mRNA_P-wetherbeei_contig633.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig633.3.1
Unique NamemRNA_P-wetherbeei_contig633.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig633.3.1 vs. uniprot
Match: A0A6H5L4R7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R7_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 7.400e-53
Identity = 123/299 (41.14%), Postives = 160/299 (53.51%), Query Frame = 1
Query:    1 AVSHRRSVARYWKRVDETIAAGAPSAAGACSRSTLVRLPAERIDGIYGRLAFPQRSRSFRGVSLRRKAAMVAAASASAARTVTTAAHVATVSAETRMTAAAMDMAQRVAGMLAEVETDFVRAVARAMVHYELRDPQAARTLGIDPAHLMAGPAWYAEDTYRRPEWRLLRQTGVSRRRRHRAAAALARKLCCADALMLELERLWHEGSAGGD--TAAIAGAVAHVEAGRNGXXXXXXXXXXADCTYATALLTDVATAHFRRTLPMSLDNFCAHLERRANEVREALREFWLGDAAGVIGRH 891
            A   + S+ RYW  V++ +  G+ +A GA ++S L+ LP ER+DGI  RLAF  R     G+ L    A   AA                                 V  ML +V+     +VAR +V YEL+DP+  + LGI+  HL AGP WY    Y  PEWR+LRQTGVSR R  R+A  L RKLC  + +M+ LE+LWH G   GD  TA   G+                    +D  YA  L TDV TA F  TLPMSLD+FC+H+ERRANE REA++EFWL DAAG++G++
Sbjct:  472 AERQKESIDRYWVNVEDRMLNGSSNALGAGAKSPLLELPPERVDGITSRLAFELRF--IPGIELGAYQAYAEAA---------------------------------VNSMLEDVQVGHSVSVARTVVDYELKDPERRKALGIEREHLTAGPRWYQCQEYLIPEWRVLRQTGVSRARVRRSALLLKRKLCSVETVMVGLEKLWHSGVVPGDWDTATFGGS--------------------SDVVYADVLFTDVTTATFWSTLPMSLDSFCSHMERRANECREAMQEFWLSDAAGLVGQY 715          
BLAST of mRNA_P-wetherbeei_contig633.3.1 vs. uniprot
Match: D7FT69_ECTSI (Dynein heavy chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT69_ECTSI)

HSP 1 Score: 176 bits (447), Expect = 4.630e-46
Identity = 95/189 (50.26%), Postives = 120/189 (63.49%), Query Frame = 1
Query:  331 MLAEVETDFVRAVARAMVHYELRDPQAARTLGIDPAHLMAGPAWYAEDTYRRPEWRLLRQTGVSRRRRHRAAAALARKLCCADALMLELERLWHEGSAGGD--TAAIAGAVAHVEAGRNGXXXXXXXXXXADCTYATALLTDVATAHFRRTLPMSLDNFCAHLERRANEVREALREFWLGDAAGVIGRH 891
            ML +V+     +VARA+V YEL+DP+  + LGI+  HL AGP WY    Y  PEWR+LRQTGVSR R  R+A  L RKLC  + +M+ LE+LWH G   GD  TAA  G+                    +D  YA  L TDV TA F  TLPMSLD+FC+H+ERRANE REA++EFWL DAAG++G++
Sbjct:  426 MLEDVQVGHSVSVARAVVDYELKDPERRKALGIERGHLTAGPRWYQCQEYLIPEWRVLRQTGVSRARVRRSALLLKRKLCSVETVMVGLEKLWHSGVVPGDWDTAAFGGS--------------------SDVVYADVLFTDVTTATFWSTLPMSLDSFCSHMERRANECREAMQEFWLSDAAGLVGQY 594          
BLAST of mRNA_P-wetherbeei_contig633.3.1 vs. uniprot
Match: A0A2E0V6B2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Verrucomicrobiaceae bacterium TaxID=2026800 RepID=A0A2E0V6B2_9BACT)

HSP 1 Score: 139 bits (351), Expect = 2.110e-33
