mRNA_P-wetherbeei_contig6345.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6345.1.1
Unique NamemRNA_P-wetherbeei_contig6345.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6345.1.1 vs. uniprot
Match: A0A836CMT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMT2_9STRA)

HSP 1 Score: 153 bits (386), Expect = 2.520e-44
Identity = 76/134 (56.72%), Postives = 99/134 (73.88%), Query Frame = 1
Query:    4 RSGARSMEMKRKGKPNVPINARGGYNNMRKMQEAMMQQKNAGNDGNPIFDIFVRTKRANLWYPAASLAGDKNAKATVDAWLTGFVSGLYEDSLKRGIATSVNGNRQNLLDG-VFRTYPELRKEKEGLEFGFKIR 402
            R GAR + MKRKGKPNVPINARGGYNNM K +EAM  Q+ +     P+F+IF RTKRAN+WYP  +L GD+ +KATVDA   GF+S LY ++L++G+A SV G +++ L G + R YP+L KE   LEFGFK++
Sbjct:   47 RGGARGLTMKRKGKPNVPINARGGYNNMMKAEEAMRAQRASTPANLPVFEIFCRTKRANMWYPCGALGGDERSKATVDALSNGFLSDLYRNALEKGVAESVLGPQKSQLKGSITRMYPQLAKEASNLEFGFKVK 180          
BLAST of mRNA_P-wetherbeei_contig6345.1.1 vs. uniprot
Match: A0A7S2WK66_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WK66_9STRA)

HSP 1 Score: 112 bits (279), Expect = 9.320e-28
Identity = 57/136 (41.91%), Postives = 89/136 (65.44%), Query Frame = 1
Query:    4 RSGARSMEMKRKGKPNVPINARGGYNNMRKMQEAMMQQKNAGNDGNPIFDIFVRTKRANLWYPAASLAGDKNAKATVDAWLTGFVS--GLYEDSLKRGIATSV--NGNRQNLLDGVFRTYPELRKEKEGLEFGFKI 399
            R+G  S+ M +KGKPNVPI  RGG+ + ++MQ+ M Q K    DG P+F+++V+T RAN+WYP  S+ GD  AK  V+ W+   +   G+ + ++ R +A+S+   GN +NL+D V + YP L+  K  L+FG+K+
Sbjct:   91 RNGVASL-MAKKGKPNVPIQQRGGFVSNQRMQDQMAQMKPEA-DGYPVFNLYVQTPRANMWYPCGSMKGDSRAKQLVEGWVANSLGMGGMVKGNIDRSVASSIFTGGNDKNLVDQVCQMYPALKPAKNDLQFGYKV 224          
BLAST of mRNA_P-wetherbeei_contig6345.1.1 vs. uniprot
Match: D7FT52_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT52_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 3.760e-27
Identity = 56/133 (42.11%), Postives = 83/133 (62.41%), Query Frame = 1
Query:    1 SRSGARSMEMKRKGKPNVPINARGGYNNMRKMQEAMMQQKNAGNDGNPIFDIFVRTKRANLWYPAASLAGDKNAKATVDAWLTGFVSGLYEDSLKRGIATSVNGNRQNLLDGVFRTYPELRKEKEGLEFGFKI 399
            +R G   + MKRKGKPN  I  RG +N M++      +Q+ A   G P F I+VRTK  N+WYP   + GD  AKATVDA ++G +  + + SL++G+A+SV  NR++L+  V   YP++  ++  L FGFK+
Sbjct:   51 ARQGVSGISMKRKGKPNTNIAQRGSFNQMQQQDMQYQEQRKAMQSGMPSFQIYVRTKVNNMWYPCGLMQGDDKAKATVDAMISGLLKDVSKYSLEKGVASSVLANRKDLVRQVSSAYPQIAGKE--LTFGFKV 181          
BLAST of mRNA_P-wetherbeei_contig6345.1.1 vs. uniprot
Match: A0A7S3P7F3_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7F3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.220e-26
Identity = 58/137 (42.34%), Postives = 81/137 (59.12%), Query Frame = 1
Query:    1 SRSGARSMEMKRKGKPNVPINARGGYNN---MRKMQEAMMQQKNAGNDGNPIFDIFVRTKRANLWYPAASLAGDKNAKATVDAWLTG-FVSGLYEDSLKRGIATSVNGNRQNLLDGVFRTYPELRKEKEGLEFGFKI 399
            S S   ++EMK KGKPNVP   RG Y     M +M+E M+     G DG P+F++FVRTK AN+WYP  S  GD  + A   +W  G  ++G+ +  L  GIA S+  +   L + V R YP+L+K K+  EFG+K+
Sbjct:   34 SASNGATLEMK-KGKPNVPPQMRGQYKKQQEMAQMREQMVAASKPGQDGLPVFNLFVRTKLANVWYPCGSFKGDDRSAALAKSWADGGLLAGISKKQLDSGIAGSLYRDLPKLKETVVRAYPQLKKNKDSFEFGYKL 169          
BLAST of mRNA_P-wetherbeei_contig6345.1.1 vs. uniprot
Match: A0A7S2L426_9STRA (Hypothetical protein n=2 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2L426_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.430e-25
Identity = 51/130 (39.23%), Postives = 82/130 (63.08%), Query Frame = 1
Query:   22 MEMKRKGKPNVPINARGGYNNMRKM---QEAMMQQKNAGNDGNPIFDIFVRTKRANLWYPAASLAGDKNAKATVDAWLT-GFVSGLYEDSLKRGIATSVNGNRQNLLDGVFRTYPELRKEKEGLEFGFKI 399
            M MK KGKPNVP   RG Y   ++M   ++AMM     G DG P+F++F+RTK+ N+WYP  S  GD+ + A   ++   G +SG+ ++ L +G+A S+  +++ L + + R YP+LRK +   E+G+K+
Sbjct:   42 MSMK-KGKPNVPPQMRGSYKRQQEMVSQRDAMMAASQPGTDGLPVFNLFIRTKKGNMWYPCGSFKGDERSAALAKSYADDGMLSGISKNQLDKGVAGSIFRDQKKLEESLCRAYPQLRKSRGDFEYGYKL 170          
BLAST of mRNA_P-wetherbeei_contig6345.1.1 vs. uniprot
Match: A0A1Z5KGR4_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGR4_FISSO)

