mRNA_P-wetherbeei_contig6692.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6692.1.1
Unique NamemRNA_P-wetherbeei_contig6692.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6692.1.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 394 bits (1011), Expect = 1.710e-121
Identity = 191/264 (72.35%), Postives = 223/264 (84.47%), Query Frame = 1
Query:    1 LRCLARAVAVSNAPILLQGPTSAGKTSLIEYLAVRCGHRCVRINNHEHTDVQEYTGCYMTDQAGKISFREGILVDALRRGHWLILDELNLAPSDVLEALNRLLDDNRELYLPETQETVRPHPLFRLFATQNPPGAAYGGRKPLSRAFRNRFLELHVGDLPGDEWADILHQRCGMAPSHCRLLVEVYASLQARRQRSGLFRGKHGFIGPRDLLRWAGRAPSDKRAIAVEGYMLLAERLRSEDERNEIRVVLEEHFGVAIDVANLY 792
            LRCLARAVA S++P+LLQGPTSAGKTS++EYLA R GHRCVRINNHEHTD+QEYTG Y  D  GK++F+EG+LV++LR+G+W+ILDELNLAPS+VLEALNRLLD NRELYL ETQET++PHP FRLFATQNPPGA YGGRKPLSRAFRNRF+E+HV D+PG EW  IL +RCG+ PSHC+LLV+V   LQA+RQ S LF GKHG I PRDLLRWAGR P  K+ +A EGYMLLAERLRS +E+  +R VLEE  GV +D   LY
Sbjct:  342 LRCLARAVASSDSPVLLQGPTSAGKTSIVEYLAARLGHRCVRINNHEHTDIQEYTGSYAADGNGKLAFQEGVLVESLRKGYWIILDELNLAPSEVLEALNRLLDHNRELYLSETQETIKPHPNFRLFATQNPPGA-YGGRKPLSRAFRNRFMEVHVDDIPGAEWEIILAERCGLPPSHCKLLVKVLHELQAQRQSSRLFLGKHGAISPRDLLRWAGRKPQGKQQLAEEGYMLLAERLRSAEEKAAMRAVLEEQIGVPLDPDCLY 604          
BLAST of mRNA_P-wetherbeei_contig6692.1.1 vs. uniprot
Match: B8C0J5_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0J5_THAPS)

HSP 1 Score: 363 bits (933), Expect = 3.010e-119
Identity = 182/264 (68.94%), Postives = 210/264 (79.55%), Query Frame = 1
Query:    1 LRCLARAVAVSNAPILLQGPTSAGKTSLIEYLAVRCGHRCVRINNHEHTDVQEYTGCYMTDQAGKISFREGILVDALRRGHWLILDELNLAPSDVLEALNRLLDDNRELYLPETQETVRPHPLFRLFATQNPPGAAYGGRKPLSRAFRNRFLELHVGDLPGDEWADILHQRCGMAPSHCRLLVEVYASLQARRQRSGLFRGKHGFIGPRDLLRWAGRAPSDKRAIAVEGYMLLAERLRSEDERNEIRVVLEEHFGVAIDVANLY 792
            LR L +AVA     ILL+GPTSAGKT+L+EYLA R GHRCVRINNHEHTD+QEYTG Y  D  GKISF+EGILV ALR+GHW+ILDELNLAPS+VLEALNRLLDDNRELYLPE  ETV+PH  FRLFATQNP GA YGGRKPLSRAFRNRF+E+H+ D+P DE   IL +RCG  PSH +LLV+V  SL+ RR R+G+FRGK G + PRDLLRWAGR  S K  +A EGYMLLAERLR E+E+N +R V+E    V I++   Y
Sbjct:   42 LRRLCQAVASGPWSILLEGPTSAGKTTLVEYLAARVGHRCVRINNHEHTDIQEYTGSYAADSKGKISFQEGILVQALRKGHWVILDELNLAPSEVLEALNRLLDDNRELYLPEINETVKPHKNFRLFATQNPAGA-YGGRKPLSRAFRNRFVEIHMADIPEDEMILILERRCGCPPSHAKLLVKVMKSLRQRRSRTGIFRGKDGLVTPRDLLRWAGRGASSKVDLAREGYMLLAERLRDEEEKNVVRSVIETELKVKIEMEETY 304          