Identity = 110/302 (36.42%), Postives = 151/302 (50.00%), Query Frame = 1
Query:    1 AVSHRRSVARYWKRVDETIAAGAPSAAGACSRSTLVRLPAERIDGIYGRLAFPQRSRSFRGVSLRRKAAMVAAASASAARTVTTAAHVATVSAETR-MTAAAMDMAQRVAG-MLAEVETDFVRAVARAMVHYELRDPQAARTLGIDPAHLMAGPAWYAEDTYRRPEWRLLRQTGVSRRRRHRAAAALARKLCCADALMLELERLWHEGSAGGDTAAIAGAVAHVEAGRNGXXXXXXXXXXADCTYATALLTDVATAHFRRTLPMSLDNFCAHLERRANEVREALREFWLGDAAGVIGRHTAE 900
            A+ ++ +V  YW RV      GA  AAGA +R  +  LP   + GI GR+A P         SL R+ A V  A  S + TVT+ A      AE    +  A++ A+ VA   LAE +  F   VAR+MV YELRD    R   IDP+ L A P W+  D YR  +W +LR TGVSRR    A      +L   D +M +L   W       + A+ A +++   + +                ++  LLTDVAT  FR+ LP+SLD+FC H+E RAN VR AL E W+   A ++ +H  E
Sbjct:  214 ALQYQTTVENYWGRVRTLTQRGAAHAAGAGTRRPIANLPDSWLGGIAGRVAPP--------ASLLRERARVLKARKSVSDTVTSEAVDQLADAEPEPWSVQAVERAEAVADDALAETKLAFSDGVARSMVDYELRDSDVCRMHAIDPSRLRASPKWWTCDEYRTNKWVILRDTGVSRRSVCVARHHAVDRLRTVDRVMYDLHEAWLLPRRARERASAARSISTASSSQ-----------PTKPPFSRVLLTDVATDAFRKRLPLSLDDFCKHVEGRANAVRNALSEEWIPACASLLAQHLDE 496          
BLAST of mRNA_P-wetherbeei_contig633.3.1 vs. uniprot
Match: A0A6S8VT28_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8VT28_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.670e-31
Identity = 109/302 (36.09%), Postives = 149/302 (49.34%), Query Frame = 1
Query:    1 AVSHRRSVARYWKRVDETIAAGAPSAAGACSRSTLVRLPAERIDGIYGRLAFPQRSRSFRGVSLRRKAAMVAAASASAARTVTTAAHVATVSAETR-MTAAAMDMAQRVAG-MLAEVETDFVRAVARAMVHYELRDPQAARTLGIDPAHLMAGPAWYAEDTYRRPEWRLLRQTGVSRRRRHRAAAALARKLCCADALMLELERLWHEGSAGGDTAAIAGAVAHVEAGRNGXXXXXXXXXXADCTYATALLTDVATAHFRRTLPMSLDNFCAHLERRANEVREALREFWLGDAAGVIGRHTAE 900
            A  ++  V  YW RV      GA  AAGA +R  +  LP   + GI GR+A P         SL ++ A V  A    + TVT+ A  A   AE    +  A++ A+ VA   LAE +  F   VAR+MV YELRD    +   IDP+ L A P W+  D YR  +W +LR TGVSRR  H A      +L   D +M +L   W       + A+ A +++   + +                ++  LLTDVAT  FR+ LPMSLD+FC H++ RAN VR AL E W+   A ++  H  E
Sbjct:  314 AEKYQVCVENYWGRVRTLTQRGAAHAAGAGTRRPIANLPDSWLGGIAGRVAPP--------ASLLKERARVLKAR-KVSDTVTSDAVDALADAEPEPWSVQAVERAEAVADDALAETKLAFSDGVARSMVEYELRDGDVCQMHAIDPSRLKAAPKWWTSDFYRTNKWVVLRDTGVSRRSVHVAKHHAVDRLRIVDRVMYDLHEAWLLPRRARERASAARSISTSVSSQ-----------PTKPPFSRVLLTDVATDQFRKRLPMSLDDFCKHVDGRANAVRNALSEEWVPACASLLAAHLDE 595          
BLAST of mRNA_P-wetherbeei_contig633.3.1 vs. uniprot
Match: A0A7S3ZZ40_9STRA (Hypothetical protein n=9 Tax=cellular organisms TaxID=131567 RepID=A0A7S3ZZ40_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.730e-31