HSP 1 Score: 103 bits (257), Expect = 6.000e-25
Identity = 51/126 (40.48%), Postives = 78/126 (61.90%), Query Frame = 1
Query:   34 RKGKPNVPINARGGYNN---MRKMQEAMMQQKNAGNDGNPIFDIFVRTKRANLWYPAASLAGDKNAKATVDAWL-TGFVSGLYEDSLKRGIATSVNGNRQNLLDGVFRTYPELRKEKEGLEFGFKI 399
            +KGK NVP+  RG Y     + +M++ M+    AG+DG P+F++FVRTKR N+WYP  S  GD  + A   +W   G ++G+ +  L  GIA S+  +   L + + R +P+LRK K+ LEFG+K+
Sbjct:   53 KKGKSNVPMQMRGQYKKAQELSQMRKEMIAASQAGDDGLPVFNLFVRTKRGNMWYPCGSFKGDDRSAALTKSWADNGLLAGISKKQLDGGIAGSLYRDLDKLKETILRAFPQLRKSKDELEFGYKL 178          
BLAST of mRNA_P-wetherbeei_contig6345.1.1 vs. uniprot
Match: A0A7S3DVU2_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DVU2_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.170e-24
Identity = 56/135 (41.48%), Postives = 85/135 (62.96%), Query Frame = 1
Query:    7 SGARSMEMKRKGKPNVPINARGGYNNMRKMQ---EAMMQQKNAGNDGNPIFDIFVRTKRANLWYPAASLAGDKNAKATVDAWLTG-FVSGLYEDSLKRGIATSVNGNRQNLLDGVFRTYPELRKEKEGLEFGFKI 399
            SGA S+EMK KGK NVP   RG Y   ++MQ   + ++  +    DG P+F++FVRTKRAN+WYP  S  GD+ + A   ++  G F+SG+ +  L  GIA S+  ++  L + + R +P+L+K K+  EFG+K+
Sbjct:   45 SGAASIEMK-KGKANVPPQMRGQYAKQKEMQAMRDQVVASRTPTEDGLPVFNLFVRTKRANVWYPCGSFKGDERSAALAKSYSEGGFLSGISKKQLDGGIAGSLWQDQAKLKESIVRGFPQLKKSKDEFEFGYKL 178          
BLAST of mRNA_P-wetherbeei_contig6345.1.1 vs. uniprot
Match: A0A7S3PUB1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUB1_9STRA)

