESRLDPYDHVLRRSHSIWLYWPHLELLYLLFIFDGALTAQASMFRSQCLILQIIAVVLFVVFPVSILVFVWIVCKRQVRSRDGAVQYVASAPTSEGAFRRLFRGWRG---AVTEGSSVLEPFARGHWEPNSAVDNAGRDGDXXXXXXXTVRREADEFRIGFEPLYAEYTTRAVYYVVFRLVKSMALGLVAALVYGALLQTGLMFGIHALDFFVLLFFWPFDNTAIVVVELMLCFVDAASMAVVFFTNLLKG-------------GGKAAAQAW-----DF----------VLLL----------QLVALVLIVVPLYVDTGLSMLHVVRKKFAKAAR 2951
            YE      +  L+R  S+W+Y+PH+ELL+LLF + GA  A+A M  S C  L ++ V   +VFPV + ++V  +   +VR  +  ++Y  +    +G F  LF+   G   A T GSS+ E   +G W   +  D               V  ++ +FRIGFEPL+ +YT +   YV F L + M+ GL+A  V    +QTG +  I+ LDF +L+   PF N+ I     M    D  ++ ++F+   L+               G  + QAW     DF          VLL+          Q +A++  V+PLY+D  ++++  + KK ++ A+
Sbjct:  985 YEQERVSTERFLKRHQSVWMYFPHVELLFLLFAYQGASAAEARMIYSGCFPLVVMGVCALIVFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKGCF--LFKACGGFCKAWTSGSSMFEWAEKGQWASKNNED---------------VDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWMSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADTITLGLMFYATFLEPDDDDDADRLELVYAGALSVQAWFRVVCDFLDASPPARPPVLLVAGAVSLPTSAQTLAILFFVIPLYLDAFITIIGALCKKCSQLAK 1305          
BLAST of mRNA_P-wetherbeei_contig673.2.1 vs. uniprot
Match: A0A835ZA46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZA46_9STRA)

HSP 1 Score: 130 bits (326), Expect = 2.940e-26
Identity = 153/587 (26.06%), Postives = 238/587 (40.55%), Query Frame = 3
Query: 1365 LVLQLQFAATLSLVDSENQSTS-----------------FSGFADSLGWTNLWVSADNVHRAGGCIAAESSGVGGAVFLGNTVLAVVGLLVIFAVHMLVISGLEAYWLAHDAATFVAEDAERQGLTVAQMQSMRIMARQVSINGVEVVVDGAVADAAADRADGDGSDGCSGVYGGLLADEIAATAARGALHGGIGAGPSDRAGPAAADSEEGPAPAFDGSLHSRSTLGAGAEAVAAALKTPPPQRALYRYESRLDPYDHVLRRSHSIWLYWPHLELLYLLFIFDGALTAQASMFRSQCLILQIIAVVLFVVFPVSILVFVWIVCKRQVRSRDGAVQYVASAPT------------------------------SEGAFRRLFRGW-RGAVTEGSSVLEPFARGHWE-PNSAVDNAGRDGDXXXXXXXTVRREADEFRIGFEPLYAEYTTRAVYYVVFRLVKSMALGLVAALVYGALLQTGL---------MFGIHALDFFVLLFFWPFDNTAIVVVELMLCFVDAASMAVVFFTNLLKGGGKAAAQA-WDFVLLLQLVALVLIVVPLYVDTGLSMLHVVRKKFAKAA 2948
            +V QLQF +T SLVD+ NQST                  F  F DSL W NLW +AD +     CIA++++GVGG  F+GNTVL +   L IF +H+  +S +EA+WLA D A     ++   G    +  S                     +D   D            +  G  A   +   A+  L                                 +    +G EAV  A    P                 V RRSHS+WL++PH+ELL+LLF ++GA+ AQASM  S C  L   +V L V +PV +L   W V       R GA  Y+    T                              + G   R   G  RGA +EG S+     +GHWE P    D+  R           + REA  F IG+EP++ ++T +  YY++  L++ M   L++ALV                  +  ++A +  + + + PF N+ +   E     ++ A + + +   +        +   +   +LLQ  +LV+I++P+Y+D  L M  ++ ++  + +
