mRNA_P-wetherbeei_contig6303.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6303.1.1
Unique NamemRNA_P-wetherbeei_contig6303.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6303.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6303contigP-wetherbeei_contig6303:4..3456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size3184
Hectar predicted targeting categoryother localisation
Exons2
Cds size3180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186903.5187836-CDS-P-wetherbeei_contig6303:3..9381683186903.5187836-CDS-P-wetherbeei_contig6303:3..938Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6303 4..938 +
1683186903.5305507-CDS-P-wetherbeei_contig6303:1209..34541683186903.5305507-CDS-P-wetherbeei_contig6303:1209..3454Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6303 1210..3454 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6303.1.1prot_P-wetherbeei_contig6303.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6303 4..3454 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6303.1.1

>prot_P-wetherbeei_contig6303.1.1 ID=prot_P-wetherbeei_contig6303.1.1|Name=mRNA_P-wetherbeei_contig6303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1060bp
DAGAINPAAAPAATVKASAAAPPAPAAPSGAGRAASPLPGVAAAPPDAAA
STPADAAAAAEAGTEAKTEAKTEATADGSALHPATGPAIAGTGDGGDVSE
PTGCRFLRVYVDGEGEVWTRVGPWNDLARTAAGTEAEPAAELAARTIVEV
RPDALSCQAALLEATRALAAAKVRALAVDVDAALAVAGLTQHACAIIAAG
GCYLRLLAASATVSDIADEPLLPLNGGQFDPSGRWGISGSGGSSSSHENG
STAFGGMADGKPKRPPAKAAAATAARSPTALRWPAFADVSVDVRKGRFVV
RGCNHYAPATKGALAVLQETFNLAPLEVAVEAAGGIAFLGDSFATSRRRR
QHAALRESVRLLLLEETEALLRSRFGLTPQRRWQAVLGRGGGSTGAAGSD
GGGACTYVSIFECYERAEAARSPGAQAAAGAAASDALPSGGLASESAAKS
SPPLQGQRAAPPPSADDTTSSGRETAATAAAGSAGFHWTTLAAGTASAAV
AGSEQLRFIVEIGVSEDLGLRSTLLVTSEPEASASIRPAVVGWRRIDVGE
FCATVGRSPPVAMAATAAGAAAAAGGAAVSAAGMSAMELEEGIAAALVAG
EKRRLNGDVARPIFGGPALNGTANREFPWADECFQEPNGANLEPGAKRLR
QEASSPPLAHNGRGPRFATVVPASGGGGGGSGVGDGSMGAPVTAEALNLI
LDAANKLVLYARLARAFQHGCDVRGTGGEGSRLVSPVPPKAEYSYALPEW
