mRNA_P-wetherbeei_contig6269.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6269.2.1
Unique NamemRNA_P-wetherbeei_contig6269.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6269.2.1 vs. uniprot
Match: A0A7J7NVZ7_9MAGN (Uncharacterized protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NVZ7_9MAGN)

HSP 1 Score: 66.2 bits (160), Expect = 2.100e-11
Identity = 27/51 (52.94%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:    1 SQDHYVKLYSMPGFEFRTNATRFTAPVRDVCYSPNGNMMAMAGEQPGIRVV 153
            S DH VKLY  PG EF+TN TRFT P+R +C++ +G+M+A AG+  GI+++
Sbjct:   81 SIDHSVKLYKFPGGEFQTNITRFTLPIRSLCFNKSGSMLAAAGDDDGIKLI 131
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BLAST of mRNA_P-wetherbeei_contig6269.2.1 vs. uniprot
Match: A0A8B8KVZ9_ABRPR (WD repeat and HMG-box DNA-binding protein 1-like n=1 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8KVZ9_ABRPR)

HSP 1 Score: 58.2 bits (139), Expect = 1.490e-8
Identity = 25/52 (48.08%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:    7 DHYVKLYSMPG---FEFRTNATRFTAPVRDVCYSPNGNMMAMAGEQPGIRVV 153
            DH VKLY  PG   +EF TN TRFT P+R + ++ +G+M+A AG+  GI+++
Sbjct:   83 DHSVKLYKFPGTPLWEFETNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLI 134
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BLAST of mRNA_P-wetherbeei_contig6269.2.1 vs. uniprot
Match: UPI0018F8236E (WD repeat and HMG-box DNA-binding protein 1-like isoform X1 n=3 Tax=Tripterygium wilfordii TaxID=458696 RepID=UPI0018F8236E)

HSP 1 Score: 56.6 bits (135), Expect = 5.210e-8
Identity = 23/51 (45.10%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 SQDHYVKLYSMPGFEFRTNATRFTAPVRDVCYSPNGNMMAMAGEQPGIRVV 153
            S DH VKLY  P  +  TN TRFT P+R + ++ +G+M+A+AG+  GI+++
Sbjct:   83 SVDHSVKLYKFPSGQLETNITRFTLPIRVLAFNKSGSMLAVAGDDEGIKLI 133
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BLAST of mRNA_P-wetherbeei_contig6269.2.1 vs. uniprot
Match: A0A1Y1VL83_9FUNG (WD40 repeat-like protein n=2 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VL83_9FUNG)

HSP 1 Score: 52.8 bits (125), Expect = 1.200e-6
Identity = 21/51 (41.18%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 SQDHYVKLYSMPGFEFRTNATRFTAPVRDVCYSPNGNMMAMAGEQPGIRVV 153
            S+D  VKL+  PG ++    TRF+ PVR VC+SP+G  +A+A ++  +R++
Sbjct:   71 SEDGTVKLFEYPGGKYEKTLTRFSLPVRSVCFSPDGRRVAVASDELKVRII 121
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BLAST of mRNA_P-wetherbeei_contig6269.2.1 vs. uniprot
Match: A0A1Y3NWR9_PIRSE (Mcl1_mid domain-containing protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NWR9_PIRSE)