Sbjct: 1239 MVAQLQFMSTTSLVDA-NQSTXXXXXXXXXXXXXXXXXXFRSFTDSLTWVNLWWNADMLVPDDSCIASDTTGVGGPTFVGNTVLVIGITLAIFVLHLAGVSLVEAFWLAKDKAR---HESGSSGHLSCRNDSXXXXXXXXXXXXXXXXXXXEASDDVMDTVM---------IGPGAFARNASKMRAQARL---------------------------------KKRRPSGQEAVFDAANDAPVDHXXXXXXXXXXXX--VRRRSHSVWLHFPHVELLFLLFAYEGAVAAQASMLESPCASLVAASVALLVAYPVLLLALAWRVVAAL---RVGAAVYIPHGETRLAHGGGXXXXXXXXXXXXXXXXXXXXXRQNPGEIVRAAWGTLRGAWSEGESIFAAGDKGHWEVPEGLQDDKDR-----------LEREA--FMIGYEPVFRDFTAKGSYYILVILLRMMGTSLISALVMNGAXXXXXXXXXXXXXXLCALYATNLLLAVVWRPFANSFLQFAECAALLINLACLLITWCGAVSAARDPTLSDVLYGAFMLLQCFSLVVIIMPVYLDMVLVMGGMLNRRLRRGS 1761          
BLAST of mRNA_P-wetherbeei_contig673.2.1 vs. uniprot
Match: A0A6H5JR60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR60_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.400e-26
Identity = 147/526 (27.95%), Postives = 226/526 (42.97%), Query Frame = 3
Query: 1341 PAASLGGALVLQLQFAATLSLVDSENQSTSF-SGFADSLGWTNLWVSAD---NVHRAGGCIAAESSGVGGAVFLGNTVLAVVGLLVIFAVHMLVISGLEAYWLAHDAATFVAEDAERQGLTVAQMQSMRIMARQVSINGVEVVVDGAVADAAADRADGDGSDGCSGVYGGLLADEIAATAARGALHGGIGAGPSDRAGPAAADSEEGPAPAFDGSLHSRSTLGA--GAEAVAAALKTPPPQRALYRYESRLDPYDHVLRRSHSIWLYWPHLELLYLLFIFDGALTAQASMFRS-QCLILQIIAVVLFVVFPVSILVFVWIVCKRQVRSRDGAVQYVAS---------APTSEGAFRRLFRG-WRGAVTEGSSVLEPFARGHWEPNSAVDNAGRDGDXXXXXXXTVRREADEFRIGFEPLYAEYTTRAVYYVVFRLVKSMALGLVAALVYGALLQTGLMFGIHALDFFVLLFFWPFDNTAIVVVELMLCFVDAASMAVVFFTNLLKGGGKAAAQAWDFVLLLQLVAL 2867
            P+A+L   L+ QLQF ATLSLVD      S+ + F   L W NLW  A+   N+        A +SG+   VF+GN  L    LL IF +H+  +SG+EA WL    A    + A R+G  + ++Q+         + GV ++                                                    R  P  AD    P+P    + H+  TL      E+  +  +     R   R E+RL+P       S S WL++PH+EL++  F F+GA+ + AS  R+ +C  +   A+   V+ P  +L+FV +     VR R   +    +         AP+  G F   F+  W     E  S+     +  WE     D               + RE D  RIGFEP++ EYT R  +++V  LV+ +AL LV  +V  +++Q  L  G+ ++ F +L+F  PF N+    +E  +  +DA SM V   + L   G   AA     V++LQL++L
Sbjct:  212 PSATLTFVLMTQLQFLATLSLVDYVMDEDSWLADFVTGLRWINLWWLAEVGQNIASDESAFEAGASGIRALVFVGNVALVKGILLAIFFIHVAAVSGVEALWLTKKPARENLDAARRRGAPIGELQAR--------LRGVRIIC---------------------------------------------------RTNPDLAD----PSPFSRQAPHASGTLSTLNEEESDMSDEEEGGRGRVPMRSENRLNPVATCREHSTSAWLHFPHVELVFQFFAFEGAVASFASAIRNYECPKIFYTAIAAMVLCP--LLMFVTVFRTLLVRVRPNVLLIFKTYAEGGTSGDAPSRAGGFLSRFKSSWE----ENYSLFSWADKRQWETAQTPDRQ-------------ISREGDWCRIGFEPVFVEYTKRGTWFIVISLVEWVALALVGVMVENSIVQLVLFCGLPSVIFLILMFLKPFANSVTNNIEACVTAIDAISMGVFAASALWWEGTDRAAHLNTSVVVLQLLSL 655          
BLAST of mRNA_P-wetherbeei_contig673.2.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 1.140e-24
Identity = 171/665 (25.71%), Postives = 269/665 (40.45%), Query Frame = 3
Query: 1317 AGSTTQVSPAASLGGALVLQLQFAATLSLVDSEN-QSTSFSGFADSLGWTNLWVS-----------------------------ADNVHRAGGCIAAESSGVGGAVFLGNTVLAVVGLLVIFAVHMLVISGLEAYWLAHDAATFVAEDAERQGLTVAQMQSMRIMARQVSINGVEVVVDGAVADAAADRADGDGSDGCSGVYGGLLADEIAATAARGALHGGIGAGPSDRAGPAAADSEEGPAPAFDGSLHSRSTLGAGAEAVAAALKTPPPQRALYRYESRLDPYDHVLRRSHSIWLYWPHLELLYLLFIFDGALTAQASMFRSQCLILQIIAVV-------LFVVFPVSILVFVWIVCKRQVRSRDGAVQYVASAPTSEGAFRR--LFRGWRGAVTEGSSVLEPFARGHWEPNSAVDNAGRDGDXXXXXXXTVRREADEFRIGFEPLYAEYTTRAVYYVVFRLVKSMALGLVAALVYGALLQTGLMFGIHALDFFVLLFFWPFDNTAIVVVELMLCFVDAASMAVVFFTNLLKGGG---KAAAQAWDFVLLL-QLVALVLIVVPLYVDTGLSMLHVVRKKFAKAARSDSGGRSASGWSASGGRRTSXXXGRTASAITAEQRAAEKAERDSWAQRRAKHTWTRYWWMMLRVNLAACFNNVRKSM 3182