BLAST of mRNA_P-wetherbeei_contig6692.1.1 vs. uniprot
Match: A0A7S4N8L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N8L4_9STRA)

HSP 1 Score: 374 bits (960), Expect = 8.610e-119
Identity = 190/267 (71.16%), Postives = 212/267 (79.40%), Query Frame = 1
Query:    1 LRCLARAVAVSNAPILLQGPTSAGKTSLIEYLAVRCGHRCVRINNHEHTDVQEYTGCYMTDQAGKISFREGILVDALRRGHWLILDELNLAPSDVLEALNRLLDDNRELYLPETQETVRPHPLFRLFATQNPPGAAYGGRKPLSRAFRNRFLELHVGDLPGDEWADILHQRCGMAPSHCRLLVEVYASLQARRQRSGLFRGKHGFIGPRDLLRWAGRAPSDKRAIAVEGYMLLAERLRSEDERNEIRVVLEEHF---GVAIDVANLY 792
            LR L RA +    PILL+GPTSAGKT+LIEYLA R GHRCVRINNHEHTDVQEYTGCY  D  G++ FR+GILV ALRRGHW+ILDELNLAPS+VLEALNRLLDDNRELYLPET ETVRPHP FRLFATQNP GA YGGRKPLSRAFRNRF+ELHVGD+P  E + IL  RCG  P+H +LLV+V  SL+ RR RSG+FRGK G I PRDLLRWAGR  S K  +A EG+MLLAERLR+E+ER  +R VL E     G   DV  +Y
Sbjct:  278 LRSLVRAASSGPWPILLEGPTSAGKTTLIEYLAARLGHRCVRINNHEHTDVQEYTGCYAADSEGRLKFRDGILVQALRRGHWVILDELNLAPSEVLEALNRLLDDNRELYLPETDETVRPHPDFRLFATQNPCGA-YGGRKPLSRAFRNRFVELHVGDIPPGEMSTILELRCGCPPTHAKLLVKVMVSLRNRRSRSGVFRGKDGLITPRDLLRWAGRGASTKSELAAEGFMLLAERLRNEEEREAVREVLGEVIKGAGAEFDVDEIY 543          
BLAST of mRNA_P-wetherbeei_contig6692.1.1 vs. uniprot
Match: A0A7S3VEM6_9STRA (Midasin n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VEM6_9STRA)

HSP 1 Score: 366 bits (940), Expect = 5.810e-112
Identity = 181/264 (68.56%), Postives = 211/264 (79.92%), Query Frame = 1
Query:    1 LRCLARAVAVSNAPILLQGPTSAGKTSLIEYLAVRCGHRCVRINNHEHTDVQEYTGCYMTDQAGKISFREGILVDALRRGHWLILDELNLAPSDVLEALNRLLDDNRELYLPETQETVRPHPLFRLFATQNPPGAAYGGRKPLSRAFRNRFLELHVGDLPGDEWADILHQRCGMAPSHCRLLVEVYASLQARRQRSGLFRGKHGFIGPRDLLRWAGRAPSDKRAIAVEGYMLLAERLRSEDERNEIRVVLEEHFGVAIDVANLY 792
            LR L RAVA    P+LL+GPTSAGKT+++E+LA RCGHRCVRINNHEHTDVQEYTG Y +D  GK+ FREGILV ALR+GHW+ILDELNLAPS+VLEALNRLLDDNRELYL E  E V+PHP FRLFATQNP GA YGGRKPLSRAFRNRF+E+HVGD+P  E   IL  RC   PSH +LLV+V +SL+ RR +SG+FRGK G I PRDLLRWA R    K  +A++G+MLLAERLR EDE+N ++ ++EEH  V ID   LY
Sbjct: 1211 LRRLTRAVASGPWPVLLEGPTSAGKTTMVEFLAARCGHRCVRINNHEHTDVQEYTGSYASDPNGKLCFREGILVQALRKGHWVILDELNLAPSEVLEALNRLLDDNRELYLAEINEVVKPHPNFRLFATQNPSGA-YGGRKPLSRAFRNRFVEMHVGDIPEQEMVTILELRCKCPPSHAKLLVKVMSSLRKRRSKSGVFRGKDGLITPRDLLRWAERKVVSKEELALQGWMLLAERLRDEDEKNLVKEIIEEHMKVHIDCNELY 1473          
BLAST of mRNA_P-wetherbeei_contig6692.1.1 vs. uniprot
