mRNA_P-wetherbeei_contig6301.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6301.1.1
Unique NamemRNA_P-wetherbeei_contig6301.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: D7G3R9_ECTSI (Helicase_C_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R9_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 9.800e-16
Identity = 48/115 (41.74%), Postives = 69/115 (60.00%), Query Frame = 1
Query:    1 TFFEAAAVWMKGVGVDPLGIMTAKEASKILNQ-----VGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTIQGQSVVVSAGSPLQIDRD-GVKPGDVVSHQV 327
            TFFEA  VW+  VG+    ++   E +  ++Q     V RFLNR+LG+ I  Q+ LF YF  + E HVK+AKRDG Y+DGIR++ G S  VS    L +  + G+  G+V + +V
Sbjct:   18 TFFEAVLVWLGKVGI----VVEDDEVNGRIHQNVQGNVSRFLNRILGLRIVRQHVLFDYFHSVLEYHVKEAKRDGTYEDGIRSLTGASCSVSVMRALDLPEETGLAKGEVEAVKV 128          
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A0K0ELL9_STRER (Uncharacterized protein n=1 Tax=Strongyloides stercoralis TaxID=6248 RepID=A0A0K0ELL9_STRER)

HSP 1 Score: 69.7 bits (169), Expect = 1.550e-11
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 1
Query:    4 FFEAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTI 237
            FF     +++GVG+  +  +      +  N + +FLNRLLG+P+ AQN LF+YF H+ E  ++QAK DG YD GI  I
Sbjct: 1410 FFSDMRQYLEGVGILSVNKLGQYSVERDGNSIAKFLNRLLGLPVHAQNGLFEYFTHILEELIRQAKYDGTYDMGIMDI 1487          
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A7S4A0M8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A0M8_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.850e-10
Identity = 33/87 (37.93%), Postives = 55/87 (63.22%), Query Frame = 1
Query:    1 TFFEAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTIQGQSVVVS 261
            TF EA  +W++ VG D   +  AK  +   + VG FLNRLLG+ ++ QN LF+ F  L +  V++A+R+ ++D+ I+ I G+ V ++
Sbjct: 1053 TFEEACQMWLERVGFD--FVKAAKTGNTARSSVGTFLNRLLGLRLSQQNALFEVFAKLVDHAVRKARREKKFDEAIKEIDGRRVEIT 1137          
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A6P7S4D2_OCTVU (protein strawberry notch homolog 1 isoform X1 n=3 Tax=Octopus TaxID=6643 RepID=A0A6P7S4D2_OCTVU)

HSP 1 Score: 65.9 bits (159), Expect = 3.460e-10
Identity = 36/97 (37.11%), Postives = 59/97 (60.82%), Query Frame = 1
Query:   37 VGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTIQGQSVVVSAGSPLQIDRDGVKPGDVVSHQV 327
            V +DP+   T +   + L  VG+FLNR+LG+P+  QN +F YFI   +  ++ AKR+G+Y++G+  I   SV +  G P ++ +D  K G+ V+  V
Sbjct: 1005 VDMDPVKF-TVQVKKEDLGNVGKFLNRILGLPVMKQNLIFNYFIQCLDITIQNAKREGKYNEGLLDITASSVEM-VGEPKEVFKDLTK-GNTVTKLV 1098          
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A090L1K8_STRRB (Protein strawberry notch homolog 2 n=1 Tax=Strongyloides ratti TaxID=34506 RepID=A0A090L1K8_STRRB)

HSP 1 Score: 65.9 bits (159), Expect = 3.470e-10
Identity = 32/78 (41.03%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    4 FFEAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTI 237
            FF     +++GVG+  +  +      +  N + +FLNRLLG+P+ AQN LF+YF  + E  ++QAK DG YD GI  I
Sbjct: 1409 FFSDMRQYLEGVGILSVSKLGQYSVERDGNSIAKFLNRLLGLPVHAQNALFEYFTLILEELIRQAKYDGTYDMGIMDI 1486          
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A7R9B3U3_TIMSH (Hypothetical protein n=3 Tax=Timema TaxID=61471 RepID=A0A7R9B3U3_TIMSH)