            A  +T  +P++++   L  Q+QF ATLS VD    + ++ SG   +L W NLW S                              D+  R  G      S VG  +F+GN  L     ++IF+VH+L+ S +EAYWLA   A               + +  R +   +S +G                         S  + G  A +        AL                        P++D +  + ST       V  A +T        R  S +         S S WL++PHLEL++L F F+GA+T+Q S  RS        A V       L  +  +SIL F+    + +VR R  A+    S  T EG+  +  L+      + + SS+     +GHW   + V  A  D           RR+AD FRIGFEPLYA++T    ++ V+ L++   L  +A LV  + +Q GL   +H++ F +L+   PF N+ +  +  ++   DA  M ++     L  G     AAA   D V+++ Q + + ++VVPLYVDT L +   +R +       D+                                AA++AER+ +  RR    W R W+ M+  N+ AC  + R+ +
Sbjct:   92 ATQSTFRNPSSTMALVLTSQIQFLATLSFVDDTGVEGSALSGLTKNLRWVNLWPSQSFSEGVASWVLCNEPEPTSGEDDDSEEDGDSTQR--GISWTVISDVGSFLFMGNLALFAGFFVIIFSVHILLASAVEAYWLAKQRA---------------RNEIPRALGGDLSTSG------------------------SSTAWSGTRAIQSPQLMEHQAL------------------------PSWDSTGRNDSTN------VQEAARTNT------RAGSSIGQVSECRELSQSAWLHYPHLELVFLFFAFEGAVTSQVSALRSTSSSTVFYAAVATLTGCNLSRIATMSILGFILFDVRGRVRVRSDALIVFTSNKTDEGSTGKSTLYSKMVTGLKKDSSLFAWADKGHW---NTVQTADED----------ARRDADWFRIGFEPLYADFTQAGSWFTVYTLIEWATLACIAVLVDNSAVQCGLFCALHSMTFILLVVCKPFANSVLNTMGAIVMLTDAVCMGMLA----LSAGTFRMTAAADRIDIVVMVAQHLCIAVLVVPLYVDTLLLVWGAIRNRRGPVKTRDN--------------------------------AAQRAERE-FINRRTLRLWGRTWFNMVGSNVFACVRDTREGI 629          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig673.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWS4_ECTSI6.330e-3628.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN93_ECTSI1.030e-3228.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G1L9_ECTSI2.310e-3129.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3P1_ECTSI1.850e-3031.58Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5J9C2_9PHAE1.030e-2725.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN89_ECTSI1.240e-2727.62Liver stage antigen 3 n=1 Tax=Ectocarpus siliculos... [more]
A0A6H5LAH5_9PHAE1.390e-2629.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZA46_9STRA2.940e-2626.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5JR60_9PHAE3.400e-2627.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTJ3_9PHAE1.140e-2425.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig673contigP-wetherbeei_contig673:1872..8787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LIK9
Model size5385
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons7
Evalue1.44e-13
EggNOG OGsKOG3544@1|root,KOG3544@2759|Eukaryota
Descriptionstructural constituent of cuticle
Cds size3255
COG categoryD