Match: A0A4D9D334_9STRA (VWFA domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D334_9STRA)

HSP 1 Score: 362 bits (928), Expect = 2.380e-110
Identity = 186/266 (69.92%), Postives = 211/266 (79.32%), Query Frame = 1
Query:    1 LRCLARAVAVSN-APILLQGPTSAGKTSLIEYLAVRCGHRCVRINNHEHTDVQEYTGCYMTDQ-AGKISFREGILVDALRRGHWLILDELNLAPSDVLEALNRLLDDNRELYLPETQETVRPHPLFRLFATQNPPGAAYGGRKPLSRAFRNRFLELHVGDLPGDEWADILHQRCGMAPSHCRLLVEVYASLQARRQRSGLFRGKHGFIGPRDLLRWAGRAPSDKRAIAVEGYMLLAERLRSEDERNEIRVVLEEHFGVAIDVANLY 792
            LR LARAVA  + APILLQGPTSAGKT+L+EYLA R GH CVRINNHEHTDV EYTG Y  D   G + F++G+LV ALR G WLILDELNLAP +VLE LNRLLDDNREL +PETQE V PHP FRLFATQNPPG AYGGRKPLSRAFRNRFLEL +G +  +E   ILH+R GMAPSH RLLV+V A+LQ RR RSG+F G+ GF+ PRDLLRWA R PS ++AIA EGYMLL ERLR ++E+++IR VLE    V ID A LY
Sbjct: 1162 LRGLARAVAGGHGAPILLQGPTSAGKTTLVEYLAARTGHVCVRINNHEHTDVSEYTGAYAPDPITGHLRFQDGLLVKALREGAWLILDELNLAPPEVLEGLNRLLDDNRELLVPETQEIVVPHPAFRLFATQNPPGGAYGGRKPLSRAFRNRFLELDMGPIAAEEMEQILHERVGMAPSHARLLVKVMATLQGRRTRSGVFAGREGFVTPRDLLRWASRRPSTRQAIAEEGYMLLGERLRRKEEKDDIRSVLETTCNVTIDPATLY 1427          
BLAST of mRNA_P-wetherbeei_contig6692.1.1 vs. uniprot
Match: A0A448Z6E1_9STRA (Midasin n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z6E1_9STRA)

HSP 1 Score: 361 bits (926), Expect = 4.360e-110
Identity = 176/264 (66.67%), Postives = 211/264 (79.92%), Query Frame = 1
Query:    1 LRCLARAVAVSNAPILLQGPTSAGKTSLIEYLAVRCGHRCVRINNHEHTDVQEYTGCYMTDQAGKISFREGILVDALRRGHWLILDELNLAPSDVLEALNRLLDDNRELYLPETQETVRPHPLFRLFATQNPPGAAYGGRKPLSRAFRNRFLELHVGDLPGDEWADILHQRCGMAPSHCRLLVEVYASLQARRQRSGLFRGKHGFIGPRDLLRWAGRAPSDKRAIAVEGYMLLAERLRSEDERNEIRVVLEEHFGVAIDVANLY 792
            LR LA+A+A    P+LL+GPTS+GKT+L+EY+A RCGH  VRINNHEHTDVQEYTG +  D+ G +SFR+GILV ALR+GHW+ILDELNLAPS+VLEALNRLLDDNRELYL ET ETV+PHP FRLFATQNP GA YGGRKPLSRAFRNRF+ELHVGD+P DE + IL +RCG  PSH +LLVE+   L+ +R +S LF GK  FI PRDLLRWA R    K+ +A  GYM+LAERLRS++E+  +  VLEEH  + I++  LY
Sbjct:  340 LRRLAQALATGPWPVLLEGPTSSGKTTLVEYIAARCGHXVVRINNHEHTDVQEYTGAFAADRNGSLSFRDGILVQALRKGHWVILDELNLAPSEVLEALNRLLDDNRELYLAETNETVKPHPNFRLFATQNPSGA-YGGRKPLSRAFRNRFVELHVGDIPSDEMSQILEKRCGCPPSHAKLLVEIMVDLRVKRSKSNLFLGKDSFITPRDLLRWAERQSGSKKDLAEHGYMVLAERLRSDEEKQMVLNVLEEHTKIKINLERLY 602          
BLAST of mRNA_P-wetherbeei_contig6692.1.1 vs. uniprot
