mRNA_P-wetherbeei_contig644.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig644.2.1
Unique NamemRNA_P-wetherbeei_contig644.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig644.2.1 vs. uniprot
Match: A0A3C0TXV2_9PROT (50S ribosomal protein L36 n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TXV2_9PROT)

HSP 1 Score: 80.5 bits (197), Expect = 4.250e-19
Identity = 40/41 (97.56%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:   40 MKVRSSLRSLKTRHKDCRIVRRKGKVYVINKTNPRFKARQG 162
            MKVRSSLRSLK RHKDCRIVRRKGKVYVINKTNPRFKARQG
Sbjct:    1 MKVRSSLRSLKVRHKDCRIVRRKGKVYVINKTNPRFKARQG 41
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BLAST of mRNA_P-wetherbeei_contig644.2.1 vs. uniprot
Match: A0A6I7P5F1_9PROT (50S ribosomal protein L36 n=1 Tax=Geminicoccaceae bacterium TaxID=2448052 RepID=A0A6I7P5F1_9PROT)

HSP 1 Score: 77.0 bits (188), Expect = 1.010e-17
Identity = 35/41 (85.37%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:   40 MKVRSSLRSLKTRHKDCRIVRRKGKVYVINKTNPRFKARQG 162
            MK+R+SLRS KTRHKDCRI+RRKG+VY+INKTNPRFKARQG
Sbjct:    1 MKIRNSLRSAKTRHKDCRIIRRKGRVYIINKTNPRFKARQG 41
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BLAST of mRNA_P-wetherbeei_contig644.2.1 vs. uniprot
Match: A0A059DVG3_9PROT (50S ribosomal protein L36 n=2 Tax=Hyphomonas TaxID=85 RepID=A0A059DVG3_9PROT)

HSP 1 Score: 76.6 bits (187), Expect = 2.760e-17
Identity = 35/42 (83.33%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   37 PMKVRSSLRSLKTRHKDCRIVRRKGKVYVINKTNPRFKARQG 162
            PMKVRSSL+SLK+RH+DC++VRRKGKVYVINKT+PRFKA+QG
Sbjct:   28 PMKVRSSLKSLKSRHRDCKVVRRKGKVYVINKTDPRFKAKQG 69
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BLAST of mRNA_P-wetherbeei_contig644.2.1 vs. uniprot
Match: A0A257J8G8_9PROT (50S ribosomal protein L36 n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A257J8G8_9PROT)

HSP 1 Score: 75.9 bits (185), Expect = 2.890e-17
Identity = 35/41 (85.37%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   40 MKVRSSLRSLKTRHKDCRIVRRKGKVYVINKTNPRFKARQG 162
            MKVRSSL++LKTRH+DC++VRRKG+VYVINKTNPRFKARQG
Sbjct:    1 MKVRSSLKTLKTRHRDCKLVRRKGRVYVINKTNPRFKARQG 41
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BLAST of mRNA_P-wetherbeei_contig644.2.1 vs. uniprot
Match: A0A099F2F9_9RHOB (50S ribosomal protein L36 n=9 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A099F2F9_9RHOB)

HSP 1 Score: 75.5 bits (184), Expect = 4.100e-17
Identity = 35/41 (85.37%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   40 MKVRSSLRSLKTRHKDCRIVRRKGKVYVINKTNPRFKARQG 162
            MKVR+SLRSLK+RH+DC+IVRRKG++YVINKTNPRFKARQG
Sbjct:    1 MKVRNSLRSLKSRHRDCQIVRRKGRIYVINKTNPRFKARQG 41
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BLAST of mRNA_P-wetherbeei_contig644.2.1 vs. uniprot
Match: RL36_PARDP (50S ribosomal protein L36 n=83 Tax=Proteobacteria TaxID=1224 RepID=RL36_PARDP)

HSP 1 Score: 75.1 bits (183), Expect = 5.830e-17
Identity = 34/41 (82.93%), Postives = 41/41 (100.00%), Query Frame = 1 
Query:   40 MKVRSSLRSLKTRHKDCRIVRRKGKVYVINKTNPRFKARQG 162
            MKVR+SLRSLK+RH+DC++VRRKG++YVINKTNPRFKARQG
Sbjct:    1 MKVRNSLRSLKSRHRDCQVVRRKGRIYVINKTNPRFKARQG 41
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BLAST of mRNA_P-wetherbeei_contig644.2.1 vs. uniprot
Match: A0A1T4T8A6_9HYPH (50S ribosomal protein L36 n=9 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A1T4T8A6_9HYPH)

HSP 1 Score: 74.7 bits (182), Expect = 8.290e-17
Identity = 35/41 (85.37%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:   40 MKVRSSLRSLKTRHKDCRIVRRKGKVYVINKTNPRFKARQG 162
            MK+R SL+S+K RHKDCRIVRRKG+VYVINKTNPRFKARQG
Sbjct:    1 MKIRHSLKSVKARHKDCRIVRRKGRVYVINKTNPRFKARQG 41
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BLAST of mRNA_P-wetherbeei_contig644.2.1 vs. uniprot
Match: A0A366W0L5_9RHOB (50S ribosomal protein L36 n=4 Tax=Rhodobacterales TaxID=204455 RepID=A0A366W0L5_9RHOB)