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig673.2.1prot_P-wetherbeei_contig673.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig673 3967..8590 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.936585-UTR-P-wetherbeei_contig673:1871..23931683186932.936585-UTR-P-wetherbeei_contig673:1871..2393Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig673 1872..2393 -
1683186932.945651-UTR-P-wetherbeei_contig673:2555..39661683186932.945651-UTR-P-wetherbeei_contig673:2555..3966Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig673 2556..3966 -
1683186933.0312943-UTR-P-wetherbeei_contig673:8590..87871683186933.0312943-UTR-P-wetherbeei_contig673:8590..8787Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig673 8591..8787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186932.9570298-CDS-P-wetherbeei_contig673:3966..46411683186932.9570298-CDS-P-wetherbeei_contig673:3966..4641Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig673 3967..4641 -
1683186932.9698803-CDS-P-wetherbeei_contig673:5000..55941683186932.9698803-CDS-P-wetherbeei_contig673:5000..5594Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig673 5001..5594 -
1683186932.9786556-CDS-P-wetherbeei_contig673:5831..63321683186932.9786556-CDS-P-wetherbeei_contig673:5831..6332Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig673 5832..6332 -
1683186932.9875095-CDS-P-wetherbeei_contig673:6602..68301683186932.9875095-CDS-P-wetherbeei_contig673:6602..6830Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig673 6603..6830 -
1683186933.0062382-CDS-P-wetherbeei_contig673:7176..79671683186933.0062382-CDS-P-wetherbeei_contig673:7176..7967Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig673 7177..7967 -
1683186933.0198576-CDS-P-wetherbeei_contig673:8124..85901683186933.0198576-CDS-P-wetherbeei_contig673:8124..8590Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig673 8125..8590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig673.2.1

>prot_P-wetherbeei_contig673.2.1 ID=prot_P-wetherbeei_contig673.2.1|Name=mRNA_P-wetherbeei_contig673.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1085bp
MALLRFSSGRMVLSDVLGLLGGLNAPTLPPFYSFLGLTASNSSSSDGGGV
EQPFVARLSASSLADGAAFSAAAVWCVSGTNLDGGGGVGAVTGMAASVDG
ASVTVVGTGDSAGFVVRLSASNGTVTWQVATAAGSGVEAVTLDDDDDVIV
VGFTNGTDGASSVLARKLYGSDGDTVWTLSSNSTANGTSTAGAAYGVTAD
GNDSVVVTGVDDDSAAFVMLLSADSGASSCRYSFVATDGGATSGMAVAAD
GAGDGSGVTVAGTTNGSLFGTSSGGTDAFSVGFDMSSTDVCEDGSDATLT
EEGFISGSTGDTAATTVSVAVAVAGVAVVVAAAAATGSTAAAAAAAGGAG
AGGGGGAAAGTTTATTTTGGAITAGSTTQVSPAASLGGALVLQLQFAATL
SLVDSENQSTSFSGFADSLGWTNLWVSADNVHRAGGCIAAESSGVGGAVF
LGNTVLAVVGLLVIFAVHMLVISGLEAYWLAHDAATFVAEDAERQGLTVA
QMQSMRIMARQVSINGVEVVVDGAVADAAADRADGDGSDGCSGVYGGLLA
DEIAATAARGALHGGIGAGPSDRAGPAAADSEEGPAPAFDGSLHSRSTLG
AGAEAVAAALKTPPPQRALYRYESRLDPYDHVLRRSHSIWLYWPHLELLY
LLFIFDGALTAQASMFRSQCLILQIIAVVLFVVFPVSILVFVWIVCKRQV
RSRDGAVQYVASAPTSEGAFRRLFRGWRGAVTEGSSVLEPFARGHWEPNS
AVDNAGRDGDGNGSGSGTVRREADEFRIGFEPLYAEYTTRAVYYVVFRLV