Match: K0TEP4_THAOC (Midasin n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TEP4_THAOC)

HSP 1 Score: 355 bits (910), Expect = 6.170e-108
Identity = 175/264 (66.29%), Postives = 209/264 (79.17%), Query Frame = 1
Query:    1 LRCLARAVAVSNAPILLQGPTSAGKTSLIEYLAVRCGHRCVRINNHEHTDVQEYTGCYMTDQAGKISFREGILVDALRRGHWLILDELNLAPSDVLEALNRLLDDNRELYLPETQETVRPHPLFRLFATQNPPGAAYGGRKPLSRAFRNRFLELHVGDLPGDEWADILHQRCGMAPSHCRLLVEVYASLQARRQRSGLFRGKHGFIGPRDLLRWAGRAPSDKRAIAVEGYMLLAERLRSEDERNEIRVVLEEHFGVAIDVANLY 792
            LR L +AVA     +LL+GPTSAGKT+L+EYLA RCGH+CVRINNHEHTD+QEYTG Y  D  GKISF+EGILV ALR+G+W+ILDELNLAPS+VLEALNRLLDDNRELYL E  E V+PH  FRLFATQNP GA YGGRKPLSRAFRNRF+E+H+ D+P DE   IL +RC   PSH +LLV+V  +L+ RR R+G+FRGK G I PRDLLRWAGR  + K  +A+EGY LLAERLR ++ER+ +R V+E+   V ID+   Y
Sbjct: 1306 LRRLCQAVASGPWSVLLEGPTSAGKTTLVEYLARRCGHKCVRINNHEHTDIQEYTGSYAADSKGKISFQEGILVQALRKGYWVILDELNLAPSEVLEALNRLLDDNRELYLAEINEVVKPHENFRLFATQNPAGA-YGGRKPLSRAFRNRFVEIHLSDIPEDEMVTILEKRCACPPSHAKLLVKVMKTLRQRRSRTGVFRGKDGLITPRDLLRWAGRGATSKAELALEGYFLLAERLRLDEERDAVRRVIEKELKVTIDLDETY 1568          
BLAST of mRNA_P-wetherbeei_contig6692.1.1 vs. uniprot
Match: A0A7R9Y096_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y096_MICPS)

HSP 1 Score: 332 bits (852), Expect = 3.240e-106
Identity = 166/268 (61.94%), Postives = 205/268 (76.49%), Query Frame = 1
Query:    1 LRCLARAVAVSNAPILLQGPTSAGKTSLIEYLAVRCGHRCVRINNHEHTDVQEYTGCYMTDQAGKISFREGILVDALRRGHWLILDELNLAPSDVLEALNRLLDDNRELYLPETQETVRPHPLFRLFATQNPPGAAYGGRKPLSRAFRNRFLELHVGDLPGDEWADILHQRCGMAPSHCRLLVEVYASLQARRQRSGLFRGKHGFIGPRDLLRWAGRAPSDKRAIAVEGYMLLAERLRSEDERNEIRVVLEEHFGV-AIDVANLYAAA 801
            L  LARA  +   PILLQGPTS+GKTSL++YLA R GHR +RINNHEHTD+QEY G Y+TD+ G+++F+EG LV A+RRG+W++LDELNLAPSDVLEALNRLLDDNREL++PE QET+ PHP F LFATQNPPGA YGGRK LS+AFRNRF+E+HVGD+P DE   IL++RC +APS+C  LVEV   LQ RRQ S  F GK GFI  RDL RWA R  +    +A +G+ +L ERLRS++ER  ++  L +   V  I  + LYA+A
Sbjct:  307 LSSLARAALLRRHPILLQGPTSSGKTSLVQYLAERTGHRFMRINNHEHTDLQEYLGSYVTDENGQLAFQEGALVQAVRRGYWIVLDELNLAPSDVLEALNRLLDDNRELFVPELQETITPHPHFMLFATQNPPGATYGGRKVLSKAFRNRFMEIHVGDIPDDELRIILNKRCEIAPSYCTKLVEVMRELQRRRQASRAFAGKDGFITARDLFRWANRKSNGYEELARDGFRVLGERLRSDEEREALKATLAKVLKVPVITESTLYASA 574          
BLAST of mRNA_P-wetherbeei_contig6692.1.1 vs. uniprot
Match: A0A835Z947_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z947_9STRA)

