mRNA_P-wetherbeei_contig6588.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6588.1.1
Unique NamemRNA_P-wetherbeei_contig6588.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6588.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6588contigP-wetherbeei_contig6588:888..1863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size976
Hectar predicted targeting categorysignal peptide
Exons1
Cds size858
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.6858099-UTR-P-wetherbeei_contig6588:887..8921683186923.6858099-UTR-P-wetherbeei_contig6588:887..892Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6588 888..892 +
1683186923.7144084-UTR-P-wetherbeei_contig6588:1750..18631683186923.7144084-UTR-P-wetherbeei_contig6588:1750..1863Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6588 1751..1863 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186923.6983197-CDS-P-wetherbeei_contig6588:892..17501683186923.6983197-CDS-P-wetherbeei_contig6588:892..1750Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6588 893..1750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6588.1.1prot_P-wetherbeei_contig6588.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6588 893..1750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6588.1.1

>prot_P-wetherbeei_contig6588.1.1 ID=prot_P-wetherbeei_contig6588.1.1|Name=mRNA_P-wetherbeei_contig6588.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=286bp
MDMAKRWVLSWAAGCTGGVVLFLALCLRHRHAKLEVIFLRSLLQASRFLL
GVGLALTAPLWYVAGSGITPVATPLLAYGNPKNGSFEHGYGRPIAQMLLL
GAALRLEMHAALRWLACLGLAGILTIDAISNYGVDDQLACVEAGRCSLQS
GTSIGGLRLLSFRDLAAMATAACALVPVSFLLLALGPRANRIAPARFETG
PYNRLNAMRLELRKLGAWSGRKPAQRREDSFDATAGARGGIRRSGIGSGA
NGGRGSDSSSDGIGGGAGGSGTGRRNSGSGSYGKQ*
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mRNA from alignment at P-wetherbeei_contig6588:888..1863+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6588.1.1 ID=mRNA_P-wetherbeei_contig6588.1.1|Name=mRNA_P-wetherbeei_contig6588.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=976bp|location=Sequence derived from alignment at P-wetherbeei_contig6588:888..1863+ (Phaeothamnion wetherbeei SAG_119_79)
CAGTTATGGACATGGCGAAGCGATGGGTGCTGTCGTGGGCAGCAGGGTGC
ACGGGCGGTGTCGTCCTGTTTCTCGCGCTCTGCCTGCGCCACCGCCATGC
CAAGCTGGAAGTCATCTTCCTTCGATCTCTCCTGCAGGCGAGCCGTTTCC
TGCTGGGTGTCGGCCTCGCGTTGACCGCACCGCTATGGTACGTTGCCGGA
TCGGGTATTACACCAGTGGCGACGCCGCTGCTGGCTTACGGCAACCCGAA
GAATGGATCTTTCGAACACGGCTACGGGCGGCCAATCGCCCAGATGCTCC
TGCTGGGAGCCGCCCTCCGTTTGGAGATGCATGCTGCGCTCCGATGGCTT
GCATGCCTCGGGCTGGCGGGAATACTGACGATCGATGCCATTTCCAATTA
CGGCGTCGACGATCAGCTCGCGTGCGTCGAGGCCGGCCGCTGCTCGCTGC
AAAGCGGCACTAGCATCGGCGGCCTCCGCTTGCTCTCGTTTAGGGATCTC
GCGGCCATGGCCACGGCCGCTTGCGCGCTGGTGCCCGTATCTTTCCTGCT
GCTGGCGCTGGGCCCCCGTGCGAATCGTATCGCGCCGGCGCGCTTCGAGA
CGGGGCCCTACAACCGCCTCAACGCCATGCGGCTGGAGCTGCGCAAGTTG
GGAGCGTGGAGCGGTCGGAAGCCGGCGCAACGGCGGGAGGACTCCTTCGA
TGCGACTGCGGGGGCCCGGGGTGGAATAAGGAGGAGCGGCATCGGTAGCG
GTGCCAACGGCGGCAGAGGCAGCGACAGCAGCAGCGATGGGATCGGCGGC
GGAGCTGGAGGAAGCGGGACGGGAAGGAGGAACAGCGGCAGCGGCTCTTA
TGGAAAGCAGTAGACACAAGACTGACCGCCGTGTGTCGGTGTCCAAATAC
AGACGGCCGCGCTAACCACAAGAGGAATTCAAGGCACCCGGATGATAAGA
CTTTGATAAATAGACTCTACAATCGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6588:888..1863+

>mRNA_P-wetherbeei_contig6588.1.1 ID=mRNA_P-wetherbeei_contig6588.1.1|Name=mRNA_P-wetherbeei_contig6588.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=858bp|location=Sequence derived from alignment at P-wetherbeei_contig6588:888..1863+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACATGGCGAAGCGATGGGTGCTGTCGTGGGCAGCAGGGTGCACGGG
CGGTGTCGTCCTGTTTCTCGCGCTCTGCCTGCGCCACCGCCATGCCAAGC
TGGAAGTCATCTTCCTTCGATCTCTCCTGCAGGCGAGCCGTTTCCTGCTG
GGTGTCGGCCTCGCGTTGACCGCACCGCTATGGTACGTTGCCGGATCGGG
TATTACACCAGTGGCGACGCCGCTGCTGGCTTACGGCAACCCGAAGAATG
GATCTTTCGAACACGGCTACGGGCGGCCAATCGCCCAGATGCTCCTGCTG
GGAGCCGCCCTCCGTTTGGAGATGCATGCTGCGCTCCGATGGCTTGCATG
CCTCGGGCTGGCGGGAATACTGACGATCGATGCCATTTCCAATTACGGCG
TCGACGATCAGCTCGCGTGCGTCGAGGCCGGCCGCTGCTCGCTGCAAAGC
GGCACTAGCATCGGCGGCCTCCGCTTGCTCTCGTTTAGGGATCTCGCGGC
CATGGCCACGGCCGCTTGCGCGCTGGTGCCCGTATCTTTCCTGCTGCTGG
CGCTGGGCCCCCGTGCGAATCGTATCGCGCCGGCGCGCTTCGAGACGGGG
CCCTACAACCGCCTCAACGCCATGCGGCTGGAGCTGCGCAAGTTGGGAGC
GTGGAGCGGTCGGAAGCCGGCGCAACGGCGGGAGGACTCCTTCGATGCGA
CTGCGGGGGCCCGGGGTGGAATAAGGAGGAGCGGCATCGGTAGCGGTGCC
AACGGCGGCAGAGGCAGCGACAGCAGCAGCGATGGGATCGGCGGCGGAGC
TGGAGGAAGCGGGACGGGAAGGAGGAACAGCGGCAGCGGCTCTTATGGAA
AGCAGTAG
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