HSP 1 Score: 74.3 bits (181), Expect = 2.100e-16
Identity = 36/41 (87.80%), Postives = 39/41 (95.12%), Query Frame = 1 
Query:   40 MKVRSSLRSLKTRHKDCRIVRRKGKVYVINKTNPRFKARQG 162
            MKVR+SLRSLK RH+DCRIVRRKG+VYVINKT PRFKARQG
Sbjct:   26 MKVRNSLRSLKQRHRDCRIVRRKGRVYVINKTQPRFKARQG 66
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BLAST of mRNA_P-wetherbeei_contig644.2.1 vs. uniprot
Match: C6XR76_HIRBI (50S ribosomal protein L36 n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) TaxID=582402 RepID=C6XR76_HIRBI)

HSP 1 Score: 73.6 bits (179), Expect = 2.380e-16
Identity = 34/41 (82.93%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:   40 MKVRSSLRSLKTRHKDCRIVRRKGKVYVINKTNPRFKARQG 162
            MKVRSSL+SLK RHKDC++VRRKG+VYVINKT+PRFKA+QG
Sbjct:    1 MKVRSSLKSLKNRHKDCKVVRRKGRVYVINKTDPRFKAKQG 41
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BLAST of mRNA_P-wetherbeei_contig644.2.1 vs. uniprot
Match: A0A344PHV9_9RHOB (50S ribosomal protein L36 n=2 Tax=Paracoccus TaxID=265 RepID=A0A344PHV9_9RHOB)

HSP 1 Score: 73.2 bits (178), Expect = 3.380e-16
Identity = 33/41 (80.49%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:   40 MKVRSSLRSLKTRHKDCRIVRRKGKVYVINKTNPRFKARQG 162
            MKVR+SLRSLK RHKDC+IVRR+G++Y++NKTNPRFKARQG
Sbjct:    1 MKVRNSLRSLKERHKDCQIVRRRGRLYIVNKTNPRFKARQG 41
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig644.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C0TXV2_9PROT4.250e-1997.5650S ribosomal protein L36 n=1 Tax=Alphaproteobacte... [more]
A0A6I7P5F1_9PROT1.010e-1785.3750S ribosomal protein L36 n=1 Tax=Geminicoccaceae ... [more]
A0A059DVG3_9PROT2.760e-1783.3350S ribosomal protein L36 n=2 Tax=Hyphomonas TaxID... [more]
A0A257J8G8_9PROT2.890e-1785.3750S ribosomal protein L36 n=3 Tax=Alphaproteobacte... [more]
A0A099F2F9_9RHOB4.100e-1785.3750S ribosomal protein L36 n=9 Tax=Alphaproteobacte... [more]
RL36_PARDP5.830e-1782.9350S ribosomal protein L36 n=83 Tax=Proteobacteria ... [more]
A0A1T4T8A6_9HYPH8.290e-1785.3750S ribosomal protein L36 n=9 Tax=Alphaproteobacte... [more]
A0A366W0L5_9RHOB2.100e-1687.8050S ribosomal protein L36 n=4 Tax=Rhodobacterales ... [more]
C6XR76_HIRBI2.380e-1682.9350S ribosomal protein L36 n=1 Tax=Hirschia baltica... [more]
A0A344PHV9_9RHOB3.380e-1680.4950S ribosomal protein L36 n=2 Tax=Paracoccus TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig644contigP-wetherbeei_contig644:639..803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog391616.OA238_c40450
Preferred namerpmJ
PFAMsRibosomal_L36
Model size165
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02919
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.65e-18
EggNOG OGsCOG0257@1|root,COG0257@2|Bacteria,1NGBJ@1224|Proteobacteria,2UJAG@28211|Alphaproteobacteria
DescriptionBelongs to the bacterial ribosomal protein bL36 family
Cds size165
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186913.7348912-CDS-P-wetherbeei_contig644:638..8031683186913.7348912-CDS-P-wetherbeei_contig644:638..803Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig644 639..803 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig644.2.1prot_P-wetherbeei_contig644.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig644 639..803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig644.2.1

>prot_P-wetherbeei_contig644.2.1 ID=prot_P-wetherbeei_contig644.2.1|Name=mRNA_P-wetherbeei_contig644.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=55bp
QVAGNRQKYRFIPMKVRSSLRSLKTRHKDCRIVRRKGKVYVINKTNPRFK
ARQG*
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mRNA from alignment at P-wetherbeei_contig644:639..803+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig644.2.1 ID=mRNA_P-wetherbeei_contig644.2.1|Name=mRNA_P-wetherbeei_contig644.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig644:639..803+ (Phaeothamnion wetherbeei SAG_119_79)
CAAGTCGCGGGAAACCGCCAAAAATACAGGTTTATTCCCATGAAAGTCAG
AAGCTCGCTGCGGTCACTCAAGACCCGCCACAAAGATTGCCGCATCGTAC
GCCGCAAGGGCAAGGTTTATGTGATCAACAAAACCAACCCGCGCTTCAAG
GCCCGTCAAGGCTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig644:639..803+

>mRNA_P-wetherbeei_contig644.2.1 ID=mRNA_P-wetherbeei_contig644.2.1|Name=mRNA_P-wetherbeei_contig644.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=165bp|location=Sequence derived from alignment at P-wetherbeei_contig644:639..803+ (Phaeothamnion wetherbeei SAG_119_79)
CAAGTCGCGGGAAACCGCCAAAAATACAGGTTTATTCCCATGAAAGTCAG
AAGCTCGCTGCGGTCACTCAAGACCCGCCACAAAGATTGCCGCATCGTAC
GCCGCAAGGGCAAGGTTTATGTGATCAACAAAACCAACCCGCGCTTCAAG
GCCCGTCAAGGCTGA
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