HSP 1 Score: 348 bits (892), Expect = 1.390e-105
Identity = 181/263 (68.82%), Postives = 200/263 (76.05%), Query Frame = 1
Query:    1 LRCLARAVAVSNAPILLQGPTSAGKTSLIEYLAVRCGHRCVRINNHEHTDVQEYTGCYMTDQAGKISFREGILVDALRRGHWLILDELNLAPSDVLEALNRLLDDNRELYLPETQETVRPHPLFRLFATQNPPGAAYGGRKPLSRAFRNRFLELHVGDLPGDEWADILHQRCGMAPSHCRLLVEVYASLQARRQRSGLFRGKHGFIGPRDLLRWAGRAPSDKRAIAVEGYMLLAERLRSEDERNEIRVVLEEHFGVAIDVANL 789
            LR LARAVAVS AP+LLQGPTSAGKT+L+EYLA RCGHRCVRINNHEHTD+QEYTG Y  D++GK+ F E                        VLEALNRLLDDNREL +PETQ+ VR H  FRLFATQNPPGA YGGRKPLSRAFRNRFLELHV DLP  EW  IL QRCGMAPSH  LLV V  +L+ RRQRSGLF GKHGFI PRDLLRWAGR P   +AIA EGYMLLAERLRSEDE+ E++ VLE+  GV ID+ ++
Sbjct:  770 LRDLARAVAVSKAPVLLQGPTSAGKTTLVEYLAARCGHRCVRINNHEHTDIQEYTGTYTADESGKLVFVE------------------------VLEALNRLLDDNRELLIPETQDAVRAHARFRLFATQNPPGA-YGGRKPLSRAFRNRFLELHVEDLPEAEWEAILAQRCGMAPSHAALLVRVLGALRRRRQRSGLFSGKHGFISPRDLLRWAGRGPQGVQAIADEGYMLLAERLRSEDEKAELQEVLEQELGVTIDLRDV 1007          
BLAST of mRNA_P-wetherbeei_contig6692.1.1 vs. uniprot
Match: A0A058ZBI7_FONAL (Midasin n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZBI7_FONAL)

HSP 1 Score: 344 bits (882), Expect = 3.530e-104
Identity = 170/268 (63.43%), Postives = 203/268 (75.75%), Query Frame = 1
Query:    1 LRCLARAVAVSNAPILLQGPTSAGKTSLIEYLAVRCGHRCVRINNHEHTDVQEYTGCYMTDQAGKISFREGILVDALRRGHWLILDELNLAPSDVLEALNRLLDDNRELYLPETQETVRPHPLFRLFATQNPPGAAYGGRKPLSRAFRNRFLELHVGDLPGDEWADILHQRCGMAPSHCRLLVEVYASLQARRQRSGLFRGKHGFIGPRDLLRWAGR----APSDKRAIAVEGYMLLAERLRSEDERNEIRVVLEEHFGVAIDVANLY 792
            LR LAR V  +  P+L+QGPTSAGKTS++EYLA R GHR VRINNHEHTD+QEY G Y+ D  G+++FREG+LV+ALR GHW++LDELNLAP+DVLEALNRLLDDNRELYLPETQETVRPHP F LFATQNPP   YGGRK LSRAFRNRFLE+H  D+P  E  +I+  RC M PS    LV VY  LQ RRQ + +F G+ G+I  RDL RW GR      +D R +A +GYMLLAER+RS +ER  +R V+E+H    +D+A LY
Sbjct:  195 LRSLARVVVANTYPVLIQGPTSAGKTSMVEYLAARTGHRFVRINNHEHTDLQEYLGSYVADDQGRLAFREGVLVEALRHGHWIVLDELNLAPTDVLEALNRLLDDNRELYLPETQETVRPHPDFMLFATQNPP-RLYGGRKVLSRAFRNRFLEIHFDDIPVGELQEIVENRCAMPPSRAERLVAVYRDLQERRQATNVFAGRDGYITLRDLFRWGGRFAQYTGTDDRRLAEDGYMLLAERVRSVEERETVRAVVEKHVRAPVDLATLY 461          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6692.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL28_ECTSI1.710e-12172.35Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