HSP 1 Score: 102 bits (253), Expect = 2.320e-24
Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = 1
Query:   19 SMEMKRKGKPNVPINARGGYNN---MRKMQEAMMQQKNAGNDGNPIFDIFVRTKRANLWYPAASLAGDKNAKATVDAWLTG-FVSGLYEDSLKRGIATSVNGNRQNLLDGVFRTYPELRKEKEGLEFGFKI 399
            S+EMK KGK NVP   R  Y     MR M+E MM  +  G DG P+F++F+R+ R N+WYP  S  GD  + +  ++W  G  +SG  ++ L  G+A S+  ++  L + + R YP+LRK K+ LEFG+K+
Sbjct:   49 SIEMK-KGKDNVPPAMRAQYKKQREMRDMREQMMDAQTPGADGFPVFNLFIRSPRGNMWYPCGSFKGDDRSSSLCNSWKDGGLLSGTSKNQLDAGVAGSLFRDQSQLKETICRAYPQLRKSKDQLEFGYKL 178          
BLAST of mRNA_P-wetherbeei_contig6345.1.1 vs. uniprot
Match: A0A6T9ZNM7_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A6T9ZNM7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.030e-23
Identity = 56/131 (42.75%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   19 SMEMKRKGKPNVPINARGGYNN---MRKMQEAMMQQKNAGNDGNPIFDIFVRTKRANLWYPAASLAGDKNAKATVDAWLTG-FVSGLYEDSLKRGIATSVNGNRQNLLDGVFRTYPELRKEKEGLEFGFKI 399
            SMEMK KGK NVP   RG Y     M +MQ+ M      G DG P+F++FVRTK   +WYP  S  GD+ + A   ++  G  +SG+ +  L  GIA S+  +   L + V R YP+LRK+++ LEFG+K+
Sbjct:   54 SMEMK-KGKANVPPQMRGQYERQKEMSQMQQQMAAASKPGADGFPVFNLFVRTKSQKIWYPCGSFKGDERSAALSKSYSEGGLLSGISKKQLDGGIAGSLYSDLNKLKETVMRAYPQLRKQRDNLEFGYKL 183          
BLAST of mRNA_P-wetherbeei_contig6345.1.1 vs. uniprot
Match: L1IIK2_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IIK2_GUITC)

HSP 1 Score: 98.2 bits (243), Expect = 1.550e-23
Identity = 44/119 (36.97%), Postives = 74/119 (62.18%), Query Frame = 1
Query:   52 VPINARGGYNNMRKMQEAMMQQKNAGNDGNPIFDIFVRTKRANLWYPAASLAGDKNAKATVDAWLTG--FVSGLYEDSLKRGIATSVNGNRQNLLDGVFRTYPELRKEKEGLEFGFKIR 402
            VPIN RG      +M++   Q     +DG P+F++FVR+KRA +WYPA +L GD  +K+ V+AW     F+   Y+ +L +G+A S+  ++   ++ V + YP+L+  +  LEFG+++R
Sbjct:    7 VPINMRGEMQKRAQMEQVRQQMMGDDSDGLPVFNVFVRSKRAGIWYPAGTLKGDARSKSLVEAWRDNSLFLKDQYKSTLDKGMAKSLFESKDKFVESVIKMYPQLKNSRGELEFGYRVR 125          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6345.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CMT2_9STRA2.520e-4456.72Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WK66_9STRA9.320e-2841.91Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
D7FT52_ECTSI3.760e-2742.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3P7F3_9STRA4.220e-2642.34Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S2L426_9STRA3.430e-2539.23Hypothetical protein n=2 Tax=Leptocylindrus danicu... [more]
A0A1Z5KGR4_FISSO6.000e-2540.48Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S3DVU2_9STRA1.170e-2441.48Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S3PUB1_9STRA2.320e-2441.22Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A6T9ZNM7_9STRA1.030e-2342.75Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
L1IIK2_GUITC1.550e-2336.97Uncharacterized protein n=1 Tax=Guillardia theta (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6345contigP-wetherbeei_contig6345:1245..2362 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FT52
Model size402
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.79e-27
EggNOG OGs2C200@1|root,2S7SE@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_003560.1
Cds size381
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.2898006-UTR-P-wetherbeei_contig6345:1244..12651683186906.2898006-UTR-P-wetherbeei_contig6345:1244..1265Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6345 1245..1265 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186906.299724-CDS-P-wetherbeei_contig6345:1265..13811683186906.299724-CDS-P-wetherbeei_contig6345:1265..1381Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6345 1266..1381 +
1683186906.3085444-CDS-P-wetherbeei_contig6345:1641..17291683186906.3085444-CDS-P-wetherbeei_contig6345:1641..1729Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6345 1642..1729 +
1683186906.3185492-CDS-P-wetherbeei_contig6345:2185..23621683186906.3185492-CDS-P-wetherbeei_contig6345:2185..2362Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6345 2186..2362 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6345.1.1prot_P-wetherbeei_contig6345.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6345 1266..2362 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6345.1.1

