mRNA_P-wetherbeei_contig6415.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6415.1.2
Unique NamemRNA_P-wetherbeei_contig6415.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6415.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6415contigP-wetherbeei_contig6415:4..3399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog10224.XP_006811515.1
PFAMsSTART
Model size2324
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons5
Evalue0.000691
EggNOG OGs28N7D@1|root,2QUSR@2759|Eukaryota,391IE@33154|Opisthokonta,3C73X@33208|Metazoa,3DAUV@33213|Bilateria
DescriptionSTART domain
Cds size2322
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186912.0178432-CDS-P-wetherbeei_contig6415:3..2721683186912.0178432-CDS-P-wetherbeei_contig6415:3..272Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6415 4..272 +
1683186912.0314252-CDS-P-wetherbeei_contig6415:572..6771683186912.0314252-CDS-P-wetherbeei_contig6415:572..677Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6415 573..677 +
1683186912.044214-CDS-P-wetherbeei_contig6415:975..15031683186912.044214-CDS-P-wetherbeei_contig6415:975..1503Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6415 976..1503 +
1683186912.0571952-CDS-P-wetherbeei_contig6415:1693..30281683186912.0571952-CDS-P-wetherbeei_contig6415:1693..3028Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6415 1694..3028 +
1683186912.0663984-CDS-P-wetherbeei_contig6415:3314..33991683186912.0663984-CDS-P-wetherbeei_contig6415:3314..3399Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6415 3315..3399 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6415.1.2prot_P-wetherbeei_contig6415.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6415 4..3399 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6415.1.2

>prot_P-wetherbeei_contig6415.1.2 ID=prot_P-wetherbeei_contig6415.1.2|Name=mRNA_P-wetherbeei_contig6415.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=774bp
AYGGRGCDEDGNRHSNRLRSVEAPCEGNVDAPPGIAAFATAAGRTEGAPE
ETTSRRPAAAVAVALVSADGATNAPPLPPGFIRAEVILAGYVLRPGLVGG
VEGTHVTYMVHSDLKGSVPTSVVNTVAKRQPLGIANIGDIASRLAGTSNA
RPPVPLTEAALTALFARPSGDNDRGGDGGDGGRSGTRDTCGPEGEGGDVS
TSPLLELSGAAAAAAAGSEPRTSMTMAGATGMAVLFATVAPLAAAAVEVT
TVAEAAPCAACMVLWLLFPETRWLSGIGIVAAAAATVRLAARIWLRPACD
RGPAGEPRGRHVIRFAVDVKAVRRQLDGARRRHNGGIGGGGGGGSAGGGS
SSGGGDCAGSNNSSAAGSQVTVAHLAAMAAAAALREQPGMVGQMTANGFV