B8C0J5_THAPS3.010e-11968.94Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4N8L4_9STRA8.610e-11971.16Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S3VEM6_9STRA5.810e-11268.56Midasin n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
A0A4D9D334_9STRA2.380e-11069.92VWFA domain-containing protein n=1 Tax=Nannochloro... [more]
A0A448Z6E1_9STRA4.360e-11066.67Midasin n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]
K0TEP4_THAOC6.170e-10866.29Midasin n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
A0A7R9Y096_MICPS3.240e-10661.94Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A835Z947_9STRA1.390e-10568.82P-loop containing nucleoside triphosphate hydrolas... [more]
A0A058ZBI7_FONAL3.530e-10463.43Midasin n=1 Tax=Fonticula alba TaxID=691883 RepID=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6692contigP-wetherbeei_contig6692:1..2251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FL28
PFAMsAAA_5
Model size924
Max annot lvl2759|Eukaryota
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categorymitochondrion
Exons5
Evalue2.8e-122
EggNOG OGsCOG5271@1|root,KOG1808@2759|Eukaryota
DescriptionNuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
Cds size924
COG categoryM
BRITEko00000,ko00001,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186930.2139072-CDS-P-wetherbeei_contig6692:0..651683186930.2139072-CDS-P-wetherbeei_contig6692:0..65Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6692 1..65 +
1683186930.2274892-CDS-P-wetherbeei_contig6692:271..4161683186930.2274892-CDS-P-wetherbeei_contig6692:271..416Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6692 272..416 +
1683186930.2403255-CDS-P-wetherbeei_contig6692:887..11891683186930.2403255-CDS-P-wetherbeei_contig6692:887..1189Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6692 888..1189 +
1683186930.2497907-CDS-P-wetherbeei_contig6692:1330..15041683186930.2497907-CDS-P-wetherbeei_contig6692:1330..1504Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6692 1331..1504 +
1683186930.265967-CDS-P-wetherbeei_contig6692:2013..22511683186930.265967-CDS-P-wetherbeei_contig6692:2013..2251Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6692 2014..2251 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6692.1.1prot_P-wetherbeei_contig6692.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6692 1..2251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6692.1.1