HSP 1 Score: 65.9 bits (159), Expect = 3.480e-10
Identity = 34/77 (44.16%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    4 FFEAAAVWMKGVGV--DPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGI 228
            FFE  A  + GVG+  +  G+ T +   K  N + +FLNR+LG+P+  QN LFQYF    +A + QAK+ GR+D GI
Sbjct: 1380 FFEDVANALIGVGLINESEGVSTYRVLDKEFNNISKFLNRILGMPVDLQNRLFQYFTDTLKAIIAQAKKSGRFDLGI 1456          
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A0K0FW75_STRVS (Protein strawberry notch homolog 2 (inferred by orthology to a human protein) n=2 Tax=Strongyloides TaxID=6247 RepID=A0A0K0FW75_STRVS)

HSP 1 Score: 65.1 bits (157), Expect = 6.430e-10
Identity = 31/78 (39.74%), Postives = 47/78 (60.26%), Query Frame = 1
Query:    4 FFEAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTI 237
            FF     +++GVG+  +  +      +  N + +FLNRLLG+P+ AQN LF+YF  + E  ++QAK DG YD GI  +
Sbjct: 1115 FFSDMRQYLEGVGILSVNKLGQYSIERDGNSIAKFLNRLLGLPVHAQNALFEYFTLILEELIRQAKYDGTYDMGIMDV 1192          
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A7D9HFC7_PARCT (Strawberry notch homolog 1 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HFC7_PARCT)

HSP 1 Score: 64.7 bits (156), Expect = 8.660e-10
Identity = 34/75 (45.33%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   34 GVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTI--QGQSV 252
            GVG+  +G    +   K    + +FLNRLLG+ +A QN LFQYF    EA +++AKR+GRYD+GI  +  QG+ V
Sbjct:  804 GVGLIVVGQFGNEILDKDFANISKFLNRLLGVEVALQNALFQYFTSTLEAVIQRAKRNGRYDEGILDLGSQGEDV 878          
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: E3LX19_CAERE (CRE-LET-765 protein n=6 Tax=Caenorhabditis TaxID=6237 RepID=E3LX19_CAERE)

HSP 1 Score: 64.3 bits (155), Expect = 1.210e-9
Identity = 32/78 (41.03%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    4 FFEAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTI 237
            FFE   ++M+GVG+     M      K    + +FLNR+LG+P+ AQN LFQYF  +    + Q+K DG YD GI  +
Sbjct: 1572 FFEDMRLYMEGVGLLAKNKMGQYTIEKEAATIPKFLNRILGLPVHAQNSLFQYFSEIVAELIAQSKHDGTYDTGIMDL 1649          
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Match: A0A8J2WWD9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WWD9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.630e-9
Identity = 32/81 (39.51%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   10 EAAAVWMKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLHEAHVKQAKRDGRYDDGIRTIQGQSV 252
              A +W+  VG+       A  A K +  V +FLNR+LG+ ++ Q +LF YF    E  ++ AKRDG+Y  GI+T+ G+SV
Sbjct:  946 HGAPLWLSLVGIAVASYEGAGSARKAV--VPKFLNRILGLEVSRQQKLFDYFARTLERMIRAAKRDGKYAQGIQTVDGRSV 1024          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6301.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3R9_ECTSI9.800e-1641.74Helicase_C_4 domain-containing protein n=1 Tax=Ect... [more]
A0A0K0ELL9_STRER1.550e-1142.31Uncharacterized protein n=1 Tax=Strongyloides ster... [more]
A0A7S4A0M8_9STRA1.850e-1037.93Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A6P7S4D2_OCTVU3.460e-1037.11protein strawberry notch homolog 1 isoform X1 n=3 ... [more]
A0A090L1K8_STRRB3.470e-1041.03Protein strawberry notch homolog 2 n=1 Tax=Strongy... [more]
A0A7R9B3U3_TIMSH3.480e-1044.16Hypothetical protein n=3 Tax=Timema TaxID=61471 Re... [more]
A0A0K0FW75_STRVS6.430e-1039.74Protein strawberry notch homolog 2 (inferred by or... [more]
A0A7D9HFC7_PARCT8.660e-1045.33Strawberry notch homolog 1 (Fragment) n=2 Tax=Para... [more]
E3LX19_CAERE1.210e-941.03CRE-LET-765 protein n=6 Tax=Caenorhabditis TaxID=6... [more]
A0A8J2WWD9_9STRA1.630e-939.51Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6301contigP-wetherbeei_contig6301:185..717 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2903.EOD16011
PFAMsHelicase_C_4
Model size339
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.76e-13
EggNOG OGsKOG1513@1|root,KOG1513@2759|Eukaryota
Descriptioncellular response to interleukin-11
Cds size312
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186903.3621194-CDS-P-wetherbeei_contig6301:184..3791683186903.3621194-CDS-P-wetherbeei_contig6301:184..379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6301 185..379 -
1683186903.3750994-CDS-P-wetherbeei_contig6301:573..6901683186903.3750994-CDS-P-wetherbeei_contig6301:573..690Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6301 574..690 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186903.3889318-UTR-P-wetherbeei_contig6301:690..7171683186903.3889318-UTR-P-wetherbeei_contig6301:690..717Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6301 691..717 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6301.1.1prot_P-wetherbeei_contig6301.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6301 185..690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6301.1.1