PRDGGAPRFLNHGGGSVGGGDPDRGSSSGDGSGRARYDNPGEISRDDNIR
VELLALRTASTAPTGMEGRSSGSGGGGSGNGVRRAVGGRFGWTTGDTMMP
EGRVLLKNPDRAASVADVAAAAAVAAAAAVGRAPSISLSPDFLCRDAPNA
LDLLWQRLRSVVRGSLLWDELARAARWNGLPLPGAANCLVIASPPASDAP
AGMPSSAAAAAAAVGLSMLLPRAGAATATQPLPPGASPMVSLSRVATTAT
VAAAAAAAPFLGDLDVCVVPDADGPAGRKRSMPVIVTIGGVSIRPQASTG
GGSLSGGGGSGGHGSVAGTVGGGRQAVLNVAVVVESQAGGLQEARRFAER
MQRFMTRGMHRPHAKEISGGVGRL
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mRNA from alignment at P-wetherbeei_contig6415:4..3399+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6415.1.2 ID=mRNA_P-wetherbeei_contig6415.1.2|Name=mRNA_P-wetherbeei_contig6415.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3396bp|location=Sequence derived from alignment at P-wetherbeei_contig6415:4..3399+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTACGGTGGCAGGGGCTGCGACGAGGACGGCAACCGTCACAGCAACCG
TTTGCGCTCTGTGGAGGCGCCCTGTGAGGGCAACGTCGACGCGCCTCCGG
GCATCGCGGCGTTTGCTACCGCGGCCGGGCGGACAGAGGGCGCTCCTGAA
GAGACAACCAGCCGGCGGCCGGCGGCAGCTGTGGCCGTCGCACTCGTAAG
CGCTGACGGCGCGACGAATGCGCCGCCGTTGCCGCCTGGTTTCATTCGGG
CTGAGGTCATCCTTGCCGGGTAAACCTGTTGCCCTCATCCTGCTGTTCTT
GTGGGTAGTTTTGGATGCGTTGCAAGCAGCGGCAGGGCAGGGAGAAAGAG
TCGCTGACGTGCGTTGTATGCCGCCACTTGGGTGTTCGGACAAATTGTGT
GTATGCTCTTCGTGACGCTACTTTTTGTGGCGCTTTCAGGATGGATGCCT
AATTCATTGTGTTCTTACCCTTCCTCGCTGTCCTTTCCTCTGTCATACAT
GCTGCCGATGTGGCGGGCCGACGGCGTGCGCTTTACGGCGGTGCCGCCAC
CGTTCCCGGGCGTTGGCAGGTACGTGCTGCGGCCGGGGTTGGTTGGCGGC
GTGGAGGGCACCCACGTCACGTACATGGTGCACTCGGACTTGAAGGGATC
CGTCCCGACCTCCGTCGTCAACACGTGAGTTGGAGCTGACTGATTCCTTG
CTTGCTATTCCTTGCTTGTTGCTCTCACAGTCACATTTGGTATGTCGCCG
ATGTTACTGGTTGAACAGAGAGTGGTCCTGCTTCTTGTGGTGTCCAGAAA
TTGTTTAAGGTGATTGTACCTCCTTGCTGCCGCCACGCTGCATCTTGCAA
TCAGCTATTGCCTTTCTTTTCCGACAACGGGGTTCACTGGCGGCTGCAAA
CTTAACCAAAAGCAGGCTATGTTCCCTCTTTCCCCCCGCGCTTTCGACAC
CCAATTTTGTGCGCTTCCGCAGCGTGGCGAAGCGTCAACCCCTCGGTATT
GCCAACATAGGCGACATCGCATCACGCCTCGCCGGTACAAGCAACGCAAG
GCCGCCGGTGCCGCTGACGGAGGCGGCGCTCACGGCGCTTTTCGCTCGGC
CCAGCGGCGACAATGATCGTGGTGGCGACGGTGGCGACGGCGGCCGCAGC
GGCACACGGGATACTTGCGGCCCTGAGGGCGAGGGGGGTGACGTGTCGAC
GTCGCCGCTGCTGGAACTGTCGGGCGCCGCCGCCGCCGCAGCCGCCGGCT
CGGAACCACGCACGTCGATGACGATGGCGGGCGCAACAGGGATGGCGGTG
TTGTTCGCGACGGTGGCGCCGCTGGCTGCGGCAGCGGTGGAGGTGACGAC
GGTGGCGGAGGCGGCGCCTTGTGCAGCGTGCATGGTGCTTTGGCTGCTGT
TTCCCGAGACGCGGTGGCTGTCCGGCATCGGTATTGTAGCAGCGGCCGCT
GCCACGGTGCGCCTTGCTGCGCGGATCTGGCTTCGCCCGGCCTGCGATAG
