mRNA_P-wetherbeei_contig6414.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6414.1.1
Unique NamemRNA_P-wetherbeei_contig6414.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A6H5L164_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L164_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 5.680e-24
Identity = 42/63 (66.67%), Postives = 53/63 (84.13%), Query Frame = 1
Query:   58 VDISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPP 246
            VDI+YW+++  D+ WVSPY ++GPA KYVTFEPDC G+NN+RM FET VV A +TGRTLV+PP
Sbjct:  339 VDIAYWKEVPGDESWVSPYSSLGPAAKYVTFEPDCAGWNNVRMAFETVVVFAYVTGRTLVMPP 401          
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A7S4W364_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W364_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.310e-18
Identity = 41/83 (49.40%), Postives = 54/83 (65.06%), Query Frame = 1
Query:   16 SCASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAE-KYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
            SC  H+   S+    D+ YW +I  D E+ SP+    P+E KY+TFEPD GG+NNIRM  ET +V+A+  GRTLVLPP   +Y
Sbjct:    8 SCVDHNGPESIESASDVVYWSNIPSDAEYKSPF--YDPSEEKYLTFEPDHGGWNNIRMSMETVLVMAVAMGRTLVLPPDAGMY 88          
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A6S7ZGN1_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A6S7ZGN1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 9.110e-18
Identity = 37/66 (56.06%), Postives = 47/66 (71.21%), Query Frame = 1
Query:   64 ISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
            + YW+++ KD  W SPYK +GP  KY+ FEPD GG+NN+R+GFE  + LA  TGRT VLPP   VY
Sbjct:  153 VVYWQNLPKDKVWESPYKNLGPKNKYLLFEPDEGGWNNLRLGFEANLALAFATGRTFVLPPRDRVY 218          
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A7S4AJA1_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AJA1_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 5.930e-17
Identity = 38/81 (46.91%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   19 CASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
            C+ HD    +    +++YWRDIK D+ W SP+      + Y+TFEPD GG+NNIRM  ET + +AL  GR LVLPP + +Y
Sbjct:  134 CSEHDGPNRMEDAQEMAYWRDIKPDNSWTSPFLKKDKRQ-YLTFEPDGGGWNNIRMSMETVLTMALAMGRVLVLPPSQKMY 213          
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: B5Y3N4_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3N4_PHATC)

HSP 1 Score: 83.6 bits (205), Expect = 1.090e-16
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = 1
Query:    1 RVLKTSCASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
            R+ + +C ++   L      ++ YW+DI +D ++ SP+   G  ++Y+TFEPD GGFNN+RM  ET + +A  TGRTLVLPP + +Y
Sbjct:   77 RMAQLTCDAYGGPLDKEATDEMVYWQDIPEDSKFKSPFLESG-TQRYLTFEPDIGGFNNVRMSMETVIAIAHATGRTLVLPPEQNIY 162          
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A448ZJR9_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZJR9_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 5.220e-16
Identity = 37/67 (55.22%), Postives = 45/67 (67.16%), Query Frame = 1
Query:   61 DISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
            ++ YWRDI  D  + SPY + G   KY+TFEPD GGFNNIRM  ETA  +A   GR LVLPP + +Y
Sbjct:  133 EMVYWRDIPSDAHFTSPYASYGDDPKYLTFEPDEGGFNNIRMSMETATAMAHAMGRILVLPPEQEIY 199          
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A7S3PYB4_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYB4_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 7.210e-16
Identity = 42/87 (48.28%), Postives = 54/87 (62.07%), Query Frame = 1
Query:   16 SCASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEK-----YVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
            SC+ +          ++ YW DIK D E+VSP+K    A+K     Y+TFEPD GG+NNIRM  ET VV+A   GRTLVLPP + +Y
Sbjct:  223 SCSVYGGPDDESATKEMIYWSDIKSDAEYVSPFKKHNDAKKGSATQYMTFEPDGGGWNNIRMAMETVVVMAHAMGRTLVLPPAQGMY 309          
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: K0RI29_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RI29_THAOC)

HSP 1 Score: 79.7 bits (195), Expect = 7.840e-16
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1
Query:   61 DISYWRDIK--KDDEWVSPYKA--IGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
            D++YW   +  +D+E+VSP+K   +    KY+TFEPD GGFNNIRM  E  +V+A  TGRTLVLPPP+ +Y
Sbjct:  184 DLAYWNSPQGTRDEEFVSPFKVEDLPGKAKYLTFEPDPGGFNNIRMSLENILVIAAATGRTLVLPPPQRIY 254          
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: A0A7S2LNI6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LNI6_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 9.510e-16
Identity = 41/83 (49.40%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   16 SCASHDS-SLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEKYVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
            SC+ H   S  L +++   YW DI  DD +VSP  A     KY+TFEPD GGFNNIRM  ET +V+A    RTLV+PP + +Y
Sbjct:  126 SCSDHGGPSDDLAKEM--IYWSDIPSDDAFVSPIGANSKKRKYLTFEPDGGGFNNIRMSMETMIVMAHAMSRTLVMPPSQGMY 206          
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Match: B5Y3Q8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B5Y3Q8_PHATC)