>prot_P-wetherbeei_contig6692.1.1 ID=prot_P-wetherbeei_contig6692.1.1|Name=mRNA_P-wetherbeei_contig6692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=308bp
LRCLARAVAVSNAPILLQGPTSAGKTSLIEYLAVRCGHRCVRINNHEHTD
VQEYTGCYMTDQAGKISFREGILVDALRRGHWLILDELNLAPSDVLEALN
RLLDDNRELYLPETQETVRPHPLFRLFATQNPPGAAYGGRKPLSRAFRNR
FLELHVGDLPGDEWADILHQRCGMAPSHCRLLVEVYASLQARRQRSGLFR
GKHGFIGPRDLLRWAGRAPSDKRAIAVEGYMLLAERLRSEDERNEIRVVL
EEHFGVAIDVANLYAAARDGDGGSAGANAAGKAFGMAGGKGSGNRAAASA
SDGGEGEQ
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mRNA from alignment at P-wetherbeei_contig6692:1..2251+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6692.1.1 ID=mRNA_P-wetherbeei_contig6692.1.1|Name=mRNA_P-wetherbeei_contig6692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2251bp|location=Sequence derived from alignment at P-wetherbeei_contig6692:1..2251+ (Phaeothamnion wetherbeei SAG_119_79)
TTGAGGTGCTTGGCGCGGGCCGTGGCGGTGAGCAACGCGCCCATCCTGCT GCAAGGGCCGACGAGGTAAGCCAAAATGCCCCATTCTTAGACATCAGCTG TTAGTACAGTAGATTGAAAGGACGTTGGAGACTTGCTGTAGCCTTATTCC GGAGTGACGATGTAAGTTTAATGTAGCACCGTTTGCGGTGTTGCTGCGCA AATCTTCTGAAAGCAGCTTTTCATGCCCCTTTCTTCTCCTTCTTCCTGTT TCTGTCTTTTCCCGCTGGCAGTGCGGGCAAGACGAGCCTGATAGAGTATC TGGCGGTGCGGTGCGGCCACCGCTGCGTGCGCATCAACAACCACGAGCAC ACGGACGTCCAGGAGTACACGGGCTGCTACATGACCGACCAGGCCGGCAA GATATCTTTCCGGGAGGTGCGCCTCGCAGCGTCTCTCGTTCAACTTGTCT TTTTTTTGGTAGAGGCATTACAGGGCCGCGACCATTTGGGCCTGTTTGCG ACTTTCTATTCTGGTGAGATTAGTTCGTGGACCATGAGATGAGGAAAAAA AATCCTATCACAGACCTGTTCTGTAACGGCTTCCCGCAGCAATGCGTAGC CAACCTTGAAGAAGCAAACATGCACCACTATCTGATCACGGACATGAACA TTCTTCTTTCGTTTTCGTGCGGCGTTTCGTGTGAAGCGACTATGTTTTCT GTTCCTGAGGCACTTGACACGGCACGTTTTCGTTGCGCTTTTCGCGAGGA CCTGGTTTTGGGAAGACGGATCGGAGCGACCCGCAAACTTACGAGTTATC TTCCTCTATGCTGCGACCGCCTCTTGACTGCTGTCGCTGACATTGTTGCG TTCTCCTCCTGCTGCACCCTTGACCCGTTCGTCGTAGGGCATCCTGGTGG ACGCGCTGCGGCGGGGTCACTGGCTGATCCTGGACGAGCTCAATCTCGCG CCGTCCGACGTTTTGGAGGCGCTGAACAGGCTCCTCGACGACAACCGCGA GCTCTACCTGCCCGAGACGCAGGAGACGGTCCGCCCGCATCCGCTCTTCC GCCTTTTCGCCACGCAGAACCCGCCGGGCGCCGCTTACGGCGGGCGCAAG CCGCTATCGCGGGCGTTTCGGAACCGGTTCTTGGAGCTGCATGTCGGGGA CCTTCCAGGGGACGAGTGGGCCGACATTCTGCACCAGAGGTAAAGGAAAA GGAGAGAGGAGGACGGTTCTGATAGCAATAGGATGAGGGGCCACGCGTCT TGTCTGCTTACTCTCTTGTGTCTCCAACCGTCTGCCGTTTGCCGCCTGTT