mRNA_P-wetherbeei_contig6265.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79
|
Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6265.1.3 vs. uniprot
Match: A0A836CN60_9STRA (Low-co2 inducible protein lcib n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN60_9STRA) HSP 1 Score: 191 bits (486), Expect = 2.100e-55 Identity = 99/225 (44.00%), Postives = 142/225 (63.11%), Query Frame = 1
Query: 7 AVLGELGFTKESCIANIAVCRDELCTPAVGLIRDRLGDPFGMRGLGGLLSAGMTGFGASQAHSPVCAENRRRFVYFHATHIGIGPDGTFGECDRPGTPDLSHACGALMALRGELERSGGKLSGEMDMDDVEMSTLRKLLLPHLDASEEVPDIVDLTKLVSSVVVEEQLKRFVAATVDTAAADYALVAGVQIHAPN-GTTFFCPSAENCYAVVSGDRRQISMVRQV 678
+VL + GF +++ IA + +CRDE+C + ++ + G+ FG RGLGG + AG TGFGA+ AH P + R ++VY A HIGIG DG G C+R G S ACGAL A G L S G +S ++ MDD+EMS + LLL + VPD+ +LTK+ + ++ E+Q+ +AATVD A ADYA++ G+QIH P T+ P A+ CYAVV G++ +S+ V
Sbjct: 48 SVLNKAGFREDNSIACVGICRDEICGSLMTEVQSKFGESFGFRGLGGFIFAGKTGFGAAHAHCPANPDGRHKYVYIVAPHIGIGQDGKLGSCNRAGIGHTSTACGALAAFHGGL--SSGSVSPQLAMDDLEMSAMSALLLQSIPWG-TVPDLAELTKIAARIIAEKQVAAAIAATVDPAKADYAMITGIQIHGPGLQQTYIMPIADLCYAVVDGEKTMLSIPEAV 269
BLAST of mRNA_P-wetherbeei_contig6265.1.3 vs. uniprot
Match: A0A835ZEI4_9STRA (Low-co2 inducible protein lcib n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEI4_9STRA) HSP 1 Score: 186 bits (472), Expect = 1.360e-53 Identity = 104/241 (43.15%), Postives = 140/241 (58.09%), Query Frame = 1
Query: 13 LGELGFTKESCIANIAVCRDELCTPAVGLIRDRLGDPFGMRGLGGLLSAGMTGFGASQAHSPVCAENRRRFVYFHATHIGIGPDGTFGECDRPGTPDLSHACGALMALRGELERSGGKLSGEMDMDDVEMSTLRKLLLPHLDASEEVPDIVDLTKLVSSVVVEEQLKRFVAATVDTAAADYALVAGVQIHAPN-GTTFFCPSAENCYAVVSGDRRQISMVRQVNFA*SSSGPGKDKEGRLA 732
L +LGF ES IA I +CRDE+C V + R GD F RGLGG + G TGF A+ AHSP+ + R +++Y A HIGI DGT G CDR G SHACGAL A L + G + + MDD+EMS + +LL+ ++ VPD +LTK+ + V++ +QL+ + TVDT+ ADYA+VAG+QIH P +FF P ++CYAVV G R + + P G LA
Sbjct: 12 LDKLGFRDESTIACIGICRDEICGALVEETKARFGDLFVFRGLGGFIFCGKTGFRAAHAHSPLNEDGREKYLYIVAPHIGISADGTLGTCDRKGRGGTSHACGALHAFHQMLRK--GHVDTRLAMDDIEMSVMSQLLIQDIEWG-SVPDFGELTKIAARVIIRKQLEEIIRETVDTSRADYAVVAGIQIHGPGYHHSFFMPMQKHCYAVVKGKRVALPVTELKRHGAGRRRPAGAAAGALA 249
BLAST of mRNA_P-wetherbeei_contig6265.1.3 vs. uniprot
Match: A0A836CPA8_9STRA (LCIB_C_CA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPA8_9STRA) HSP 1 Score: 163 bits (413), Expect = 5.690e-44 Identity = 92/217 (42.40%), Postives = 130/217 (59.91%), Query Frame = 1
Query: 25 GFTKESCIANIAVCRDELCTPAVGLIRDRLGDPFGMRGLGGLLSAGMTGFGASQAHSPVCAEN-RRRFVYFHATHIGIGPDGTFGECDRPGTP-DLSHACGALMALRGELERSGGKLSGEMDMDDVEMSTLRKLLLPHLDASEEVPDIVDLTKLVSSVVVEEQLKRFVAATVDTAAADYALVAGVQIHAPN-GTTFFCPSAENCYAVVSGDRRQISM 666
