mRNA_P-wetherbeei_contig660.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig660.3.1
Unique NamemRNA_P-wetherbeei_contig660.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig660.3.1 vs. uniprot
Match: A0A836CNI7_9STRA (Zeta-carotene desaturase, chloroplastic/chromoplastic n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNI7_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.440e-8
Identity = 30/39 (76.92%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    1 DYIDSMEGATKSALLCADRILEDTPRLA--REKAARSKA 111
            DYIDSMEGATKSALLCAD +LEDTP+LA  R++ AR KA
Sbjct:  561 DYIDSMEGATKSALLCADVVLEDTPKLAALRDEMAREKA 599
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BLAST of mRNA_P-wetherbeei_contig660.3.1 vs. uniprot
Match: D8LJ40_ECTSI (Zeta-carotene desaturase, chloroplastic/chromoplastic n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ40_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.330e-8
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 DYIDSMEGATKSALLCADRILEDTPRLAREKAARSKAA 114
            DYIDSMEGATKSALLCADR+LEDTP LA  KAA+ + A
Sbjct:  562 DYIDSMEGATKSALLCADRVLEDTPALA--KAAKERKA 597
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BLAST of mRNA_P-wetherbeei_contig660.3.1 vs. uniprot
Match: A0A6H5JB95_9PHAE (Amino_oxidase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB95_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 3.330e-8
Identity = 30/38 (78.95%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:    1 DYIDSMEGATKSALLCADRILEDTPRLAREKAARSKAA 114
            DYIDSMEGATKSALLCADR+LEDTP LA  KAA+ + A
Sbjct:  580 DYIDSMEGATKSALLCADRVLEDTPALA--KAAKERKA 615
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BLAST of mRNA_P-wetherbeei_contig660.3.1 vs. uniprot
Match: A0A4D6NXF4_UNDPI (Zeta-carotene desaturase, chloroplastic/chromoplastic n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A4D6NXF4_UNDPI)

HSP 1 Score: 56.6 bits (135), Expect = 4.550e-8
Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 1 
Query:    1 DYIDSMEGATKSALLCADRILEDTPRLAR 87
            DYIDSMEGATKSALLCADR+LEDTP LA+
Sbjct:  566 DYIDSMEGATKSALLCADRVLEDTPALAK 594
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BLAST of mRNA_P-wetherbeei_contig660.3.1 vs. uniprot
Match: A0A0K6SAL9_9ALVE (Zeta-carotene desaturase, chloroplastic/chromoplastic n=3 Tax=Chromera velia TaxID=505693 RepID=A0A0K6SAL9_9ALVE)

HSP 1 Score: 47.4 bits (111), Expect = 8.410e-5
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    1 DYIDSMEGATKSALLCADRILEDTPRLAREK 93
            DYIDSMEGATKS L  AD ILEDTP L+R +
Sbjct:  545 DYIDSMEGATKSGLQAADAILEDTPLLSRTR 575
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig660.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CNI7_9STRA2.440e-876.92Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
D8LJ40_ECTSI3.330e-878.95Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
A0A6H5JB95_9PHAE3.330e-878.95Amino_oxidase domain-containing protein n=1 Tax=Ec... [more]
A0A4D6NXF4_UNDPI4.550e-889.66Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
A0A0K6SAL9_9ALVE8.410e-574.19Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig660contigP-wetherbeei_contig660:2629..2772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJ40
Preferred nameZDS
PFAMsAmino_oxidase
Model size144
Max annot lvl2759|Eukaryota
KEGG rclassRC01214,RC01959
KEGG koko:K00514
KEGG ReactionR04798,R04800,R07511,R09656,R09658
KEGG Pathwayko00906,ko01100,ko01110,map00906,map01100,map01110
KEGG ModuleM00097
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006629,GO:0006720,GO:0006721,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009058,GO:0009507,GO:0009509,GO:0009526,GO:0009536,GO:0009941,GO:0009987,GO:0016108,GO:0016109,GO:0016114,GO:0016116,GO:0016117,GO:0016119,GO:0016120,GO:0016491,GO:0016627,GO:0016635,GO:0031967,GO:0031975,GO:0042214,GO:0042440,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046148,GO:0046246,GO:0052886,GO:0052889,GO:0055114,GO:0071704,GO:1901175,GO:1901177,GO:1901576
Exons1
Evalue5.29e-05
EggNOG OGsCOG1231@1|root,KOG0029@2759|Eukaryota
EC1.3.5.6
Descriptionoxidoreductase activity
Cds size129
COG categoryE
BiGG ReactioniRC1080.CRv4_Au5_s7_g13718_t1
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.7102478-CDS-P-wetherbeei_contig660:2628..27571683186924.7102478-CDS-P-wetherbeei_contig660:2628..2757Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig660 2629..2757 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186924.7328959-UTR-P-wetherbeei_contig660:2757..27721683186924.7328959-UTR-P-wetherbeei_contig660:2757..2772Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig660 2758..2772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig660.3.1prot_P-wetherbeei_contig660.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig660 2629..2757 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig660.3.1

>prot_P-wetherbeei_contig660.3.1 ID=prot_P-wetherbeei_contig660.3.1|Name=mRNA_P-wetherbeei_contig660.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=43bp
MEGATKSALLCADRILEDTPRLAREKAARSKAAPQPAAAAVA*
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mRNA from alignment at P-wetherbeei_contig660:2629..2772-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig660.3.1 ID=mRNA_P-wetherbeei_contig660.3.1|Name=mRNA_P-wetherbeei_contig660.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig660:2629..2772- (Phaeothamnion wetherbeei SAG_119_79)
GACTACATTGACTCGATGGAAGGCGCCACCAAGTCGGCGCTGCTGTGCGC
CGACCGCATCCTCGAGGACACCCCGAGGCTGGCGCGGGAGAAGGCCGCAC
GAAGCAAGGCGGCGCCCCAGCCGGCGGCGGCGGCGGTGGCGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig660:2629..2772-

>mRNA_P-wetherbeei_contig660.3.1 ID=mRNA_P-wetherbeei_contig660.3.1|Name=mRNA_P-wetherbeei_contig660.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig660:2629..2772- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGGCGCCACCAAGTCGGCGCTGCTGTGCGCCGACCGCATCCTCGA
GGACACCCCGAGGCTGGCGCGGGAGAAGGCCGCACGAAGCAAGGCGGCGC
CCCAGCCGGCGGCGGCGGCGGTGGCGTGA
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