Identity = 109/302 (36.09%), Postives = 149/302 (49.34%), Query Frame = 1
Query:    1 AVSHRRSVARYWKRVDETIAAGAPSAAGACSRSTLVRLPAERIDGIYGRLAFPQRSRSFRGVSLRRKAAMVAAASASAARTVTTAAHVATVSAETR-MTAAAMDMAQRVAG-MLAEVETDFVRAVARAMVHYELRDPQAARTLGIDPAHLMAGPAWYAEDTYRRPEWRLLRQTGVSRRRRHRAAAALARKLCCADALMLELERLWHEGSAGGDTAAIAGAVAHVEAGRNGXXXXXXXXXXADCTYATALLTDVATAHFRRTLPMSLDNFCAHLERRANEVREALREFWLGDAAGVIGRHTAE 900
            A  ++  V  YW RV      GA  AAGA +R  +  LP   + GI GR+A P         SL ++ A V  A    + TVT+ A  A   AE    +  A++ A+ VA   LAE +  F   VAR+MV YELRD    +   IDP+ L A P W+  D YR  +W +LR TGVSRR  H A      +L   D +M +L   W       + A+ A +++   + +                ++  LLTDVAT  FR+ LPMSLD+FC H++ RAN VR AL E W+   A ++  H  E
Sbjct:  314 AEKYQVCVENYWGRVRTLTQRGAAHAAGAGTRRPIANLPDSWLGGIAGRVAPP--------ASLLKERARVLKAR-KVSDTVTSDAVDALADAEPEPWSVQAVERAEAVADDALAETKLAFSDGVARSMVEYELRDGDVCQMHAIDPSRLKAAPKWWTSDFYRTNKWVVLRDTGVSRRSVHVAKHHAVDRLRIVDRVMYDLHEAWLLPRRARERASAARSISTSVSSQ-----------PTKPPFSRVLLTDVATDQFRKRLPMSLDDFCKHVDGRANAVRNALSEEWVPACASLLAAHLDE 595          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig633.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L4R7_9PHAE7.400e-5341.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FT69_ECTSI4.630e-4650.26Dynein heavy chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A2E0V6B2_9BACT2.110e-3336.42Uncharacterized protein (Fragment) n=1 Tax=Verruco... [more]
A0A6S8VT28_9STRA3.670e-3136.09Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZZ40_9STRA3.730e-3136.09Hypothetical protein n=9 Tax=cellular organisms Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig633contigP-wetherbeei_contig633:6811..8704 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FT69
PFAMsAAA_6,AAA_7,AAA_8,AAA_9,DHC_N2,DUF4496,Dynein_heavy,MT
Model size900
Max annot lvl2759|Eukaryota
KEGG koko:K10408
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
Exons6
Evalue7.58e-47
EggNOG OGsCOG5245@1|root,KOG3595@2759|Eukaryota
Descriptiondynein light chain binding
Cds size900
COG categoryZ
BRITEko00000,ko00001,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig633.3.1prot_P-wetherbeei_contig633.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig633 6811..8704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186905.3782685-CDS-P-wetherbeei_contig633:6810..68791683186905.3782685-CDS-P-wetherbeei_contig633:6810..6879Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig633 6811..6879 -
1683186905.388217-CDS-P-wetherbeei_contig633:7190..74041683186905.388217-CDS-P-wetherbeei_contig633:7190..7404Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig633 7191..7404 -