VAATVPAAWRATPLCATAVATRHAAGAGLGGRHRGEAWDWRIALSSSSGL
GAMLWCPAAVQRAVAAAADVYGNGTGQRAALWSALRTMRLSAPGANGTRE
LRLTLAPPATLAGAATWLTEGLAAAAAGMAPLVAQALALVAAGPAVPAMP
APEEAAGRFFVAAAGPLYVLLIYRTYKPAGYGDGTAVILTDAVAVVRGQS
SRTAPVGMPVPPPSAAAVGASTAEGSAAPTAEAIESTAASLMSAAVTAAK
AGMANAAAAHNGTDAAAAAVVAAAAAVAADAPAAAVVPKGSAPTPDVLAV
AGEMVGAKDT
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mRNA from alignment at P-wetherbeei_contig6303:4..3456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6303.1.1 ID=mRNA_P-wetherbeei_contig6303.1.1|Name=mRNA_P-wetherbeei_contig6303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3453bp|location=Sequence derived from alignment at P-wetherbeei_contig6303:4..3456+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCCGGGGCCATCAATCCGGCGGCAGCTCCCGCGGCAACAGTGAAAGC
TTCGGCGGCTGCGCCGCCGGCGCCGGCGGCGCCTTCGGGAGCCGGACGGG
CGGCCTCGCCGCTGCCTGGGGTAGCCGCGGCACCACCTGATGCTGCCGCG
TCTACCCCAGCAGACGCTGCAGCGGCGGCAGAGGCCGGGACGGAGGCCAA
GACGGAGGCCAAGACGGAGGCCACTGCCGATGGATCGGCGTTGCACCCGG
CAACGGGGCCAGCGATTGCTGGCACCGGCGACGGCGGCGACGTGTCGGAG
CCTACGGGATGCCGCTTCCTGCGGGTGTACGTGGATGGCGAGGGAGAAGT
CTGGACTCGAGTCGGGCCTTGGAATGACCTCGCAAGAACCGCAGCCGGAA
CCGAAGCGGAGCCTGCGGCCGAACTGGCTGCCAGAACGATCGTTGAAGTG
CGGCCGGACGCCCTCAGCTGCCAGGCGGCACTGTTGGAGGCGACGCGGGC
GCTCGCCGCGGCAAAGGTGCGGGCGTTGGCCGTGGACGTCGATGCGGCGC
TAGCGGTAGCCGGGCTGACGCAGCACGCATGCGCAATTATTGCGGCCGGA
GGCTGCTATCTCAGGCTCCTTGCGGCGAGCGCGACGGTTTCCGACATCGC
AGATGAACCACTCTTGCCGCTGAACGGAGGCCAGTTTGATCCGTCCGGGC
GCTGGGGTATCAGCGGCAGCGGCGGTAGCAGCAGCAGCCACGAAAACGGA
TCGACTGCTTTTGGCGGGATGGCCGACGGAAAACCGAAGCGGCCGCCAGC
GAAGGCGGCGGCTGCGACAGCGGCGAGGTCACCGACGGCGCTGCGATGGC
CCGCCTTTGCCGACGTCAGCGTGGATGTGCGGAAAGGCCGGTTCGTCGTC
CGCGGCTGCAATCACTATGCGCCGGCTACGAAGGGGTAAGCGGATTGGAA
TCCCTGCTATTTTCTTCTTCGACTTGTGTGGCGGCCATGATATTTGTCGC
ACCCTCCTGATCTCATCGAGCGCGTCGCAGCACGCTCAACACGCTGCAAT
GCAGTGCAGGTGGAGGTTTTTTCAGTGGACATGGTTTCGTTGCGGTTGCT
CTCATGGTTAACATTTTATTCCACTCCCACCTGACCTTCCACGTTTCCCT
CTGGCTGCATCCCTCTTTTCATCTCTTGTCGATTTGCAAATTCGTGCTGC