KSMALGLVAALVYGALLQTGLMFGIHALDFFVLLFFWPFDNTAIVVVELM
LCFVDAASMAVVFFTNLLKGGGKAAAQAWDFVLLLQLVALVLIVVPLYVD
TGLSMLHVVRKKFAKAARSDSGGRSASGWSASGGRRTSSGGGRTASAITA
EQRAAEKAERDSWAQRRAKHTWTRYWWMMLRVNLAACFNNVRKSMLRRRY
RSMATFPKTHPAIPHDGDSDSGRGSARGGGSSGSGGSNQHNRSDHNDRSD
RSSSARTTSANGLFNRHTISESEIPMRHPEIGAE*
back to top

mRNA from alignment at P-wetherbeei_contig673:1872..8787-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig673.2.1 ID=mRNA_P-wetherbeei_contig673.2.1|Name=mRNA_P-wetherbeei_contig673.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=6916bp|location=Sequence derived from alignment at P-wetherbeei_contig673:1872..8787- (Phaeothamnion wetherbeei SAG_119_79)
TTTTGCAATTGTTGGTGTGCATAATGGATGGTCGGTGTGTGCTAAGGGAG AGCGCCAGCTTCCGTTAGTTTTTGTTTATTTTCTAAGGTATTTGCCTGTA TGCTCAAGCGTATAGTCGATGCAATGGTTTTCGCGCGAACGACAGGCACT TTGGCTTCATTTATTGGCTTCAGGGCTGGAGAAGAACGTCATTGCGCATG GCCTTGCTCCGGTTCAGCTCTGGACGCATGGTCTTATCAGATGTCCTCGG GTTGCTCGGTGGATTGAATGCACCCACACTGCCTCCCTTTTATTCGTTCC TGGGGCTGACAGCCAGCAACAGCAGCAGCAGCGATGGCGGCGGCGTGGAG CAGCCGTTCGTGGCCCGGCTGAGCGCCTCCTCTCTCGCTGACGGCGCCGC TTTTTCCGCTGCCGCTGTGTGGTGCGTCAGCGGCACGAACCTCGACGGGG GCGGCGGCGTCGGCGCCGTCACCGGTATGGCCGCCAGCGTCGACGGCGCC AGCGTAACCGTCGTCGGAACGGGGGACTCGGCGGGGTTTGTGGTGCGGCT GTCGGCGTCGAACGGCACGGTGACGTGGCAGGTGGCGACGGCCGCCGGCA GCGGCGTCGAGGCGGTGACGCTCGACGACGACGACGACGTCATCGTCGTG GGCTTCACGAACGGTGGGTGCTTGAATTTCTGAGAGCTGAGCGTTGGCTT GATGCCTGCATTTGTCGACATGCCAACAGTTTTCATACCAACGATCCCAG GCCTCAAATTAAAAGGTTATCGCTCCCTTATCCCTGTCTCCATTCTTCGT TTGCGCCACAAGCAACGCAGGCACAGACGGCGCCTCGAGCGTGCTGGCGC GGAAACTCTACGGATCCGACGGAGACACGGTTTGGACGCTCAGCAGCAAC AGCACGGCCAACGGCACGAGCACCGCCGGCGCCGCCTACGGCGTGACCGC CGATGGCAACGACTCCGTCGTCGTTACCGGCGTCGACGACGACTCGGCGG CCTTCGTCATGCTACTTTCCGCCGACAGCGGAGCCTCCTCCTGCCGCTAC AGCTTCGTGGCGACGGATGGCGGCGCCACGTCGGGCATGGCGGTCGCGGC GGACGGTGCCGGCGACGGCAGCGGCGTGACCGTCGCCGGCACGACGAACG GCTCATTGTTCGGCACGAGCAGCGGCGGCACCGATGCCTTTTCGGTGGGC TTTGATATGAGTTCGACGGACGTATGCGAGGACGGCAGCGACGCGACCTT GACCGAAGAGGGCTTTATCAGCGGGTCGACGGGCGACACGGCTGCGACGA CCGTCTCCGTGGCAGTGGCTGTGGCGGGGGTGGCGGTCGTCGTGGCGGCG GCGGCCGCCACCGGCTCCACTGCGGCGGCGGCGGCGGCGGCGGGCGGCGC CGGCGCCGGCGGCGGCGGCGGAGCGGCGGCGGGCACCACGACAGCGACGA CGACGACCGGCGGCGCGATCACAGCGGGTTCAACGACTCAGGTGTCACCG GCGGCCAGCCTCGGCGGGGCGCTCGTGCTGCAACTGCAGTTCGCGGCGAC GCTGAGCCTCGTGGACTCGGAAAATCAGTCGACCAGCTTTTCCGGCTTCG CCGACTCGCTGGTGAGTTGGGGAGTGGGGGACGGGGTTCGGGCGCTGCTT CACGTATTTCTGTTTCGGCTGTGGAAAGATTGTTAATTCGTCTGTGCTTC AACCGTTGCAGTTGTGAGCGCGGGTGGCGGTATTTAGAGAGGCATCCGTG TTTGCGGCTGGCAGGGTCGGTCTCCCGAAAGGAAATGAGAAAGAGACAAA TGTGCTAAGCAGTCGTGCTGTGGCGTTCATCCTGTTCCAAGCAAGCGTCA CCGTTGCCGACAGGCCAACTTCCCGGTTTTCTTATTCTGACTCGCCGACC GTCTTTTTGCCGGCGCCCTGCCCCGCTGCTTGCTCGCTCACCCTGAAAAA CTCTCAGGGGTGGACCAACCTGTGGGTGTCGGCAGACAATGTTCACAGAG CCGGTGGATGCATCGCAGCTGAGTCCTCCGGCGTCGGCGGCGCCGTCTTC CTCGGCAACACCGTGCTGGCGGTGGTCGGCCTGCTGGTCATCTTTGCGGT GCACATGCTGGTCATTTCGGGGCTCGAGGCGTACTGGCTGGCGCACGACG