GTGCGTGCAGTGGTATGCTTTCACAAGAATCTTGTTTTCGCATGTTGTAT
TTCTGCGATCTCTTTTTTGAGAAATGATCTGAAATGATGCTATCATAATG
ACTTGCTGCACATCATTGATTCCTGAGCTGATTCATGTGCTGCTATATGA
TTATACGTCTCCTTCAAAACTCGTCTGCTGCGGGCGGCAGAGGCCCAGCG
GGAGAGCCACGCGGGCGGCACGTTATTCGCTTTGCCGTCGACGTCAAAGC
CGTGCGCCGCCAGCTAGACGGCGCCAGAAGAAGGCACAATGGCGGCATTG
GTGGCGGTGGCGGGGGCGGTAGCGCCGGCGGTGGCAGCAGCAGCGGCGGC
GGCGATTGTGCTGGCAGCAACAATTCATCCGCGGCGGGCTCACAAGTAAC
CGTGGCGCACCTGGCGGCCATGGCGGCCGCCGCGGCGCTGCGGGAACAAC
CCGGCATGGTGGGACAGATGACTGCCAACGGCTTTGTGCCGCGCGACGGC
GGCGCTCCTCGCTTCCTGAATCATGGCGGCGGCAGCGTCGGCGGCGGCGA
CCCGGACCGCGGCAGCAGCAGTGGCGACGGCAGCGGTAGAGCGCGGTACG
ACAACCCTGGCGAGATCAGCCGTGACGACAACATCCGCGTCGAATTGCTG
GCGCTGCGAACGGCTTCGACTGCCCCTACCGGCATGGAAGGTCGTAGCAG
TGGCAGCGGCGGCGGCGGCAGTGGCAACGGCGTCCGCCGCGCCGTCGGCG
GCCGCTTTGGCTGGACCACGGGGGATACAATGATGCCGGAGGGGCGTGTG
CTGCTCAAAAATCCAGACCGGGCTGCCAGCGTTGCCGATGTTGCGGCGGC
GGCGGCGGTGGCGGCGGCTGCGGCTGTGGGAAGGGCTCCATCCATCTCGT
TGTCGCCGGACTTCCTGTGTAGAGACGCTCCCAACGCTTTGGACCTACTC
TGGCAGCGCCTGCGGTCCGTAGTTCGTGGATCATTGCTGTGGGACGAGCT
AGCAAGGGCGGCCCGCTGGAACGGCCTTCCACTCCCCGGCGCCGCAAATT
GTCTCGTGATTGCCAGCCCTCCGGCGAGTGACGCACCCGCCGGCATGCCG
TCGTCTGCCGCGGCCGCAGCGGCGGCGGTAGGCTTGTCCATGTTGCTGCC
ACGGGCGGGGGCGGCGACGGCCACCCAACCGCTGCCGCCGGGTGCATCGC
CCATGGTGTCACTGTCCCGTGTGGCTACGACGGCGACGGTAGCGGCGGCG
GCCGCGGCCGCACCATTCCTCGGCGACTTGGACGTTTGCGTGGTTCCTGA
TGCAGATGGCCCCGCCGGCCGGAAACGGTCTATGCCGGTGATTGTCACAA
TCGGCGGTGTCAGCATTCGGCCACAGGCGTCGACGGGAGGCGGCAGCTTG
AGCGGCGGTGGCGGCAGCGGTGGGCACGGCAGCGTCGCCGGAACGGTTGG
GGGTGGGCGGCAAGCTGTTCTTAATGTGGCTGTGGTGGTGGAATCGCAAG
CCGGAGGCCTGCAAGAGGCGCGAAGGTGTGTCAACTGCGCCGCCGGCTAC
ATGCTGCTCTTGCCGCCCTTCTGCTAAGCTGCTCTTTGTCCTTTGTTATC
ACATGCATCCGTCTCTTTGGCACACATCTTTTTGGCTGAGCAGTTATGTC
AAGATTTGATGGTAGCTTCTTGTGTCGAGCACCATCGTGCCTTCACCCAA
TTGTCTTGGTGGCTTCTCCTTTCCGTCTGGCCTTCTGCCTGCATTTACTT
ATGTTGCGTGGTTCTCATTTATCATTCCTCTTCATTTTTCTCTCTCCTTC
TGCCCGAGCAGGTTCGCTGAGCGCATGCAACGCTTTATGACGCGAGGCAT
GCACCGGCCCCACGCGAAGGAAATCAGCGGTGGAGTCGGTAGACTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6415:4..3399+

>mRNA_P-wetherbeei_contig6415.1.2 ID=mRNA_P-wetherbeei_contig6415.1.2|Name=mRNA_P-wetherbeei_contig6415.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2322bp|location=Sequence derived from alignment at P-wetherbeei_contig6415:4..3399+ (Phaeothamnion wetherbeei SAG_119_79)
GCCTACGGTGGCAGGGGCTGCGACGAGGACGGCAACCGTCACAGCAACCG