HSP 1 Score: 50.1 bits (118), Expect = 1.070e-5
Identity = 23/44 (52.27%), Postives = 29/44 (65.91%), Query Frame = 1 
Query:    1 SQDHYVKLYSMPGFEFRTNATRFTAPVRDVCYSPNGNMMAMAGE 132
            S+D  VKL+  P   FR   TRFT PVR VC+SP+G  +A+A E
Sbjct:   71 SEDGTVKLFEYPSGTFRKLLTRFTLPVRSVCFSPDGRRVAVASE 114
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6269.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7J7NVZ7_9MAGN2.100e-1152.94Uncharacterized protein n=1 Tax=Kingdonia uniflora... [more]
A0A8B8KVZ9_ABRPR1.490e-848.08WD repeat and HMG-box DNA-binding protein 1-like n... [more]
UPI0018F8236E5.210e-845.10WD repeat and HMG-box DNA-binding protein 1-like i... [more]
A0A1Y1VL83_9FUNG1.200e-641.18WD40 repeat-like protein n=2 Tax=Piromyces finnis ... [more]
A0A1Y3NWR9_PIRSE1.070e-552.27Mcl1_mid domain-containing protein n=1 Tax=Piromyc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6269contigP-wetherbeei_contig6269:2995..3373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2711.XP_006485722.1
PFAMsMcl1_mid,WD40
Model size153
Max annot lvl35493|Streptophyta
KEGG koko:K11274
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue5.35e-06
EggNOG OGsKOG1274@1|root,KOG1274@2759|Eukaryota,37JXC@33090|Viridiplantae,3GDVN@35493|Streptophyta
DescriptionWD repeat and HMG-box DNA-binding protein
Cds size123
COG categoryO
BRITEko00000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186901.3459659-CDS-P-wetherbeei_contig6269:2994..30441683186901.3459659-CDS-P-wetherbeei_contig6269:2994..3044Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6269 2995..3044 -
1683186901.3548603-CDS-P-wetherbeei_contig6269:3270..33431683186901.3548603-CDS-P-wetherbeei_contig6269:3270..3343Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6269 3271..3343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186901.3626442-UTR-P-wetherbeei_contig6269:3343..33731683186901.3626442-UTR-P-wetherbeei_contig6269:3343..3373Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6269 3344..3373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6269.2.1prot_P-wetherbeei_contig6269.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6269 2995..3343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6269.2.1

>prot_P-wetherbeei_contig6269.2.1 ID=prot_P-wetherbeei_contig6269.2.1|Name=mRNA_P-wetherbeei_contig6269.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=41bp
MPGFEFRTNATRFTAPVRDVCYSPNGNMMAMAGEQPGIRVV
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mRNA from alignment at P-wetherbeei_contig6269:2995..3373-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6269.2.1 ID=mRNA_P-wetherbeei_contig6269.2.1|Name=mRNA_P-wetherbeei_contig6269.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=379bp|location=Sequence derived from alignment at P-wetherbeei_contig6269:2995..3373- (Phaeothamnion wetherbeei SAG_119_79)
TCCCAGGACCACTACGTCAAGCTGTACTCCATGCCGGGATTCGAGTTCAG
GACCAACGCCACGCGCTTCACCGCGCCTGTGCGCGACGTCTGCTACAGCC
CTAGTGAGCCATAGACCTTTCCTGCAGCGGTCTGGCAACAATACAAAGAC
TTTCACGTAGTTCTGGCTGCTGCGCATTTCGTCCCTTGCCCGTAAATGCT
GGGGAGGGCTTTTCAGCGCTGCACCTGCACCATGGGAGTTTCGCGCCTTC
ACTGACTGCATGCGTCTGCCGCCGTGGCGCTGCCGCCGCCGCCGCCGGCG
TGCCTCGTCCTCCCCTCACCGTTGCGCAGACGGCAACATGATGGCCATGG
CCGGCGAGCAGCCCGGCATTCGTGTCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6269:2995..3373-

>mRNA_P-wetherbeei_contig6269.2.1 ID=mRNA_P-wetherbeei_contig6269.2.1|Name=mRNA_P-wetherbeei_contig6269.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=123bp|location=Sequence derived from alignment at P-wetherbeei_contig6269:2995..3373- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGGATTCGAGTTCAGGACCAACGCCACGCGCTTCACCGCGCCTGT
GCGCGACGTCTGCTACAGCCCTAACGGCAACATGATGGCCATGGCCGGCG
AGCAGCCCGGCATTCGTGTCGTG
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