GF ++ IA I VCRDE+C + ++ R GD F RGL G + G TG A+ AHSP+C E R +++Y A HIG+ DGT G DR G + S+ACGAL L + G++ + MDD+EMS + +LL+ ++ VPD+ +LTKL S V+V+ QL+ + TVDT ADYA++AGVQIH P +F P + CY +V G R + +
Sbjct: 86 GFKDDNTIACIGVCRDEICGTLMDEVKKRFGDLFIFRGLAGFIFCGKTGLKAAHAHSPICNETGREKYLYVVAAHIGVSADGTLGRVDRRGRGGEASYACGALAYFHSMLVK--GQVDTRLAMDDIEMSVMSQLLIHNIKWG-TVPDMAELTKLASRVIVQSQLEEIIRETVDTRKADYAIIAGVQIHGPGFQQNYFYPMDDLCYGMVEGKRVTLDV 299
BLAST of mRNA_P-wetherbeei_contig6265.1.3 vs. uniprot
Match: A0A7Z1TRP3_9BACT (LCIB_C_CA domain-containing protein n=1 Tax=Holophagae bacterium TaxID=2073116 RepID=A0A7Z1TRP3_9BACT) HSP 1 Score: 146 bits (369), Expect = 1.450e-38 Identity = 88/217 (40.55%), Postives = 126/217 (58.06%), Query Frame = 1
Query: 19 ELGFTKESCIANIAVCRDELCTPAVGLIRDRLGDPFGMRGLGGLLSAGMTGFGASQAHSPVCAENRRRFVYFHATHIGIGPDGTFGECDRPGTPDLSHACGALMALRGELERSGGKLSGEMDMDDVEMSTLRKLLLPHLDASEEVPDIVDLTKLVSSVVVEEQLKRFVAATVDTAAADYALVAGVQIHAPNGTTFFCPSAENCYAVVSGDRRQISMV 669
E GF+ ++ +A + VCRDEL + ++ R G F + L GLL G TGF A++ H+P+ A R R+++F A HIGIG G G C R G P S ACGAL A GELE GG+L D D+E S L++ LL L +P ++DLT+ + + L+ + +D A D+A++AG+QIHAP +F P A CY+ V G R++IS+
Sbjct: 32 ERGFSMDNTLACVGVCRDELGSSLPHAVQARWGWTFSLSTLAGLLFLGRTGFAAARRHAPI-AGGRERYLFFVAPHIGIGAGGEIGVCSRIGRPGTSQACGALCAFLGELE--GGRLELATDPGDIEHSLLKQRLLRELPFG-RLPSLIDLTRAAYRAITGD-LETLIGQALDPAENDWAVLAGIQIHAPGNEPWFWPGA--CYSEVRGRRQEISLA 241
BLAST of mRNA_P-wetherbeei_contig6265.1.3 vs. uniprot
Match: A0A7C4MV18_9BACT (LCIB_C_CA domain-containing protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7C4MV18_9BACT) HSP 1 Score: 142 bits (359), Expect = 3.990e-37 Identity = 83/219 (37.90%), Postives = 130/219 (59.36%), Query Frame = 1
Query: 10 VLGELGFTKESCIANIAVCRDELCTPAVGLIRDRLGDPFGMRGLGGLLSAGMTGFGASQAHSPVCAENRRRFVYFHATHIGIGPDGTFGECDRPGTPDLSHACGALMALRGELERSGGKLSGEMDMDDVEMSTLRKLLLPHLDASEEVPDIVDLTKLVSSVVVEEQLKRFVAATVDTAAADYALVAGVQIHAPNGTTFFCPSAENCYAVVSGDRRQISM 666
+LGE GFT ++ IA++ VCRDE+ LI+ G+ F L G+ +AG TG A+ H+P E R R++++ H I DG G C R G D S ACGAL EL + GKL ++D +D+E S L++ LL + +PD+++LTK+ VV +E L+ + VDT+ +DYA++ G+QIHAP+ + P+ + YAV++G +++I +
Sbjct: 27 MLGEFGFTGDNSIASVCVCRDEISQTVRSLIKHTWGEAFNFSSLAGMFTAGKTGLKAAIHHAPQ-VEGRERYIFYVIPHTAINEDGKSGFCKRRGIKDDSSACGALCLFLSELHQ--GKLIIKLDEEDIEESLLKRRLLREIPYG-HLPDLIELTKMTRKVV-QEDLEHIIEKVVDTSKSDYAVLTGIQIHAPDAN-YIWPA--DSYAVINGKKQEIKI 237
BLAST of mRNA_P-wetherbeei_contig6265.1.3 vs. uniprot
Match: A0A7S4FTA7_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FTA7_9EUGL) HSP 1 Score: 145 bits (367), Expect = 1.800e-36 Identity = 82/202 (40.59%), Postives = 122/202 (60.40%), Query Frame = 1