>prot_P-wetherbeei_contig6301.1.1 ID=prot_P-wetherbeei_contig6301.1.1|Name=mRNA_P-wetherbeei_contig6301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=104bp
MKGVGVDPLGIMTAKEASKILNQVGRFLNRLLGIPIAAQNELFQYFIHLH
EAHVKQAKRDGRYDDGIRTIQGQSVVVSAGSPLQIDRDGVKPGDVVSHQV
GFA*
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mRNA from alignment at P-wetherbeei_contig6301:185..717-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6301.1.1 ID=mRNA_P-wetherbeei_contig6301.1.1|Name=mRNA_P-wetherbeei_contig6301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=533bp|location=Sequence derived from alignment at P-wetherbeei_contig6301:185..717- (Phaeothamnion wetherbeei SAG_119_79)
ACTTTCTTTGAGGCCGCGGCGGTGTGGATGAAGGGCGTCGGCGTCGACCC GCTGGGCATCATGACGGCCAAGGAGGCGAGCAAGATTCTCAATCAAGTCG GCCGCTTTCTCAACCGCCTGCTCGGCATCCCCATCGCGGCGCAGGTCAGT CAGTGATGACTGGCATTAGCGGCGGCAGGGGGGCGGCATTCTCCGGCTTG TGCGCGGCTGTTCTAGAAGTGTTTGGTTAGAATATCCGCCGCCTCTTGTT GACCTCGTGGACGCTTAAAATCCCCCCCTTCCTCCCCCGGGCCGCCTCCC ACTGCGCCGCATGGGAACGGCACACGGATCGCCCGCAGAATGAATTATTC CAGTATTTCATTCATTTGCACGAAGCGCACGTCAAGCAGGCGAAGCGTGA CGGGCGCTATGACGACGGCATCCGCACAATCCAGGGTCAAAGCGTCGTCG TGAGCGCCGGCAGCCCGCTGCAGATCGACCGGGACGGCGTAAAGCCCGGT GACGTCGTGTCGCATCAGGTTGGTTTTGCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6301:185..717-

>mRNA_P-wetherbeei_contig6301.1.1 ID=mRNA_P-wetherbeei_contig6301.1.1|Name=mRNA_P-wetherbeei_contig6301.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=312bp|location=Sequence derived from alignment at P-wetherbeei_contig6301:185..717- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGGGCGTCGGCGTCGACCCGCTGGGCATCATGACGGCCAAGGAGGC
GAGCAAGATTCTCAATCAAGTCGGCCGCTTTCTCAACCGCCTGCTCGGCA
TCCCCATCGCGGCGCAGAATGAATTATTCCAGTATTTCATTCATTTGCAC
GAAGCGCACGTCAAGCAGGCGAAGCGTGACGGGCGCTATGACGACGGCAT
CCGCACAATCCAGGGTCAAAGCGTCGTCGTGAGCGCCGGCAGCCCGCTGC
AGATCGACCGGGACGGCGTAAAGCCCGGTGACGTCGTGTCGCATCAGGTT
GGTTTTGCTTGA
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