HSP 1 Score: 80.1 bits (196), Expect = 1.800e-15
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   19 CASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEK---YVTFEPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVY 261
            C  H          ++ YWRDI KD  + SP+++   + +   Y+TFEPD GG+NNIRM  ETAV LAL  GR LVLPP + +Y
Sbjct:   51 CHDHGGPTDSLAAEEMVYWRDIPKDASFASPFRSTASSSQRNQYLTFEPDEGGWNNIRMAMETAVTLALAMGRILVLPPEQNIY 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6414.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L164_9PHAE5.680e-2466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4W364_9STRA3.310e-1849.40Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A6S7ZGN1_9STRA9.110e-1856.06Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S4AJA1_9STRA5.930e-1746.91Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
B5Y3N4_PHATC1.090e-1642.53Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A448ZJR9_9STRA5.220e-1655.22Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S3PYB4_9STRA7.210e-1648.28Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
K0RI29_THAOC7.840e-1653.52Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S2LNI6_9STRA9.510e-1649.40Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
B5Y3Q8_PHATC1.800e-1546.43Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6414contigP-wetherbeei_contig6414:84..675 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2850.Phatr46746
PFAMsO-FucT
Model size291
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.79e-17
EggNOG OGs2B2NM@1|root,2S0D4@2759|Eukaryota
DescriptionGDP-fucose protein O-fucosyltransferase
Cds size291
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186911.9227657-CDS-P-wetherbeei_contig6414:83..1921683186911.9227657-CDS-P-wetherbeei_contig6414:83..192Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6414 84..192 -
1683186911.9351346-CDS-P-wetherbeei_contig6414:493..6751683186911.9351346-CDS-P-wetherbeei_contig6414:493..675Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6414 494..675 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6414.1.1prot_P-wetherbeei_contig6414.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6414 84..675 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6414.1.1

>prot_P-wetherbeei_contig6414.1.1 ID=prot_P-wetherbeei_contig6414.1.1|Name=mRNA_P-wetherbeei_contig6414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
RVLKTSCASHDSSLSLPRQVDISYWRDIKKDDEWVSPYKAIGPAEKYVTF
EPDCGGFNNIRMGFETAVVLALLTGRTLVLPPPRFVYGGKCTCRYS*
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mRNA from alignment at P-wetherbeei_contig6414:84..675-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6414.1.1 ID=mRNA_P-wetherbeei_contig6414.1.1|Name=mRNA_P-wetherbeei_contig6414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=592bp|location=Sequence derived from alignment at P-wetherbeei_contig6414:84..675- (Phaeothamnion wetherbeei SAG_119_79)
CGCGTTCTCAAAACGAGTTGTGCTTCGCATGATTCCTCTCTATCCTTGCC CCGGCAGGTAGACATTTCGTATTGGAGGGACATCAAAAAGGACGACGAGT GGGTGTCCCCGTACAAAGCCATCGGCCCTGCCGAGAAGTACGTAACTTTT GAGCCCGATTGCGGCGGCTTCAACAACATTCGGTGCGTTTCATTTCCTGC TAATGCTCAGCGATGCAGCACTATTTATTGCCTGGCTCAAAGAGTTTTCC TTCCTTTGTAAGTTGGTTGTTTTGCTATGTGCTATTGGGATCCACGACTC CCCAGCTGGAGCTCTCTCTTGCAATTTGAACGGCGGAGGCGGTTCGGAGA AGTCGTCGCGGTTTCCTGCCTGGCATAAAAGTTTTGAATCTCCCTTTCAC CCGTGTCCTCCTGGCGTTGCACTATGCCGAACCAACCGGTCGCCCGCTCA CAACCTCCCCCCCGCCGGGAAACCGCAAAACAGGATGGGTTTCGAGACCG CCGTGGTCCTCGCTCTCCTCACCGGCCGCACCCTAGTGCTGCCGCCCCCC AGGTTCGTCTATGGCGGCAAGTGTACTTGCCGCTACAGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6414:84..675-

>mRNA_P-wetherbeei_contig6414.1.1 ID=mRNA_P-wetherbeei_contig6414.1.1|Name=mRNA_P-wetherbeei_contig6414.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig6414:84..675- (Phaeothamnion wetherbeei SAG_119_79)
CGCGTTCTCAAAACGAGTTGTGCTTCGCATGATTCCTCTCTATCCTTGCC
CCGGCAGGTAGACATTTCGTATTGGAGGGACATCAAAAAGGACGACGAGT
GGGTGTCCCCGTACAAAGCCATCGGCCCTGCCGAGAAGTACGTAACTTTT
GAGCCCGATTGCGGCGGCTTCAACAACATTCGGATGGGTTTCGAGACCGC
CGTGGTCCTCGCTCTCCTCACCGGCCGCACCCTAGTGCTGCCGCCCCCCA
GGTTCGTCTATGGCGGCAAGTGTACTTGCCGCTACAGCTAG
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