GCGTAGAGCGCTGGCGGTGCTGCAAGAGACGTTCAATCTTGCGCCGCTGG
AGGTTGCCGTTGAGGCGGCGGGCGGCATCGCCTTCCTCGGGGACAGTTTC
GCCACCAGCCGGCGCCGCCGGCAGCACGCGGCGCTGCGTGAGTCCGTGCG
GCTCCTGTTACTGGAGGAGACAGAGGCGCTGCTCCGCTCCCGCTTCGGCT
TAACGCCGCAGCGCCGCTGGCAGGCGGTGTTGGGGCGTGGCGGCGGCAGC
ACCGGCGCTGCGGGGAGCGACGGAGGCGGCGCCTGCACCTACGTCTCCAT
TTTTGAATGCTACGAGCGCGCGGAGGCCGCCCGCTCGCCCGGGGCCCAAG
CGGCTGCCGGCGCTGCAGCCAGTGACGCGTTACCCAGTGGTGGGCTTGCA
TCCGAAAGCGCCGCAAAGTCATCGCCGCCGCTTCAGGGGCAGAGAGCCGC
TCCTCCACCGTCAGCGGACGACACGACGTCCAGCGGGCGGGAGACGGCGG
CGACGGCGGCGGCGGGGTCTGCCGGCTTTCACTGGACAACCCTGGCAGCC
GGCACGGCTTCGGCGGCAGTCGCCGGCTCCGAGCAGCTGCGGTTCATCGT
GGAGATCGGAGTGAGTGAGGACCTCGGGCTGCGATCGACGCTATTGGTTA
CGTCGGAGCCGGAGGCGTCGGCATCGATCCGCCCCGCCGTTGTCGGGTGG
CGCAGGATTGACGTCGGCGAGTTTTGTGCCACCGTCGGCCGCTCTCCGCC
AGTCGCCATGGCAGCGACGGCGGCCGGGGCCGCGGCGGCTGCCGGGGGGG
CGGCGGTGTCGGCGGCGGGTATGAGCGCGATGGAATTGGAGGAGGGCATC
GCAGCAGCATTGGTGGCGGGCGAGAAGCGGCGTTTGAATGGAGACGTCGC
AAGGCCGATTTTCGGAGGCCCGGCCCTCAACGGGACGGCCAACAGAGAGT
TTCCGTGGGCAGACGAATGTTTCCAGGAGCCAAACGGGGCAAATCTGGAG
CCGGGTGCCAAGCGCCTGCGGCAGGAGGCGAGCTCGCCGCCGCTCGCGCA
CAACGGCAGGGGCCCAAGATTTGCAACGGTCGTCCCTGCAAGCGGCGGTG
GCGGCGGCGGCAGCGGCGTTGGGGACGGTAGCATGGGCGCCCCAGTCACA
GCTGAAGCTCTCAACCTCATCCTGGACGCTGCGAATAAGCTCGTTCTGTA
CGCGCGACTGGCTCGCGCGTTTCAGCACGGCTGCGACGTTCGCGGCACGG
GCGGAGAGGGCAGTCGCCTGGTCTCTCCGGTTCCGCCGAAGGCCGAGTAT
TCCTACGCGCTACCCGAGTGGGTCGCAGCGACGGTGCCCGCGGCGTGGCG
GGCAACCCCGCTGTGCGCAACCGCTGTCGCGACGCGGCACGCTGCCGGCG
CCGGTCTCGGAGGCAGGCACCGGGGCGAAGCGTGGGACTGGCGAATTGCG
CTGTCGTCTTCGTCAGGCCTCGGCGCCATGCTTTGGTGTCCCGCCGCCGT
GCAGCGCGCTGTCGCCGCCGCCGCAGATGTTTACGGCAATGGCACCGGGC
AGCGGGCGGCTCTCTGGTCAGCCCTGCGGACGATGCGCCTGTCAGCACCA
GGCGCCAATGGGACGCGGGAGCTGCGGCTCACGCTGGCGCCGCCGGCGAC
GCTGGCGGGCGCAGCGACGTGGTTGACGGAGGGGCTGGCGGCGGCGGCAG
CTGGCATGGCGCCGCTGGTGGCGCAGGCGCTCGCACTGGTGGCGGCGGGA
CCGGCGGTGCCAGCGATGCCTGCCCCTGAGGAGGCGGCGGGGCGTTTCTT
CGTCGCGGCAGCAGGCCCGCTGTACGTACTGCTAATATACCGCACCTACA
AGCCTGCCGGTTACGGCGACGGCACCGCTGTCATCCTCACGGATGCCGTC
GCCGTCGTCCGTGGACAGAGCTCTCGGACCGCGCCGGTGGGAATGCCCGT
