mRNA_P-wetherbeei_contig6485.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6485.2.1
Unique NamemRNA_P-wetherbeei_contig6485.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6485.2.1 vs. uniprot
Match: A0A835Z9Z9_9STRA (Sulfate transporter family-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Z9_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 9.240e-15
Identity = 39/55 (70.91%), Postives = 49/55 (89.09%), Query Frame = 1
Query:  292 GLAYASLANMPSEYGLYTSLMPPFLYMLMGTCQQMSFGVTAIESILVRTNVRRLI 456
            GLAYA LANMP++YGLYTSLMPPF+YMLMGTC Q+SFGVTAIE++ +  +VR ++
Sbjct:  114 GLAYALLANMPAQYGLYTSLMPPFIYMLMGTCSQISFGVTAIEALFLGESVRGVL 168          
BLAST of mRNA_P-wetherbeei_contig6485.2.1 vs. uniprot
Match: A0A835ZG79_9STRA (Sulfate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG79_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.080e-14
Identity = 40/55 (72.73%), Postives = 48/55 (87.27%), Query Frame = 1
Query:  292 GLAYASLANMPSEYGLYTSLMPPFLYMLMGTCQQMSFGVTAIESILVRTNVRRLI 456
            GLAYA LANMP EYGLYTSLMPPF+YMLMGTC Q+SFGVTAIE++ +  +VR ++
Sbjct:  130 GLAYALLANMPPEYGLYTSLMPPFIYMLMGTCAQVSFGVTAIEALFLGESVRGVL 184          
BLAST of mRNA_P-wetherbeei_contig6485.2.1 vs. uniprot
Match: A0A836CKT0_9STRA (Sulfate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKT0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 4.220e-14
Identity = 39/51 (76.47%), Postives = 46/51 (90.20%), Query Frame = 1
Query:  292 GLAYASLANMPSEYGLYTSLMPPFLYMLMGTCQQMSFGVTAIESILVRTNV 444
            GLAYA LANMP++YGLYTSLMPPFLYMLMGTC Q+SFGVTAIE++ +  +V
Sbjct:  121 GLAYALLANMPAQYGLYTSLMPPFLYMLMGTCAQISFGVTAIEALFLGESV 171          
BLAST of mRNA_P-wetherbeei_contig6485.2.1 vs. uniprot
Match: A0A836CLR3_9STRA (Sulfate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLR3_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.500e-13
Identity = 37/64 (57.81%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  292 GLAYASLANMPSEYGLYTSLMPPFLYMLMGTCQQMSFGVTAIESILVRTNVRRLINASGGAAQE 483
            GLAYA LANMP +YGLYTSLMPPF+YML+G+C Q+SFGVTAIE++++   V+ ++     +++E
Sbjct:  122 GLAYALLANMPPQYGLYTSLMPPFIYMLLGSCAQISFGVTAIEALVLGEYVKSVLGEDVVSSEE 185          
BLAST of mRNA_P-wetherbeei_contig6485.2.1 vs. uniprot
Match: A0A6H5KTA3_9PHAE (SulP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA3_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 5.190e-11
Identity = 34/59 (57.63%), Postives = 45/59 (76.27%), Query Frame = 1
Query:  292 GLAYASLANMPSEYGLYTSLMPPFLYMLMGTCQQMSFGVTAIESILVRTNVRRLINASG 468
            G++YA LAN+P+ YGLYTSL+PP +Y+L GTC Q+S GV+AIES+LV   V  +I   G
Sbjct:  131 GMSYALLANLPAVYGLYTSLIPPLMYLLFGTCNQLSLGVSAIESLLVAAGVSEVIGWIG 189          
BLAST of mRNA_P-wetherbeei_contig6485.2.1 vs. uniprot
Match: D7G4W8_ECTSI (Sulfate transporter, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W8_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 5.360e-11
Identity = 33/55 (60.00%), Postives = 45/55 (81.82%), Query Frame = 1
Query:  292 GLAYASLANMPSEYGLYTSLMPPFLYMLMGTCQQMSFGVTAIESILVRTNVRRLI 456
            G++YA LAN+P+ YGLYTSL+PP +Y+L GTC Q+S GV+AIES+LV   V ++I
Sbjct:  193 GMSYALLANLPAVYGLYTSLVPPLMYLLFGTCNQLSLGVSAIESLLVAAGVSQVI 247          
BLAST of mRNA_P-wetherbeei_contig6485.2.1 vs. uniprot