CGCATCGAAATATTCAAACACCCGATGCAGGTGCGGCATGGCGCCGAGCC ACTGCCGGCTGCTGGTGGAGGTGTACGCGTCGCTGCAGGCCCGCCGCCAG CGCTCGGGGCTTTTCCGCGGCAAGCACGGCTTCATCGGTCCGCGTGACCT GCTGCGGTGGGCCGGGAGGGCGCCCTCGGACAAGCGGGCCATCGCCGTCG AGGGGTGAGTCTCTTTTCGATACAGGTCGTTTAAAACATTTTTGTCTTTG CTTTTCTTTGCTTTTGTGCGGGTTGGCGTGTGTTTGACTTTCTCGCTGAT TTGAAAAGTGATAGGGGTAAGCTTTTCTCTTCGTCTTGTTGAGCGCTGGC CCAGCTAACCGCCCGATTTGGCCTTACTGGGTCTGTGTCGGGTGGTCCGT TCAATGTCAGCAAGAGCAAACAAGATCACTTCCGTCCTTAAGGCATCCCC TGGCTCGTCGCCGCCAAAATGGTGACGGCATTTGCCGGTCGAGGGTTTAC GTGAGGGTGATTACAGTCATTTCGGATTATGCTTATCCCAACTTTCTTTA AAATTTTCAAGCGAGTTCGGTGCGCTGTCGCCTCTTTCAGCTGGGCATGA TCTCTTTCCGCTGCATCCTGTTACAAAGTCACTCTTTAACCTCTTCTTTT GTTCGCTCCCCGTGTTTTTTTAATTTTGAAAGTGGTTCTGTTGTATCCTC CTCTGCATATCAGATATATGCTGCTGGCCGAGCGGCTGCGTTCGGAGGAC GAGCGGAACGAGATCCGCGTCGTCCTCGAGGAGCACTTCGGCGTCGCCAT CGACGTGGCCAACCTTTACGCTGCCGCACGCGACGGCGACGGCGGCAGCG CTGGCGCTAATGCTGCCGGCAAGGCTTTTGGGATGGCCGGCGGGAAGGGG AGCGGAAACCGTGCTGCAGCATCTGCAAGCGACGGCGGCGAGGGCGAGCA G
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6692:1..2251+

>mRNA_P-wetherbeei_contig6692.1.1 ID=mRNA_P-wetherbeei_contig6692.1.1|Name=mRNA_P-wetherbeei_contig6692.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=924bp|location=Sequence derived from alignment at P-wetherbeei_contig6692:1..2251+ (Phaeothamnion wetherbeei SAG_119_79)
TTGAGGTGCTTGGCGCGGGCCGTGGCGGTGAGCAACGCGCCCATCCTGCT
GCAAGGGCCGACGAGTGCGGGCAAGACGAGCCTGATAGAGTATCTGGCGG
TGCGGTGCGGCCACCGCTGCGTGCGCATCAACAACCACGAGCACACGGAC
GTCCAGGAGTACACGGGCTGCTACATGACCGACCAGGCCGGCAAGATATC
TTTCCGGGAGGGCATCCTGGTGGACGCGCTGCGGCGGGGTCACTGGCTGA
TCCTGGACGAGCTCAATCTCGCGCCGTCCGACGTTTTGGAGGCGCTGAAC
AGGCTCCTCGACGACAACCGCGAGCTCTACCTGCCCGAGACGCAGGAGAC
GGTCCGCCCGCATCCGCTCTTCCGCCTTTTCGCCACGCAGAACCCGCCGG
GCGCCGCTTACGGCGGGCGCAAGCCGCTATCGCGGGCGTTTCGGAACCGG
TTCTTGGAGCTGCATGTCGGGGACCTTCCAGGGGACGAGTGGGCCGACAT
TCTGCACCAGAGGTGCGGCATGGCGCCGAGCCACTGCCGGCTGCTGGTGG
AGGTGTACGCGTCGCTGCAGGCCCGCCGCCAGCGCTCGGGGCTTTTCCGC
GGCAAGCACGGCTTCATCGGTCCGCGTGACCTGCTGCGGTGGGCCGGGAG
GGCGCCCTCGGACAAGCGGGCCATCGCCGTCGAGGGATATATGCTGCTGG
CCGAGCGGCTGCGTTCGGAGGACGAGCGGAACGAGATCCGCGTCGTCCTC
GAGGAGCACTTCGGCGTCGCCATCGACGTGGCCAACCTTTACGCTGCCGC
ACGCGACGGCGACGGCGGCAGCGCTGGCGCTAATGCTGCCGGCAAGGCTT
TTGGGATGGCCGGCGGGAAGGGGAGCGGAAACCGTGCTGCAGCATCTGCA
AGCGACGGCGGCGAGGGCGAGCAG
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