Query: 10 VLGELGFTKESCIANIAVCRDELCTPAVGLIRDRLGDPFGMRGLGGLLSAGMTGFGASQAHSPVCAENRRRFVYFHATHIGIGPDGTFGECDRPGTPDLSHACGALMALRGELERSGGKLSGEMDMDDVEMSTLRKLLLPHLDASEEVPDIVDLTKLVSSVVVEEQLKRFVAATVDTAAADYALVAGVQIHAPNGTTFFCPS 615
VL E G K++ IA I+VCRDE V + + G F M + G+++ G TG GA AH+P+C + R+V+ A HI I G G+C RPG ++ ACGAL+A+ GEL+ GKL +D D+E+S +++ LL + EVP +V LTK S ++E+QL+ +AA D + ++A V+GVQ+H P+G FF P+
Sbjct: 115 VLNEAGLNKDNAIAMISVCRDEFTREIVESLDEFWGQSFSMGSIAGMVNMGKTGMGAGMAHAPICPDGVERYVFVSAPHIAISEKGEIGKCYRPGRKQINAACGALLAMLGELQ--DGKLQVTLDTTDLEISKMKQQLLGYFTYG-EVPTLVQLTKA-SRRLIEDQLEAILAAK-DLSNTEFAFVSGVQVHGPDGFNFFWPA 311
BLAST of mRNA_P-wetherbeei_contig6265.1.3 vs. uniprot
Match: A0A7S4D203_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4D203_9EUGL) HSP 1 Score: 145 bits (365), Expect = 3.750e-36 Identity = 81/202 (40.10%), Postives = 121/202 (59.90%), Query Frame = 1
Query: 10 VLGELGFTKESCIANIAVCRDELCTPAVGLIRDRLGDPFGMRGLGGLLSAGMTGFGASQAHSPVCAENRRRFVYFHATHIGIGPDGTFGECDRPGTPDLSHACGALMALRGELERSGGKLSGEMDMDDVEMSTLRKLLLPHLDASEEVPDIVDLTKLVSSVVVEEQLKRFVAATVDTAAADYALVAGVQIHAPNGTTFFCPS 615
VL E G K++ IA I+VCRDE V + + G F M + G+++ G TG GA AH+P+C + R+V+ A HI I G G+C RPG ++ ACGAL+A+ GEL+ GKL +D D+E+S +++ L +L +VPD+V LTK ++ E+QL+ +A D + ++A V+GVQIH P+G FF P+
Sbjct: 115 VLNEAGLNKDNAIAMISVCRDEFTREIVESLDEFWGQSFSMGSIAGMVNMGKTGMGAGMAHAPICPDGVERYVFVSAPHIAISEKGEIGKCYRPGRKQINAACGALLAMLGELQ--DGKLQVTLDTTDLEISKMKQQLAGYLTYG-KVPDLVGLTKAAQKLI-EDQLEAILAEK-DLSNTEFAFVSGVQIHGPDGMNFFWPT 311
BLAST of mRNA_P-wetherbeei_contig6265.1.3 vs. uniprot
Match: A0A7S1HDB7_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1HDB7_HEMAN) HSP 1 Score: 129 bits (325), Expect = 3.840e-30 Identity = 77/203 (37.93%), Postives = 115/203 (56.65%), Query Frame = 1
Query: 10 VLGELGFTKESCIANIAVCRDELCTPAVGLIRDRLGDPFGMRGLGGLLSAGMTGFGASQAHSPVCAENRRRFVYFHATHIGIGPDGTFGECDRPGTPDLSHACGALMALRGELERSGGKLSGEMDMDDVEMSTLRKLLLPHLDASEEVPDIVDLTKLVSSVVVEEQLKRFVAATVDTAAADYALVAGVQIHAPNGTTFFCPSA 618
VL GF ++ I ++ CRDELC P + + G F + LGG++ G TGF A+ AHSP E + R+V++ A HI I G G R G ++SHACGAL+AL GE++R GKL ++ DD+E S L++ ++ HL +VP +V LT + ++ R A+V+ +Y ++AGVQ+H G FF P +
Sbjct: 158 VLNNHGFNPKTSINLVSCCRDELCRPFTEELDRKWGHSFNISSLGGMVFCGRTGFKAAMAHSPT-VEGKERYVFWVAPHIAIPMSGEEGTIFRDGRENVSHACGALLALLGEIKR--GKLDLTLNNDDLEQSLLKQHIVSHLQYG-QVPSLVQLTYAAYECI-RSEVHRVARASVNPKQCEYVVIAGVQVHGALGQNFFWPGS 355
BLAST of mRNA_P-wetherbeei_contig6265.1.3 vs. uniprot
Match: A0A7Y8HB16_9BACT (LCIB_C_CA domain-containing protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7Y8HB16_9BACT) HSP 1 Score: 123 bits (309), Expect = 6.360e-30 Identity = 78/227 (34.36%), Postives = 127/227 (55.95%), Query Frame = 1