GCCACCGCCGTCGGCGGCGGCTGTAGGCGCTTCCACGGCCGAGGGATCGG
CCGCACCGACCGCGGAGGCCATCGAGTCCACCGCGGCGTCGCTAATGTCG
GCGGCGGTGACTGCGGCGAAGGCCGGTATGGCAAACGCTGCGGCAGCTCA
CAATGGGACCGACGCGGCGGCTGCCGCGGTTGTTGCTGCTGCTGCTGCGG
TGGCTGCTGACGCGCCCGCGGCGGCGGTCGTGCCAAAGGGGTCAGCACCG
ACGCCAGACGTCCTTGCAGTGGCCGGAGAAATGGTGGGGGCCAAGGACAC
GGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6303:4..3456+

>mRNA_P-wetherbeei_contig6303.1.1 ID=mRNA_P-wetherbeei_contig6303.1.1|Name=mRNA_P-wetherbeei_contig6303.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3180bp|location=Sequence derived from alignment at P-wetherbeei_contig6303:4..3456+ (Phaeothamnion wetherbeei SAG_119_79)
GACGCCGGGGCCATCAATCCGGCGGCAGCTCCCGCGGCAACAGTGAAAGC
TTCGGCGGCTGCGCCGCCGGCGCCGGCGGCGCCTTCGGGAGCCGGACGGG
CGGCCTCGCCGCTGCCTGGGGTAGCCGCGGCACCACCTGATGCTGCCGCG
TCTACCCCAGCAGACGCTGCAGCGGCGGCAGAGGCCGGGACGGAGGCCAA
GACGGAGGCCAAGACGGAGGCCACTGCCGATGGATCGGCGTTGCACCCGG
CAACGGGGCCAGCGATTGCTGGCACCGGCGACGGCGGCGACGTGTCGGAG
CCTACGGGATGCCGCTTCCTGCGGGTGTACGTGGATGGCGAGGGAGAAGT
CTGGACTCGAGTCGGGCCTTGGAATGACCTCGCAAGAACCGCAGCCGGAA
CCGAAGCGGAGCCTGCGGCCGAACTGGCTGCCAGAACGATCGTTGAAGTG
CGGCCGGACGCCCTCAGCTGCCAGGCGGCACTGTTGGAGGCGACGCGGGC
GCTCGCCGCGGCAAAGGTGCGGGCGTTGGCCGTGGACGTCGATGCGGCGC
TAGCGGTAGCCGGGCTGACGCAGCACGCATGCGCAATTATTGCGGCCGGA
GGCTGCTATCTCAGGCTCCTTGCGGCGAGCGCGACGGTTTCCGACATCGC
AGATGAACCACTCTTGCCGCTGAACGGAGGCCAGTTTGATCCGTCCGGGC
GCTGGGGTATCAGCGGCAGCGGCGGTAGCAGCAGCAGCCACGAAAACGGA
TCGACTGCTTTTGGCGGGATGGCCGACGGAAAACCGAAGCGGCCGCCAGC
GAAGGCGGCGGCTGCGACAGCGGCGAGGTCACCGACGGCGCTGCGATGGC
CCGCCTTTGCCGACGTCAGCGTGGATGTGCGGAAAGGCCGGTTCGTCGTC
CGCGGCTGCAATCACTATGCGCCGGCTACGAAGGGAGCGCTGGCGGTGCT
GCAAGAGACGTTCAATCTTGCGCCGCTGGAGGTTGCCGTTGAGGCGGCGG
GCGGCATCGCCTTCCTCGGGGACAGTTTCGCCACCAGCCGGCGCCGCCGG
CAGCACGCGGCGCTGCGTGAGTCCGTGCGGCTCCTGTTACTGGAGGAGAC
AGAGGCGCTGCTCCGCTCCCGCTTCGGCTTAACGCCGCAGCGCCGCTGGC
AGGCGGTGTTGGGGCGTGGCGGCGGCAGCACCGGCGCTGCGGGGAGCGAC
GGAGGCGGCGCCTGCACCTACGTCTCCATTTTTGAATGCTACGAGCGCGC
GGAGGCCGCCCGCTCGCCCGGGGCCCAAGCGGCTGCCGGCGCTGCAGCCA