>prot_P-wetherbeei_contig6345.1.1 ID=prot_P-wetherbeei_contig6345.1.1|Name=mRNA_P-wetherbeei_contig6345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MEMKRKGKPNVPINARGGYNNMRKMQEAMMQQKNAGNDGNPIFDIFVRTK
RANLWYPAASLAGDKNAKATVDAWLTGFVSGLYEDSLKRGIATSVNGNRQ
NLLDGVFRTYPELRKEKEGLEFGFKIR
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mRNA from alignment at P-wetherbeei_contig6345:1245..2362+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6345.1.1 ID=mRNA_P-wetherbeei_contig6345.1.1|Name=mRNA_P-wetherbeei_contig6345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1118bp|location=Sequence derived from alignment at P-wetherbeei_contig6345:1245..2362+ (Phaeothamnion wetherbeei SAG_119_79)
TCTCGAAGTGGCGCGCGAAGTATGGAGATGAAGCGAAAGGGCAAGCCAAA TGTGCCCATTAACGCACGAGGAGGCTACAATAACATGCGCAAGATGCAAG AGGCGATGATGCAGCAGAAGAACGCCGGAAATGACGGGTGAGGGCAAACA AAAACGTGTTGCGGTAGGCATCCATCTTTTGTCGGCTGCCGTAGAGGCTT ATGAGTCACGTCGTGTTGGTTCGTCTATCGTGTTGCGCTGTCGCCTCTTT ACACACACTCTCTCGCCGGCGTTACGCTCTTTTCACGAAAAAGAGAAAAG TTGTCCCTACTTGCCGGCGTCGGTTTCTGCTTCCTGTTTGCCCCTCATTC CATAACTGCGTTTCCTCATTCCATCGTCCCCTCTCTTTTTTTTGCAGGAA TCCGATCTTTGACATTTTTGTGCGCACCAAGCGGGCCAATCTCTGGTACC CCGCGGCGTCGTTGGCGGGCGACAAGAACGCGAAGGTGAGGCCCCTTGCT TTTGCGTTCTGACAACAGCAACGTCGGCTCCTTTCTAGTTGCAGACTGCT TGCGTGCGCCCTAAAGTCGTAGCAACGGCGCTCAATATCATTAACTTACA CTTAAATCGGAAACTAAAACCCAATTTGTTGAAAACTAGAGCGAGACGGC TCGTTGCAGAGCTGGCATTGTGTTGTTGGGAGGTGCCGATGCCGGGAAAC CGCTAGTCGCACCTTGTGGTTTCCGCACGGGTTACCCGCTCACTCGCTTA ATCGCTTTCTTGCCTTCTTTGGTTCTGCCAATGGAACCTCTGAATGCCAC TCCACAACTGGGATGCATCGGCTGCTATGGCGGCTGCGTGGACCACGGAA CGGCTTCGAACGGCGTTCCTTGAACGACGCGAAACTGCTGCGAAACTTCC GGTGAAATGGCCTTGAAACGAGGACATCGCCGCTCCGGCAGGCGACGGTG GATGCGTGGCTGACGGGGTTCGTGTCCGGGCTCTACGAAGACTCGCTGAA GCGCGGCATCGCCACGAGCGTCAACGGCAACCGGCAGAACCTGCTGGACG GCGTGTTCCGGACGTACCCCGAGCTGCGAAAGGAGAAGGAAGGGCTCGAG TTCGGCTTCAAGATCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6345:1245..2362+

>mRNA_P-wetherbeei_contig6345.1.1 ID=mRNA_P-wetherbeei_contig6345.1.1|Name=mRNA_P-wetherbeei_contig6345.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig6345:1245..2362+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGATGAAGCGAAAGGGCAAGCCAAATGTGCCCATTAACGCACGAGG
AGGCTACAATAACATGCGCAAGATGCAAGAGGCGATGATGCAGCAGAAGA
ACGCCGGAAATGACGGGAATCCGATCTTTGACATTTTTGTGCGCACCAAG
CGGGCCAATCTCTGGTACCCCGCGGCGTCGTTGGCGGGCGACAAGAACGC
GAAGGCGACGGTGGATGCGTGGCTGACGGGGTTCGTGTCCGGGCTCTACG
AAGACTCGCTGAAGCGCGGCATCGCCACGAGCGTCAACGGCAACCGGCAG
AACCTGCTGGACGGCGTGTTCCGGACGTACCCCGAGCTGCGAAAGGAGAA
GGAAGGGCTCGAGTTCGGCTTCAAGATCCGG
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