CCGCCACCTTCGTAGCCGAGGACGCCGAGCGGCAGGTGCGCTTCGCTTTT GCGCGGCGTGCTAGCTTACGTGCTCGTGTTGCGCCAGGACTGGGGGGCGG GGAGTTCTGTTACTTCTCTTTTTGGAGGGGGCCTTTAGTTTGATCAGCTT GTGCGTGAGGTGTTTGGTCGTTGCCTCGTGGAACTGAGACCGCGGTGCAT GCTGGCTGACTTGCCATACTTCCGTCGTTGCGATACCAATGTTACGCCCT TTGTTATCCCCTCTTATTGTTCCGTGCTCTTCTTCTGTCCTCTTTCACTC TCCAGGGCTTGACGGTCGCCCAGATGCAGAGCATGCGGATCATGGCGCGC CAGGTGTCTATCAATGGGGTCGAAGTCGTGGTGGACGGCGCTGTCGCCGA CGCTGCGGCTGACCGCGCCGACGGCGATGGCAGTGACGGCTGTTCGGGCG TCTACGGCGGCCTCCTCGCCGACGAGATCGCCGCCACCGCCGCCCGCGGC GCCCTTCATGGCGGCATCGGCGCCGGTCCGTCCGATCGCGCCGGTCCCGC TGCCGCGGACTCGGAGGAGGGTCCGGCCCCGGCCTTCGACGGTTCGCTCC ACAGCCGATCGACGCTGGGCGCAGGGGCGGAGGCCGTGGCGGCGGCTCTG AAGACGCCGCCGCCGCAGCGGGCGCTGTACCGCTACGAGTCGCGGCTGGA CCCATATGACCACGTTTTGCGGAGGTCGCACTCGATCTGGCTGTACTGGC CGCACCTCGAGCTGCTCTACCTGCTGTTCATCTTCGACGGAGCGCTCACC GCACAGGTGCAGCCGACCAGCTAGCCTGCCAGCTGAGGAAGGAGGAGGGT ATAGGCAGAGAAGCGCCCCTCTGAAGGTGTTTTGCTGCTTTCTTTGCCGT GTGTCAGGGCAGCGCGGCATCAGTGAGTAGTTTATTCCTTTCTCCTTTTT GGAAACTCCTCTTCATATGACGCCTTTTCGTGCCCGCTCGGTGTTTTACT TGTCCCGCTTACCCTGTTCGTCCGCCCGTCTGTTCATCCACAGGCGTCCA TGTTCCGGAGCCAGTGCCTGATACTGCAAATCATTGCCGTGGTGCTCTTC GTTGTCTTCCCCGTCAGCATTCTCGTCTTCGTCTGGATTGTCTGCAAGCG CCAGGTCCGCTCCAGGGACGGCGCCGTTCAGTACGTCGCTTCCGCACCGA CCAGCGAAGGCGCCTTCCGCCGCCTCTTCCGGGGCTGGCGTGGCGCCGTC ACGGAGGGCTCCTCCGTCCTGGAGCCGTTCGCGCGCGGTCACTGGGAGCC GAACTCGGCGGTGGATAACGCCGGACGTGACGGAGACGGGAACGGGAGCG GGAGTGGAACTGTCCGGCGCGAGGCGGACGAGTTCCGGATCGGGTTTGAG CCGCTGTACGCCGAATACACAACGCGGGCCGTCTACTACGTTGTGTTCCG GCTGGTCAAGTCGATGGCGCTCGGGCTGGTGGCGGCGTTGGTCTATGGTG CGCTGCTGCAGACGGGGCTCATGTTTGGCATCCATGCTCTGGACTTCTTT GTGCTGCTCTTTTTTTGGCCGTTCGACAACACAGCCATTGTCGTCGTCGA GCTCATGCTGTGCTTCGTCGACGCAGCGAGCATGGCGGTGCGTTCAGCGA TCAGAGAGTCAGGCTTTTGCCCGTGGAGTGGCTATCCATTAGACGGCGGC TGTCTGCGTGGCGGCTGGTTTTGCCAGGCGGCTGGATTTGCCGGGCGGCT GGTTTTGCGGGGCGATTGCCCTTTTCGCTGCGCTTAACCCCTGGCTTCTG GCGTTCTGGTAGCACGTTTCCGTTGTGCTTTCCGATGCCCGTGATTGTAC CGCCGCTGGTAATGTGAGGTTTTCCTTCCCGCGGGAGGAATTCGTTGTGG CGATTCCGATCCAGATCATGACCGTTTCGTCTGGTCCCTCTTCGGCCGCG GCCGGCACCCCTCATTTTGGCCTCGTCCGGACTCTCGCGACGGCAGGTGG TCTTCTTCACGAACCTGCTCAAGGGAGGAGGCAAGGCTGCCGCCCAGGCG TGGGACTTTGTCCTGCTCCTTCAACTGGTGGCGCTCGTCCTCATCGTAGT CCCACTCTACGTCGACACGGGCCTCAGCATGCTTCACGTCGTCCGCAAGA AGTTCGCCAAGGCGGCGCGCAGCGACAGCGGCGGCCGCTCGGCCAGCGGG TGGAGCGCGAGTGGAGGCCGCCGGACCTCCAGCGGAGGAGGGCGGACGGC CAGCGCCATTACGGCGGAGCAGCGGGCGGCGGAGAAGGCGGAGCGGGACA GCTGGGCGCAGAGGCGTGCCAAGCACACGTGGACGCGCTACTGGTGGATG ATGCTGCGCGTCAACCTTGCGGCGTGTTTCAACAACGTCCGCAAGTCCAT GCTGCGGCGCCGCTACCGGAGCATGGCGACCTTCCCGAAGACGCACCCCG CCATACCGCACGACGGCGACTCGGACAGCGGGCGGGGCAGCGCCCGCGGT GGCGGCAGCAGCGGCTCCGGCGGTTCAAATCAGCACAACCGGAGCGACCA CAACGACCGGAGCGATCGGAGCAGCAGCGCCAGGACAACTTCGGCGAACG GCCTCTTCAACCGCCACACCATCTCCGAGTCGGAGATTCCGATGCGACAT CCAGAGATTGGCGCCGAGTAGAAACGCCGCTCTTGAATCCGTACCGCCGT TTCGGCGCCGGCGATTGCGGTCGGCAAGCGCCATCGCCGTCACTGGCGCC GGGGGTTGGGAGCGGTCGCTTGCTGTGGGCCCGCAAGAGCCCGCTCTCGG