GTGACGCGTTACCCAGTGGTGGGCTTGCATCCGAAAGCGCCGCAAAGTCA
TCGCCGCCGCTTCAGGGGCAGAGAGCCGCTCCTCCACCGTCAGCGGACGA
CACGACGTCCAGCGGGCGGGAGACGGCGGCGACGGCGGCGGCGGGGTCTG
CCGGCTTTCACTGGACAACCCTGGCAGCCGGCACGGCTTCGGCGGCAGTC
GCCGGCTCCGAGCAGCTGCGGTTCATCGTGGAGATCGGAGTGAGTGAGGA
CCTCGGGCTGCGATCGACGCTATTGGTTACGTCGGAGCCGGAGGCGTCGG
CATCGATCCGCCCCGCCGTTGTCGGGTGGCGCAGGATTGACGTCGGCGAG
TTTTGTGCCACCGTCGGCCGCTCTCCGCCAGTCGCCATGGCAGCGACGGC
GGCCGGGGCCGCGGCGGCTGCCGGGGGGGCGGCGGTGTCGGCGGCGGGTA
TGAGCGCGATGGAATTGGAGGAGGGCATCGCAGCAGCATTGGTGGCGGGC
GAGAAGCGGCGTTTGAATGGAGACGTCGCAAGGCCGATTTTCGGAGGCCC
GGCCCTCAACGGGACGGCCAACAGAGAGTTTCCGTGGGCAGACGAATGTT
TCCAGGAGCCAAACGGGGCAAATCTGGAGCCGGGTGCCAAGCGCCTGCGG
CAGGAGGCGAGCTCGCCGCCGCTCGCGCACAACGGCAGGGGCCCAAGATT
TGCAACGGTCGTCCCTGCAAGCGGCGGTGGCGGCGGCGGCAGCGGCGTTG
GGGACGGTAGCATGGGCGCCCCAGTCACAGCTGAAGCTCTCAACCTCATC
CTGGACGCTGCGAATAAGCTCGTTCTGTACGCGCGACTGGCTCGCGCGTT
TCAGCACGGCTGCGACGTTCGCGGCACGGGCGGAGAGGGCAGTCGCCTGG
TCTCTCCGGTTCCGCCGAAGGCCGAGTATTCCTACGCGCTACCCGAGTGG
GTCGCAGCGACGGTGCCCGCGGCGTGGCGGGCAACCCCGCTGTGCGCAAC
CGCTGTCGCGACGCGGCACGCTGCCGGCGCCGGTCTCGGAGGCAGGCACC
GGGGCGAAGCGTGGGACTGGCGAATTGCGCTGTCGTCTTCGTCAGGCCTC
GGCGCCATGCTTTGGTGTCCCGCCGCCGTGCAGCGCGCTGTCGCCGCCGC
CGCAGATGTTTACGGCAATGGCACCGGGCAGCGGGCGGCTCTCTGGTCAG
CCCTGCGGACGATGCGCCTGTCAGCACCAGGCGCCAATGGGACGCGGGAG
CTGCGGCTCACGCTGGCGCCGCCGGCGACGCTGGCGGGCGCAGCGACGTG
GTTGACGGAGGGGCTGGCGGCGGCGGCAGCTGGCATGGCGCCGCTGGTGG
CGCAGGCGCTCGCACTGGTGGCGGCGGGACCGGCGGTGCCAGCGATGCCT
GCCCCTGAGGAGGCGGCGGGGCGTTTCTTCGTCGCGGCAGCAGGCCCGCT
GTACGTACTGCTAATATACCGCACCTACAAGCCTGCCGGTTACGGCGACG
GCACCGCTGTCATCCTCACGGATGCCGTCGCCGTCGTCCGTGGACAGAGC
TCTCGGACCGCGCCGGTGGGAATGCCCGTGCCACCGCCGTCGGCGGCGGC
TGTAGGCGCTTCCACGGCCGAGGGATCGGCCGCACCGACCGCGGAGGCCA
TCGAGTCCACCGCGGCGTCGCTAATGTCGGCGGCGGTGACTGCGGCGAAG
GCCGGTATGGCAAACGCTGCGGCAGCTCACAATGGGACCGACGCGGCGGC
TGCCGCGGTTGTTGCTGCTGCTGCTGCGGTGGCTGCTGACGCGCCCGCGG
CGGCGGTCGTGCCAAAGGGGTCAGCACCGACGCCAGACGTCCTTGCAGTG
GCCGGAGAAATGGTGGGGGCCAAGGACACG
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