1683186905.3964462-CDS-P-wetherbeei_contig633:7569..77781683186905.3964462-CDS-P-wetherbeei_contig633:7569..7778Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig633 7570..7778 -
1683186905.4051647-CDS-P-wetherbeei_contig633:8203..82961683186905.4051647-CDS-P-wetherbeei_contig633:8203..8296Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig633 8204..8296 -
1683186905.415826-CDS-P-wetherbeei_contig633:8346..84771683186905.415826-CDS-P-wetherbeei_contig633:8346..8477Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig633 8347..8477 -
1683186905.4240096-CDS-P-wetherbeei_contig633:8520..87041683186905.4240096-CDS-P-wetherbeei_contig633:8520..8704Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig633 8521..8704 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig633.3.1

>prot_P-wetherbeei_contig633.3.1 ID=prot_P-wetherbeei_contig633.3.1|Name=mRNA_P-wetherbeei_contig633.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=300bp
AVSHRRSVARYWKRVDETIAAGAPSAAGACSRSTLVRLPAERIDGIYGRL
AFPQRSRSFRGVSLRRKAAMVAAASASAARTVTTAAHVATVSAETRMTAA
AMDMAQRVAGMLAEVETDFVRAVARAMVHYELRDPQAARTLGIDPAHLMA
GPAWYAEDTYRRPEWRLLRQTGVSRRRRHRAAAALARKLCCADALMLELE
RLWHEGSAGGDTAAIAGAVAHVEAGRNGGGGGCGGGGGADCTYATALLTD
VATAHFRRTLPMSLDNFCAHLERRANEVREALREFWLGDAAGVIGRHTAE
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mRNA from alignment at P-wetherbeei_contig633:6811..8704-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig633.3.1 ID=mRNA_P-wetherbeei_contig633.3.1|Name=mRNA_P-wetherbeei_contig633.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1894bp|location=Sequence derived from alignment at P-wetherbeei_contig633:6811..8704- (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGTCCCATCGCCGCTCTGTGGCGCGCTACTGGAAGCGGGTGGACGA AACAATCGCTGCGGGCGCCCCGAGCGCTGCCGGAGCCTGTTCCCGCTCCA CCCTGGTGCGGCTGCCGGCGGAGCGCATTGACGGCATCTACGGGCGGCTT GCCTTTCCGCAGCGCTCTCGCTCCTTTCGCGGCGGTAACGGCGGCGGTTA CAACAGCGGTTTTGACGGCAGCGACAGTGTCCTTGAGGAGGAAGGCAGCG ATGGTGGCGGCCGCTTCGGCTTCGGCGGCGAGGACGGTTACAACGGCGGC TCATGTGGCGACCGTTTCAGCGGAGACGAGAATGACGGCGGCGGCGATGG ATATGGCGGTTACAACGGCGGCAGCGGCGAAGGGGCGGGGCGGGACGGGC AGCTGGAGCAGCGTGTGGCGGGGATGCTGGCAGAGGTGGAGACAGACTTT GTACGCGCCGTCGCGCGGGCGATGGTGCACTATGAGCTCAGGGACCCGCA GGTTAGTAAGATTGTGGAGAGAAGGCAGTGGAAATCTTGCTCGCTGCTCG CTGCTCACCGAAGTGTTGTTGGATGCCATCTATATCTTTTGGCGGTCGCT GGCTGGCCGCTAGAACCTTTTGTCGGGAATGCACCACCCTCCCTTGCACA GCATTGCTCAGCTTGCGCCCTCGAAGATTGTGCCCAGGACCACTTCCTAA CAGCTTCTTATCATATCCCCAATCCAAAGCCGTTTTGGACTTTGAATGAT