GAGCACGTTCGGGACGGCTCTAAGAAGGCGCCGTCCTCCGCCCTAGCAGT TTGTTGTAGCGGGATTACCGTGGTTCCGCGCGGTCGCAGCCGCGGCAGGC GTTGGTTTTGCATTCTTCTGGGTTTGAGAAGGTTCCGCCCTCCACCCGGC GGTGGCACTTTCTTTTCTTTGATTTCACTGGTGGGGGAAAACTGCCTTCT AGACGGCGCGTATCTGTCCTCTTCTTGGAGAGTGACCTCTGTGAGAAGGG TTCGGAGGGAGGGAGAAAGGGGTGGGGTGACGAGCAGGCTTGAGTGGCTG CGCCGCAGACTGTCGGCTGCCGCCTTCTAAATGGCGGCGGCGGTTAGGTC CACGGGGGCTGCTTTCCGGAGGAATGCGCCGCGTCGGAAGTCGGCAAAGC TTGGCACGTCACTCACGCCAAGCCGCCGCCGCGGGGCTTTTTGCATCTGC CGCCATGTGGCTTTTAGAGACATATAGTGATGGGGAGGGATGGGGGAACA GCCTTATGAGCGCTCAGCGTCCTGGTATTCTAATGGGCACACTCGTTCTG TTTATGTATCTGCAACAGCCCTTCTCGTGCTGAGACTCAGCATGAGCAGC TTTGGTTCGTTGCGAGTCATGGTAAGCGCATGCCAAGGTAGCAACGCACG GCATGCGAAAAACAGCTTGAAAACCCGTCTGCGGTCTGTAGAAGCAACGG GAGACACTTAGAGGGAAGGGTGTAAGTTTCTTTGATGGTGATGCGTCTCC AATAAGCGGGATTTCCAGGCTAGTGCCTGCTTACACAAGTCTGTGTCATC TCTCAGTATCAGGATCCGCATCTCTTGACCCTGCTATTGCCGGCGCGACT ACCCGCGGACCATGACCCGTGGATGAGGGCAGATCAGGAATTACCGCCAC TGCCGCTGCCACTGTTGCTCTCGCTGTTGTCGCTGCAAGCGGTGGTGGTG GCAATGCACCTGTTTCGCCTCCTAATGCAAGCCCCGCTATCGCCACACTC GGTGCTGCCTCCCGTATTAGCGGCTGTGGCGCCGCCGCTGGCGGGACAAG AATGACAGGAAGCGACGGCAATGCCGATTCGGCAGGCACGAAGGTTCCGC CTGCCGCGAACGCCGCCAACGAGGTGACCGCCTCCGGACGGCCGAAAAGC TGCAAGGCCACACCAACGCGGGCCGACACTTCGGGCGGCAGCGCCGCGGC GATCAGCGAGAGGATGGATTCGGCGTCGCGGTACCGATCCGAGATGTGGC AAATCACCACCTGCTGCATCGGCGCCAGCCTGGACGGATCGACATTTTGA AAGCTGGGCAGAGATGGTTGGAAACTAGCTTGGTATTAAAGGATTTAGGG TGAATAGAGCACGCAAAGCGGCGGTGGTTGCGATGAATGGAGCCGGAAGC AAATTAAAGAGCTAAGCCCCATAGCGGCCGTTCTTGCACACCTGCCGATG CAGGCAACGATGTCGTTGAGGTGGATGTGCTGCCATTTTCTGGCGGAGTC TTCGGGGCCGTCCAGATACGTCACCTGCCACCATCACCGCCACCGCAGCC GCCGCCGCAGCCAAAGCAGCATCAGAAGCAACGTTTTAAATGAGAGCGGA ACAGGCGCAGAGCATGTGGGTTCCCGTCAAGGTCAAGGTTTCAGCAGCGC CGCAAGCGGAGCTTGCAAGCCTCCTGGAAGGACTTAACGGCACGCCTTCG TTGGAGGCAAATGCCGCCATGAAAAGATCGCCGCATCGTCGACAGCTCAC CAAGTGTCGCATACCCTGTCCCGACCATCGGCAGCGGGCCGCTTCCTCAA GCTGCTCTGAACAAGTATCATGCAAGGAAGAAGACCATCCATATCAATAT AACCTCTTTTGCCCGCCCGCCCGCAACGCACCTCGAGCATGAGCAGCCGC GCCGCCCAGACGCACGGCACGGATAGCAGCGCCGCCATCTCAGTGTCTCC CGAGTATGCCACCTCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig673:1872..8787-

>mRNA_P-wetherbeei_contig673.2.1 ID=mRNA_P-wetherbeei_contig673.2.1|Name=mRNA_P-wetherbeei_contig673.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3255bp|location=Sequence derived from alignment at P-wetherbeei_contig673:1872..8787- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCTTGCTCCGGTTCAGCTCTGGACGCATGGTCTTATCAGATGTCCT
CGGGTTGCTCGGTGGATTGAATGCACCCACACTGCCTCCCTTTTATTCGT
TCCTGGGGCTGACAGCCAGCAACAGCAGCAGCAGCGATGGCGGCGGCGTG
GAGCAGCCGTTCGTGGCCCGGCTGAGCGCCTCCTCTCTCGCTGACGGCGC
CGCTTTTTCCGCTGCCGCTGTGTGGTGCGTCAGCGGCACGAACCTCGACG
GGGGCGGCGGCGTCGGCGCCGTCACCGGTATGGCCGCCAGCGTCGACGGC
GCCAGCGTAACCGTCGTCGGAACGGGGGACTCGGCGGGGTTTGTGGTGCG
GCTGTCGGCGTCGAACGGCACGGTGACGTGGCAGGTGGCGACGGCCGCCG
GCAGCGGCGTCGAGGCGGTGACGCTCGACGACGACGACGACGTCATCGTC