Query: 13 LGELGFTKESCIANIAVCRDELCTPAVGLIRDRLGDPFGMRGLGGLLSAGMTGFGASQAHSPVCAENRRRFVYFHATHIGIGPDGTFGECDRPGTPDLSHACGALMALRGEL------ERSGGKLSG---EMDMDDVEMSTLRKLLLPHLDASEEVPDIVDLTKLVSSVVVEEQLKRFVAATVDTAAADYALVAGVQIHAPNGTTFFCPSAENCYAVVSGDRRQISM 666
L + GF E+ IA++ +CRDE+C +I+ G+ F + LGG+ +AG T ++ H+P +N R+V++ H I +G G C R G + S ACGAL + EL ++ G+L ++D +D+EMS +RK LL + VPD+ +LTK+ + + + + VD + +DYALV G+QIHAP+G + P+ CYA V+G R ++++
Sbjct: 8 LEKYGFNDENAIASVCICRDEICQSLRSIIKHVWGEAFNLSSLGGMFTAGKTALLSAIHHAPKI-DNNERYVFYIIPHTAIDEEGRMGICSRRGIRE-STACGALSIFQKELSNKYLRKKGKGRLKHSIHKIDEEDIEMSLIRKRLLIEIPYG-YVPDLFELTKITRKAI-QTDFENVIKKVVDKSKSDYALVTGIQIHAPDGN-YIWPA--ECYAFVNGLRIEVTL 227
BLAST of mRNA_P-wetherbeei_contig6265.1.3 vs. uniprot
Match: A0A7R9VTR2_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9VTR2_9CHLO) HSP 1 Score: 111 bits (277), Expect = 6.680e-24 Identity = 77/234 (32.91%), Postives = 112/234 (47.86%), Query Frame = 1
Query: 10 VLGELGFTKESCIANIAVCRDELCTPAVGLIRDRLGDPFGMRGLGGLLSAGMTGFGASQAHSPVCAENRRRFVYFHATHIGIGPDGTFGECDRPGTPDLSHACGALMALRGELERSGG----KLSGEMDMDDVEMSTLRKLLLPHLDASEEVPDIVDLTKLVSSV--VVEEQLKRFVAATVDTAAADYALVAGVQIH--------APNGTTFFCPSAENCYAVVSGDRRQISMV 669
+L GF+ ++ IA +CRDE+ I G F GLGG+++ G+TGFGA +HSP C + ++V+F HI I G+ G RPG S ACGA+ GE + G K G+ D D E S L++ L L A +DL K+ ++ + L+ ++ V+ ADYA+V GVQIH A F P+ Y VV+G R + +
Sbjct: 101 MLSFYGFSGDNSIACTNLCRDEVTAILKDKIEGVFGSSFMTNGLGGVITCGVTGFGAGLSHSPTCPAGKEKYVFFSFPHIAIDAQGSVGSISRPGRAGPSCACGAMAKALGEFKADGYTNACKEPGQHDALDPEYSILKRRLAHTLRAERADVSDLDLAKITAAAERTITADLEYLISKAVNLDKADYAVVTGVQIHNWASEEPGAAPSMEFVAPT--KMYVVVNGVRTNLDVT 332 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6265.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6265.1.3 >prot_P-wetherbeei_contig6265.1.3 ID=prot_P-wetherbeei_contig6265.1.3|Name=mRNA_P-wetherbeei_contig6265.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=187bp MRGLGGLLSAGMTGFGASQAHSPVCAENRRRFVYFHATHIGIGPDGTFGEback to top mRNA from alignment at P-wetherbeei_contig6265:131..2438- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6265.1.3 ID=mRNA_P-wetherbeei_contig6265.1.3|Name=mRNA_P-wetherbeei_contig6265.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2308bp|location=Sequence derived from alignment at P-wetherbeei_contig6265:131..2438- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6265:131..2438- >mRNA_P-wetherbeei_contig6265.1.3 ID=mRNA_P-wetherbeei_contig6265.1.3|Name=mRNA_P-wetherbeei_contig6265.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=561bp|location=Sequence derived from alignment at P-wetherbeei_contig6265:131..2438- (Phaeothamnion wetherbeei SAG_119_79)back to top |