mRNA_P-wetherbeei_contig6496.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A7S2SC35_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SC35_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 2.000e-13 Identity = 54/155 (34.84%), Postives = 61/155 (39.35%), Query Frame = 3
Query: 423 GRVT*PVAKKTMATTVP-LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLK-TRQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK*P 881
G V P TM++ V +KTT D RFP NQA HCWN YN+WV+ LK GDE D+ K RQ A SLCP EWV KWDEEREEG F G+K P
Sbjct: 8 GPVASPSPPATMSSIVNFMKTTQADKRFPNQNQANHCWNRYNEWVMCLKGTQGDE---DACKGVRQLAVSLCPCEWVE------------------------------------------------------------KWDEEREEGAFAGIKFP 99
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: F0XWE0_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWE0_AURAN) HSP 1 Score: 75.1 bits (183), Expect = 2.550e-13 Identity = 38/65 (58.46%), Postives = 43/65 (66.15%), Query Frame = 3
Query: 474 LKTTPPDSRFPTTNQAAHCWNL-------YNQWVLALKKADGDESNPDSLKT-RQAAASLCPIEW 644
+KTTPPD RFPT NQA HCWN YN+WVL LKK DGDE D+ K RQ A S+CP +W
Sbjct: 1 IKTTPPDKRFPTQNQANHCWNRAAAASDRYNEWVLCLKKTDGDE---DACKPMRQFALSICPDDW 62
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A7S0GB85_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GB85_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 4.640e-13 Identity = 45/140 (32.14%), Postives = 55/140 (39.29%), Query Frame = 3
Query: 456 MATTVPLKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKTRQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
M T + +KTTP FP+ NQAAHCWN YN+WV+ +K +GD +RQ A S+CP EW KWDEEREEGTFPG+K
Sbjct: 43 MITNMKVKTTPRQHNFPSQNQAAHCWNRYNEWVVCMKTTEGDRGK--CAGSRQLAGSICPDEWQE------------------------------------------------------------KWDEEREEGTFPGMK 120
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: D8LG10_ECTSI (Cytochrome c oxidase subunit 6b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG10_ECTSI) HSP 1 Score: 73.9 bits (180), Expect = 7.480e-13 Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 3
Query: 477 KTTPPDSRFPTTNQAAHCWNLYNQWVLALKKAD--GDESNPDSLKTRQAAASLCPIEWVRCEEW 662
KT P DSRFPT NQA HCWNLYN+WVL KKA+ GD++ + R A +LCP EW E+W
Sbjct: 9 KTAPSDSRFPTVNQANHCWNLYNEWVLCTKKAEEAGDDAKK-CYRKRHNALALCPDEWT--EKW 69
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A8J2WWH0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWH0_9STRA) HSP 1 Score: 75.1 bits (183), Expect = 8.030e-13 Identity = 50/144 (34.72%), Postives = 63/144 (43.75%), Query Frame = 3
Query: 450 KTMATTVP-LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKT-RQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
K M+ +P +KTTP D RFP+TNQA+HCWN YN++V+ LKK + DE D+ K RQ A S+CP +W W KWDEEREEGTF G+K
Sbjct: 30 KKMSGLIPHIKTTPYDKRFPSTNQASHCWNRYNEYVMCLKKTESDE---DACKPMRQLALSICPDDW--------------------------------WN----------------------------KWDEEREEGTFSGVK 110
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A6T5Y8J0_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5Y8J0_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 1.280e-11 Identity = 44/135 (32.59%), Postives = 57/135 (42.22%), Query Frame = 3
Query: 474 LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKT-RQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
++TTPPD+RFP+ NQA HCWN YN+W++ LK+ DE DS K RQ A S+CP ++ KWDEEREEGT+PG+K
Sbjct: 34 VRTTPPDARFPSFNQAGHCWNRYNEWLVCLKQTGKDE---DSCKPMRQLATSVCP------------------------------------------------------------SIMYDKWDEEREEGTYPGVK 105
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A1E7FVA6_9STRA (Cytochrome c oxidase subunit H n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FVA6_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.700e-11 Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 3
Query: 474 LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKTRQAAASLCPIEWVRCEEWPLS 671
++TTP D+RFP+ NQA HCWN YN+W+L KK GD+++ RQ A+S+CP W+ E W S
Sbjct: 32 VRTTPRDARFPSQNQALHCWNRYNEWLLC-KKQSGDDADEKCQVYRQYASSICPSPWI--ENWDES 94
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A7S4JKT8_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JKT8_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 1.700e-11 Identity = 42/134 (31.34%), Postives = 56/134 (41.79%), Query Frame = 3
Query: 474 LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKTRQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
++TTP D+RFP+ NQ+ HCWN YN+W+L LK GDE+ + RQ A S+CP S+W+ KWDEEREE T+PG+K
Sbjct: 33 VRTTPRDARFPSQNQSNHCWNRYNEWLLCLKSTGGDEAGCKHM--RQMAVSICP---------------------------------SIWS---------------------------EKWDEEREENTYPGIK 104
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A6V2AAL1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2AAL1_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 2.860e-11 Identity = 41/134 (30.60%), Postives = 54/134 (40.30%), Query Frame = 3
Query: 474 LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKTRQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
++TTP D+RFP+ NQA HCWN YN+W++ LK+ GDE ++ RQ A ++CP W KWDEEREE TFPG+K
Sbjct: 28 VRTTPRDARFPSQNQANHCWNRYNEWLVCLKQTKGDEEGCQNM--RQLALNICPAIWSE------------------------------------------------------------KWDEEREEKTFPGVK 99
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Match: A0A7S4JKQ2_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JKQ2_9STRA) HSP 1 Score: 70.9 bits (172), Expect = 4.850e-11 Identity = 42/134 (31.34%), Postives = 56/134 (41.79%), Query Frame = 3
Query: 474 LKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKTRQAAASLCPIEWVRCEEWPLSVLLCFIRVTRTRLVNIL*ALRSLWTLVKFAALCVDHISFFNTSLHPPPAL*VTKWDEEREEGTFPGLK 875
++TTP D+RFP+ NQ+ HCWN YN+W+L LK GDE+ + RQ A S+CP S+W+ KWDEEREE T+PG+K
Sbjct: 75 VRTTPRDARFPSQNQSNHCWNRYNEWLLCLKSTGGDEAGCKHM--RQMAVSICP---------------------------------SIWS---------------------------EKWDEEREENTYPGIK 146 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6496.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6496.3.2 >prot_P-wetherbeei_contig6496.3.2 ID=prot_P-wetherbeei_contig6496.3.2|Name=mRNA_P-wetherbeei_contig6496.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp MATTVPLKTTPPDSRFPTTNQAAHCWNLYNQWVLALKKADGDESNPDSLKback to top mRNA from alignment at P-wetherbeei_contig6496:1154..2751- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6496.3.2 ID=mRNA_P-wetherbeei_contig6496.3.2|Name=mRNA_P-wetherbeei_contig6496.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1598bp|location=Sequence derived from alignment at P-wetherbeei_contig6496:1154..2751- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6496:1154..2751- >mRNA_P-wetherbeei_contig6496.3.2 ID=mRNA_P-wetherbeei_contig6496.3.2|Name=mRNA_P-wetherbeei_contig6496.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig6496:1154..2751- (Phaeothamnion wetherbeei SAG_119_79)back to top |