Match: A0A835Z0R2_9STRA (Sulfate transporter family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0R2_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.360e-8
Identity = 29/45 (64.44%), Postives = 39/45 (86.67%), Query Frame = 1
Query:  292 GLAYASLANMPSEYGLYTSLMPPFLYMLMGTCQQMSFGVTAIESI 426
            GLAYA LA +P++YGLYT LMPP +YML+GTC+Q+S G +AIE++
Sbjct:  100 GLAYALLAYLPAQYGLYTCLMPPIIYMLLGTCKQLSLGSSAIEAL 144          
BLAST of mRNA_P-wetherbeei_contig6485.2.1 vs. uniprot
Match: A0A392RAK3_9FABA (Sulfate transporter 2.1-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392RAK3_9FABA)

HSP 1 Score: 60.1 bits (144), Expect = 4.540e-8
Identity = 25/59 (42.37%), Postives = 45/59 (76.27%), Query Frame = 1
Query:  289 RGLAYASLANMPSEYGLYTSLMPPFLYMLMGTCQQMSFGVTAIESILVRTNVRRLINAS 465
            + + YA+LAN+  +YGLYTS++PP +Y +MGT ++++ G  A+ S+L+ + V++LI+ S
Sbjct:    4 QSIGYATLANLAPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMVQKLIDPS 62          
BLAST of mRNA_P-wetherbeei_contig6485.2.1 vs. uniprot
Match: A0A7C3GEB6_9BACT (Solute carrier 26 family protein n=1 Tax=Phaeodactylibacter sp. TaxID=1940289 RepID=A0A7C3GEB6_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 1.230e-7
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query:  289 RGLAYASLANMPSEYGLYTSLMPPFLYMLMGTCQQMSFGVTAIESILVRTNVRRL 453
            +G+AYA LA MP  YGLYT L+P FLY +MGT +QMS G  A+ S+LV   V +L
Sbjct:   56 QGMAYAMLAGMPPIYGLYTGLIPLFLYAIMGTSRQMSIGPVAVSSLLVLAGVSQL 110          
BLAST of mRNA_P-wetherbeei_contig6485.2.1 vs. uniprot
Match: A0A8J4GUG2_9CHLO (STAS domain-containing protein n=2 Tax=Volvox TaxID=3066 RepID=A0A8J4GUG2_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 5.650e-7
Identity = 27/74 (36.49%), Postives = 47/74 (63.51%), Query Frame = 1
Query:  289 RGLAYASLANMPSEYGLYTSLMPPFLYMLMGTCQQMSFGVTAIESILVRTNVRRLINASGGAAQESCKNPASQP 510
            +G++YA+LA +PS YGLY + MP   Y L+G+ +Q++ G  A+ S+L+  N++ L+  S G +  +    A +P
Sbjct:  136 QGMSYATLAGLPSVYGLYGAFMPCLTYALVGSSRQLAVGPVAVTSLLIGNNLKDLVEGSSGISNPNTPTDAQKP 209          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6485.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z9Z9_9STRA9.240e-1570.91Sulfate transporter family-domain-containing prote... [more]
A0A835ZG79_9STRA1.080e-1472.73Sulfate transporter family-domain-containing prote... [more]
A0A836CKT0_9STRA4.220e-1476.47Sulfate transporter family-domain-containing prote... [more]
A0A836CLR3_9STRA3.500e-1357.81Sulfate transporter family-domain-containing prote... [more]
A0A6H5KTA3_9PHAE5.190e-1157.63SulP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G4W8_ECTSI5.360e-1160.00Sulfate transporter, putative n=1 Tax=Ectocarpus s... [more]
A0A835Z0R2_9STRA1.360e-864.44Sulfate transporter family-domain-containing prote... [more]
A0A392RAK3_9FABA4.540e-842.37Sulfate transporter 2.1-like (Fragment) n=1 Tax=Tr... [more]
A0A7C3GEB6_9BACT1.230e-756.36Solute carrier 26 family protein n=1 Tax=Phaeodact... [more]
A0A8J4GUG2_9CHLO5.650e-736.49STAS domain-containing protein n=2 Tax=Volvox TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6485contigP-wetherbeei_contig6485:2039..2993 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7G4W8
PFAMsSTAS,Sulfate_transp
Model size955