GTGGGCTTCACGAACGGCACAGACGGCGCCTCGAGCGTGCTGGCGCGGAA
ACTCTACGGATCCGACGGAGACACGGTTTGGACGCTCAGCAGCAACAGCA
CGGCCAACGGCACGAGCACCGCCGGCGCCGCCTACGGCGTGACCGCCGAT
GGCAACGACTCCGTCGTCGTTACCGGCGTCGACGACGACTCGGCGGCCTT
CGTCATGCTACTTTCCGCCGACAGCGGAGCCTCCTCCTGCCGCTACAGCT
TCGTGGCGACGGATGGCGGCGCCACGTCGGGCATGGCGGTCGCGGCGGAC
GGTGCCGGCGACGGCAGCGGCGTGACCGTCGCCGGCACGACGAACGGCTC
ATTGTTCGGCACGAGCAGCGGCGGCACCGATGCCTTTTCGGTGGGCTTTG
ATATGAGTTCGACGGACGTATGCGAGGACGGCAGCGACGCGACCTTGACC
GAAGAGGGCTTTATCAGCGGGTCGACGGGCGACACGGCTGCGACGACCGT
CTCCGTGGCAGTGGCTGTGGCGGGGGTGGCGGTCGTCGTGGCGGCGGCGG
CCGCCACCGGCTCCACTGCGGCGGCGGCGGCGGCGGCGGGCGGCGCCGGC
GCCGGCGGCGGCGGCGGAGCGGCGGCGGGCACCACGACAGCGACGACGAC
GACCGGCGGCGCGATCACAGCGGGTTCAACGACTCAGGTGTCACCGGCGG
CCAGCCTCGGCGGGGCGCTCGTGCTGCAACTGCAGTTCGCGGCGACGCTG
AGCCTCGTGGACTCGGAAAATCAGTCGACCAGCTTTTCCGGCTTCGCCGA
CTCGCTGGGGTGGACCAACCTGTGGGTGTCGGCAGACAATGTTCACAGAG
CCGGTGGATGCATCGCAGCTGAGTCCTCCGGCGTCGGCGGCGCCGTCTTC
CTCGGCAACACCGTGCTGGCGGTGGTCGGCCTGCTGGTCATCTTTGCGGT
GCACATGCTGGTCATTTCGGGGCTCGAGGCGTACTGGCTGGCGCACGACG
CCGCCACCTTCGTAGCCGAGGACGCCGAGCGGCAGGGCTTGACGGTCGCC
CAGATGCAGAGCATGCGGATCATGGCGCGCCAGGTGTCTATCAATGGGGT
CGAAGTCGTGGTGGACGGCGCTGTCGCCGACGCTGCGGCTGACCGCGCCG
ACGGCGATGGCAGTGACGGCTGTTCGGGCGTCTACGGCGGCCTCCTCGCC
GACGAGATCGCCGCCACCGCCGCCCGCGGCGCCCTTCATGGCGGCATCGG
CGCCGGTCCGTCCGATCGCGCCGGTCCCGCTGCCGCGGACTCGGAGGAGG
GTCCGGCCCCGGCCTTCGACGGTTCGCTCCACAGCCGATCGACGCTGGGC
GCAGGGGCGGAGGCCGTGGCGGCGGCTCTGAAGACGCCGCCGCCGCAGCG
GGCGCTGTACCGCTACGAGTCGCGGCTGGACCCATATGACCACGTTTTGC
GGAGGTCGCACTCGATCTGGCTGTACTGGCCGCACCTCGAGCTGCTCTAC
CTGCTGTTCATCTTCGACGGAGCGCTCACCGCACAGGCGTCCATGTTCCG
GAGCCAGTGCCTGATACTGCAAATCATTGCCGTGGTGCTCTTCGTTGTCT
TCCCCGTCAGCATTCTCGTCTTCGTCTGGATTGTCTGCAAGCGCCAGGTC
CGCTCCAGGGACGGCGCCGTTCAGTACGTCGCTTCCGCACCGACCAGCGA
AGGCGCCTTCCGCCGCCTCTTCCGGGGCTGGCGTGGCGCCGTCACGGAGG
GCTCCTCCGTCCTGGAGCCGTTCGCGCGCGGTCACTGGGAGCCGAACTCG
GCGGTGGATAACGCCGGACGTGACGGAGACGGGAACGGGAGCGGGAGTGG
AACTGTCCGGCGCGAGGCGGACGAGTTCCGGATCGGGTTTGAGCCGCTGT
ACGCCGAATACACAACGCGGGCCGTCTACTACGTTGTGTTCCGGCTGGTC
AAGTCGATGGCGCTCGGGCTGGTGGCGGCGTTGGTCTATGGTGCGCTGCT
GCAGACGGGGCTCATGTTTGGCATCCATGCTCTGGACTTCTTTGTGCTGC
TCTTTTTTTGGCCGTTCGACAACACAGCCATTGTCGTCGTCGAGCTCATG
CTGTGCTTCGTCGACGCAGCGAGCATGGCGGTGGTCTTCTTCACGAACCT
GCTCAAGGGAGGAGGCAAGGCTGCCGCCCAGGCGTGGGACTTTGTCCTGC
TCCTTCAACTGGTGGCGCTCGTCCTCATCGTAGTCCCACTCTACGTCGAC
ACGGGCCTCAGCATGCTTCACGTCGTCCGCAAGAAGTTCGCCAAGGCGGC
GCGCAGCGACAGCGGCGGCCGCTCGGCCAGCGGGTGGAGCGCGAGTGGAG
GCCGCCGGACCTCCAGCGGAGGAGGGCGGACGGCCAGCGCCATTACGGCG
GAGCAGCGGGCGGCGGAGAAGGCGGAGCGGGACAGCTGGGCGCAGAGGCG
TGCCAAGCACACGTGGACGCGCTACTGGTGGATGATGCTGCGCGTCAACC
TTGCGGCGTGTTTCAACAACGTCCGCAAGTCCATGCTGCGGCGCCGCTAC
CGGAGCATGGCGACCTTCCCGAAGACGCACCCCGCCATACCGCACGACGG
CGACTCGGACAGCGGGCGGGGCAGCGCCCGCGGTGGCGGCAGCAGCGGCT
CCGGCGGTTCAAATCAGCACAACCGGAGCGACCACAACGACCGGAGCGAT
CGGAGCAGCAGCGCCAGGACAACTTCGGCGAACGGCCTCTTCAACCGCCA
CACCATCTCCGAGTCGGAGATTCCGATGCGACATCCAGAGATTGGCGCCG
AGTAG
back to top