TTTGCGCTCTGTGGAGGCGCCCTGTGAGGGCAACGTCGACGCGCCTCCGG
GCATCGCGGCGTTTGCTACCGCGGCCGGGCGGACAGAGGGCGCTCCTGAA
GAGACAACCAGCCGGCGGCCGGCGGCAGCTGTGGCCGTCGCACTCGTAAG
CGCTGACGGCGCGACGAATGCGCCGCCGTTGCCGCCTGGTTTCATTCGGG
CTGAGGTCATCCTTGCCGGGTACGTGCTGCGGCCGGGGTTGGTTGGCGGC
GTGGAGGGCACCCACGTCACGTACATGGTGCACTCGGACTTGAAGGGATC
CGTCCCGACCTCCGTCGTCAACACCGTGGCGAAGCGTCAACCCCTCGGTA
TTGCCAACATAGGCGACATCGCATCACGCCTCGCCGGTACAAGCAACGCA
AGGCCGCCGGTGCCGCTGACGGAGGCGGCGCTCACGGCGCTTTTCGCTCG
GCCCAGCGGCGACAATGATCGTGGTGGCGACGGTGGCGACGGCGGCCGCA
GCGGCACACGGGATACTTGCGGCCCTGAGGGCGAGGGGGGTGACGTGTCG
ACGTCGCCGCTGCTGGAACTGTCGGGCGCCGCCGCCGCCGCAGCCGCCGG
CTCGGAACCACGCACGTCGATGACGATGGCGGGCGCAACAGGGATGGCGG
TGTTGTTCGCGACGGTGGCGCCGCTGGCTGCGGCAGCGGTGGAGGTGACG
ACGGTGGCGGAGGCGGCGCCTTGTGCAGCGTGCATGGTGCTTTGGCTGCT
GTTTCCCGAGACGCGGTGGCTGTCCGGCATCGGTATTGTAGCAGCGGCCG
CTGCCACGGTGCGCCTTGCTGCGCGGATCTGGCTTCGCCCGGCCTGCGAT
AGAGGCCCAGCGGGAGAGCCACGCGGGCGGCACGTTATTCGCTTTGCCGT
CGACGTCAAAGCCGTGCGCCGCCAGCTAGACGGCGCCAGAAGAAGGCACA
ATGGCGGCATTGGTGGCGGTGGCGGGGGCGGTAGCGCCGGCGGTGGCAGC
AGCAGCGGCGGCGGCGATTGTGCTGGCAGCAACAATTCATCCGCGGCGGG
CTCACAAGTAACCGTGGCGCACCTGGCGGCCATGGCGGCCGCCGCGGCGC
TGCGGGAACAACCCGGCATGGTGGGACAGATGACTGCCAACGGCTTTGTG
CCGCGCGACGGCGGCGCTCCTCGCTTCCTGAATCATGGCGGCGGCAGCGT
CGGCGGCGGCGACCCGGACCGCGGCAGCAGCAGTGGCGACGGCAGCGGTA
GAGCGCGGTACGACAACCCTGGCGAGATCAGCCGTGACGACAACATCCGC
GTCGAATTGCTGGCGCTGCGAACGGCTTCGACTGCCCCTACCGGCATGGA
AGGTCGTAGCAGTGGCAGCGGCGGCGGCGGCAGTGGCAACGGCGTCCGCC
GCGCCGTCGGCGGCCGCTTTGGCTGGACCACGGGGGATACAATGATGCCG
GAGGGGCGTGTGCTGCTCAAAAATCCAGACCGGGCTGCCAGCGTTGCCGA
TGTTGCGGCGGCGGCGGCGGTGGCGGCGGCTGCGGCTGTGGGAAGGGCTC
CATCCATCTCGTTGTCGCCGGACTTCCTGTGTAGAGACGCTCCCAACGCT
TTGGACCTACTCTGGCAGCGCCTGCGGTCCGTAGTTCGTGGATCATTGCT
GTGGGACGAGCTAGCAAGGGCGGCCCGCTGGAACGGCCTTCCACTCCCCG
GCGCCGCAAATTGTCTCGTGATTGCCAGCCCTCCGGCGAGTGACGCACCC
GCCGGCATGCCGTCGTCTGCCGCGGCCGCAGCGGCGGCGGTAGGCTTGTC
CATGTTGCTGCCACGGGCGGGGGCGGCGACGGCCACCCAACCGCTGCCGC
CGGGTGCATCGCCCATGGTGTCACTGTCCCGTGTGGCTACGACGGCGACG
GTAGCGGCGGCGGCCGCGGCCGCACCATTCCTCGGCGACTTGGACGTTTG
CGTGGTTCCTGATGCAGATGGCCCCGCCGGCCGGAAACGGTCTATGCCGG
TGATTGTCACAATCGGCGGTGTCAGCATTCGGCCACAGGCGTCGACGGGA
GGCGGCAGCTTGAGCGGCGGTGGCGGCAGCGGTGGGCACGGCAGCGTCGC
CGGAACGGTTGGGGGTGGGCGGCAAGCTGTTCTTAATGTGGCTGTGGTGG
TGGAATCGCAAGCCGGAGGCCTGCAAGAGGCGCGAAGGTTCGCTGAGCGC
ATGCAACGCTTTATGACGCGAGGCATGCACCGGCCCCACGCGAAGGAAAT
CAGCGGTGGAGTCGGTAGACTT
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