mRNA_P-wetherbeei_contig6630.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6630.1.1
Unique NamemRNA_P-wetherbeei_contig6630.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6630.1.1 vs. uniprot
Match: A0A836CLN7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLN7_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.290e-8
Identity = 29/61 (47.54%), Postives = 36/61 (59.02%), Query Frame = 1 
Query:    1 VRCGWPYHGDELLRLVRALFDWRAAGTDAGERREVTLVSGGRRHQLDTILRDAVTGGVIRQ 183
             R  W + GDELLRL+RAL  WRAAG        V LV GG    L+T++R+A TG  + Q
Sbjct: 1161 ARWRWAFRGDELLRLLRALLAWRAAGDGGXXXXXVVLVGGGEAAPLETVVRNADTGAELAQ 1221
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6630.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CLN7_9STRA1.290e-847.54Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6630contigP-wetherbeei_contig6630:173..358 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G3B9
Model size186
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.09e-12
EggNOG OGs28PVI@1|root,2QWI5@2759|Eukaryota
Cds size186
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186926.6186628-CDS-P-wetherbeei_contig6630:172..3581683186926.6186628-CDS-P-wetherbeei_contig6630:172..358Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6630 173..358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6630.1.1prot_P-wetherbeei_contig6630.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6630 173..358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6630.1.1

>prot_P-wetherbeei_contig6630.1.1 ID=prot_P-wetherbeei_contig6630.1.1|Name=mRNA_P-wetherbeei_contig6630.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=62bp
VRCGWPYHGDELLRLVRALFDWRAAGTDAGERREVTLVSGGRRHQLDTIL
RDAVTGGVIRQL
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mRNA from alignment at P-wetherbeei_contig6630:173..358+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6630.1.1 ID=mRNA_P-wetherbeei_contig6630.1.1|Name=mRNA_P-wetherbeei_contig6630.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig6630:173..358+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGGTGCGGCTGGCCCTACCACGGGGACGAGCTGCTGCGGCTGGTGCG
GGCGCTGTTCGACTGGCGCGCCGCCGGCACCGACGCCGGCGAGCGGCGGG
AGGTGACGCTCGTCAGTGGCGGACGGCGGCACCAACTCGACACCATCCTG
CGGGACGCCGTCACGGGCGGGGTCATCCGCCAGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6630:173..358+

>mRNA_P-wetherbeei_contig6630.1.1 ID=mRNA_P-wetherbeei_contig6630.1.1|Name=mRNA_P-wetherbeei_contig6630.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=186bp|location=Sequence derived from alignment at P-wetherbeei_contig6630:173..358+ (Phaeothamnion wetherbeei SAG_119_79)
GTGCGGTGCGGCTGGCCCTACCACGGGGACGAGCTGCTGCGGCTGGTGCG
GGCGCTGTTCGACTGGCGCGCCGCCGGCACCGACGCCGGCGAGCGGCGGG
AGGTGACGCTCGTCAGTGGCGGACGGCGGCACCAACTCGACACCATCCTG
CGGGACGCCGTCACGGGCGGGGTCATCCGCCAGCTG
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