TGCAGCTGTCGCTTTGAGCCGGTGCTTTCGCTTGGACCGTGTATACCAGC GTTTCTCCTACTACCATGCCTCTATTCATGCCGCGGCTTCCCCTTGGTCG CTCGAGTCCCGCCACTTTACCGCGTTTTTCTTTTTCAATCTGTCATCCGC CAATCCGTCGACTGCTCGAATCAAAGGCCGCGCGAACGCTGGGCATCGAC CCGGCGCACCTGATGGCCGGCCCGGCCTGGTACGCCGAGGACACCTACCG CCGCCCTGAGTGGCGGCTGTTGCGGCAGACCGGGGTCAGCCGCCGCCGCC GCCACCGCGCCGCCGCCGCGCTCGCCCGCAAGCTGTGCTGCGCCGATGCT TTGATGCTCGAGCTCGAGCGGCTCTGGCACGAGGGGTTCATCCCCGCCGA CTGGGATGCCAACACCTCCGGCGGCGGCAGTGTCACGGGCGGCGGCGGCG GCGGCAGCAGGAATGGCAGCGGCGGCGGCGGGAACGGCGGCGGCGGCGGC GGCGGGAACGGCGGCGGCGACGGAAGCGGGAGCCAAGGCGGCCGCCGGAG CAGCGCAGGCGGCGACACGGCGGCAATCGCCGGAGCCGTCGCGCATGTAG AGGCGGGCCGCAACGGCGGCGGCGGCGGTTGCGGCGGCGGCGGTGGCGCT GACTGCACGTATGCGACGGCGCTGCTGACGGACGTGGCGACGGCGCACTT CCGGCGGACGCTGCCGATGTCGCTCGACAATTTCTGCGCTCATCTCGAGC GGCGCGCCAACGAGGTGAGTTCCAAAGCTGCACTTTGCCACAGATTCCCC CTCTTTTGCTTTGGAAGCCTTTCCTTTTGGTCTTCAGTAAGGCGTCAGGA TTCGAACTGTGCCATCGAACCCAAACTTTCAGGACGAATATCATGCACGC TTTCATTAACTTCTAACGACATCCATTTTCAGTCTTCTTGCCGCGCATGC CTTGGTTCTTGTTGTTCTTGTTGTTTTTTGTGCGCCGTCTTTTATGCTTC CTCGTCTCCGCTCCGATTACCTTTGCTTTAACTTCTTTTTGATGCGTGCC CCTGACGCCACTGCCGCTGTTGCAGGTCCGCGAGGCCCTGCGAGAGTTCT GGCTGGGCGACGCCGCAGGCGTCATCGGGCGCCACACGGCAGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig633:6811..8704-

>mRNA_P-wetherbeei_contig633.3.1 ID=mRNA_P-wetherbeei_contig633.3.1|Name=mRNA_P-wetherbeei_contig633.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=900bp|location=Sequence derived from alignment at P-wetherbeei_contig633:6811..8704- (Phaeothamnion wetherbeei SAG_119_79)
GCGGTGTCCCATCGCCGCTCTGTGGCGCGCTACTGGAAGCGGGTGGACGA
AACAATCGCTGCGGGCGCCCCGAGCGCTGCCGGAGCCTGTTCCCGCTCCA
CCCTGGTGCGGCTGCCGGCGGAGCGCATTGACGGCATCTACGGGCGGCTT
GCCTTTCCGCAGCGCTCTCGCTCCTTTCGCGGCGTGTCCTTGAGGAGGAA
GGCAGCGATGGTGGCGGCCGCTTCGGCTTCGGCGGCGAGGACGGTTACAA
CGGCGGCTCATGTGGCGACCGTTTCAGCGGAGACGAGAATGACGGCGGCG
GCGATGGATATGGCGCAGCGTGTGGCGGGGATGCTGGCAGAGGTGGAGAC
AGACTTTGTACGCGCCGTCGCGCGGGCGATGGTGCACTATGAGCTCAGGG
ACCCGCAGGCCGCGCGAACGCTGGGCATCGACCCGGCGCACCTGATGGCC
GGCCCGGCCTGGTACGCCGAGGACACCTACCGCCGCCCTGAGTGGCGGCT
GTTGCGGCAGACCGGGGTCAGCCGCCGCCGCCGCCACCGCGCCGCCGCCG
CGCTCGCCCGCAAGCTGTGCTGCGCCGATGCTTTGATGCTCGAGCTCGAG
CGGCTCTGGCACGAGGGCAGCGCAGGCGGCGACACGGCGGCAATCGCCGG
AGCCGTCGCGCATGTAGAGGCGGGCCGCAACGGCGGCGGCGGCGGTTGCG
GCGGCGGCGGTGGCGCTGACTGCACGTATGCGACGGCGCTGCTGACGGAC
GTGGCGACGGCGCACTTCCGGCGGACGCTGCCGATGTCGCTCGACAATTT
CTGCGCTCATCTCGAGCGGCGCGCCAACGAGGTCCGCGAGGCCCTGCGAG
AGTTCTGGCTGGGCGACGCCGCAGGCGTCATCGGGCGCCACACGGCAGAG
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