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.76e-10
EggNOG OGsCOG0659@1|root,KOG0236@2759|Eukaryota
Descriptionsecondary active sulfate transmembrane transporter activity
Cds size210
COG categoryU
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.968665-UTR-P-wetherbeei_contig6485:2038..23561683186916.968665-UTR-P-wetherbeei_contig6485:2038..2356Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6485 2039..2356 +
1683186917.002173-UTR-P-wetherbeei_contig6485:2566..29931683186917.002173-UTR-P-wetherbeei_contig6485:2566..2993Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6485 2567..2993 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186916.9879522-CDS-P-wetherbeei_contig6485:2356..25661683186916.9879522-CDS-P-wetherbeei_contig6485:2356..2566Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6485 2357..2566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6485.2.1prot_P-wetherbeei_contig6485.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6485 2357..2566 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6485.2.1

>prot_P-wetherbeei_contig6485.2.1 ID=prot_P-wetherbeei_contig6485.2.1|Name=mRNA_P-wetherbeei_contig6485.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
MPSEYGLYTSLMPPFLYMLMGTCQQMSFGVTAIESILVRTNVRRLINASG
GAAQESCKNPASQPTFPHL*
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mRNA from alignment at P-wetherbeei_contig6485:2039..2993+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6485.2.1 ID=mRNA_P-wetherbeei_contig6485.2.1|Name=mRNA_P-wetherbeei_contig6485.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=955bp|location=Sequence derived from alignment at P-wetherbeei_contig6485:2039..2993+ (Phaeothamnion wetherbeei SAG_119_79)
CGTGGACACGCTGGTCAACTACAAGAAGAGCTACCTGAGCTTCGACATCT CGGCCGGCCTCGTTGAAGGTGTCATGAAGGTCCCGATGTACGTTCTACTT TCCCATCTTCCCTTACTGTAAAAGCAATTCCGCGGCGCTATCCAGTGGGA CCCCGTCCGGCTTTACCGGCATCCCATCATCTTCTAATCTTTGCCGCTCT GCTCCTCCCGTTGCCATCGCAATCCCGTATAATATGTCGGGATCTGTGCG TCTTTCTTCTCTTCTGGATCTGTTCGTATCTTTTCTGCAGGGGCCTGGCA TACGCGTCACTGGCCAACATGCCGAGCGAGTACGGGCTATACACGTCACT CATGCCGCCGTTCCTCTACATGCTCATGGGCACGTGCCAGCAGATGAGCT TCGGCGTCACTGCCATCGAGTCCATCCTGGTGAGAACGAACGTACGGAGA TTGATAAATGCCAGTGGTGGGGCGGCTCAAGAATCCTGCAAGAATCCTGC CTCTCAACCAACATTCCCGCATCTATGATCTCGTGCAAGAATCGACCTGC GTCGCTCACCTCTCAATGCTCGCCACTCACTGCTTTGTCGAGCAGCTTGC GGACTCGGTGCGTGGCGTGATCGGAGACGAGGTGGCGGACAGCGAAGACC CGGCCATCATCGCCCAGAAGGTCCAGTACACCCTCTTCTTCAGGTCCGTC CGTCGCTTTGTCTAGAGTTTTCCGCTCGGCTCTTTAGCGTTCGTATGGAT GTTATTAGTGCTGCTTGCCTGGGTCATTGCCTCGTGTTCCAATCTGCCTA TGTAACACATTGGGCCTCGATGCAGCTCCCCGCAACCAGTCTCAGCACTC TTGCAAACGATTTCCATCATTGCTGAGGCTTCGCCAGGTGCTCCTTCAGT GCGAATCACCCCTCCCCCCTTCCCTAATTGTCTCTCCCCTCCCCTCCACC TGCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6485:2039..2993+

>mRNA_P-wetherbeei_contig6485.2.1 ID=mRNA_P-wetherbeei_contig6485.2.1|Name=mRNA_P-wetherbeei_contig6485.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig6485:2039..2993+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGAGCGAGTACGGGCTATACACGTCACTCATGCCGCCGTTCCTCTA
CATGCTCATGGGCACGTGCCAGCAGATGAGCTTCGGCGTCACTGCCATCG
AGTCCATCCTGGTGAGAACGAACGTACGGAGATTGATAAATGCCAGTGGT
GGGGCGGCTCAAGAATCCTGCAAGAATCCTGCCTCTCAACCAACATTCCC
GCATCTATGA
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