mRNA_P-wetherbeei_contig6256.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6256.2.1
Unique NamemRNA_P-wetherbeei_contig6256.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6256.2.1 vs. uniprot
Match: A0A7Z9PX43_9BACT (DUF350 domain-containing protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9PX43_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 9.060e-17
Identity = 35/64 (54.69%), Postives = 50/64 (78.12%), Query Frame = 1
Query:   13 TEFARAVLWSFVAAIAMGISMGMVIKIYDFLTPGLDELDELRKGNVAVGIVVGCVILATGFVIG 204
            +E  RA  W+F++AI MG+  G+ +K +D +TPG+DE++ELRKGN+AV IVV  VI+A GFV+G
Sbjct:    6 SEILRACGWAFLSAILMGVGTGLGVKFFDVMTPGVDEMEELRKGNIAVAIVVAAVIIAIGFVMG 69          
BLAST of mRNA_P-wetherbeei_contig6256.2.1 vs. uniprot
Match: A0A7X8XKH6_9BURK (DUF350 domain-containing protein n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XKH6_9BURK)

HSP 1 Score: 62.8 bits (151), Expect = 2.280e-11
Identity = 29/62 (46.77%), Postives = 47/62 (75.81%), Query Frame = 1
Query:   16 EFARAVLWSFVAAIAMGISMGMVIKIYDFLTPGLDELDELRKGNVAVGIVVGCVILATGFVI 201
            E  + ++W+ VA++AM +S+G+++ ++D +TP +DE +EL+KGNVAV IV+  VIL  G VI
Sbjct:    7 EALKTLVWALVASVAMSLSLGLLMFVWDKMTPRIDEWEELKKGNVAVAIVMAAVILTFGIVI 68          
BLAST of mRNA_P-wetherbeei_contig6256.2.1 vs. uniprot
Match: A0A2N1PVG7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Wallbacteria bacterium HGW-Wallbacteria-1 TaxID=2013854 RepID=A0A2N1PVG7_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 3.690e-10
Identity = 27/62 (43.55%), Postives = 48/62 (77.42%), Query Frame = 1
Query:   16 EFARAVLWSFVAAIAMGISMGMVIKIYDFLTPGLDELDELRKGNVAVGIVVGCVILATGFVI 201
            E    + W+ V A++MGIS+G++IK +D++TP ++E ++++ GN+A+G+V+G VI+A G VI
Sbjct:   11 EAVLTIAWALVGALSMGISLGLLIKFFDWMTP-VNEWNQIKNGNIAMGLVLGSVIMAFGLVI 71          
BLAST of mRNA_P-wetherbeei_contig6256.2.1 vs. uniprot
Match: K1Y7S1_9BACT (Uncharacterized protein n=2 Tax=Bacteria TaxID=2 RepID=K1Y7S1_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 7.760e-10
Identity = 27/57 (47.37%), Postives = 44/57 (77.19%), Query Frame = 1
Query:   37 WSFVAAIAMGISMGMVIKIYDFLTPGLDELDELRKGNVAVGIVVGCVILATGFVIGM 207
            W+   AI+M +S+G+++KI  ++TP +DE +EL+KGN+AVGI +  V++ T FVIG+
Sbjct:   14 WAITGAISMAVSLGIMLKILSWITP-IDEWEELKKGNMAVGIFLMAVVIGTAFVIGL 69          
BLAST of mRNA_P-wetherbeei_contig6256.2.1 vs. uniprot
Match: UPI0011A0393D (DUF350 domain-containing protein n=1 Tax=Rosistilla oblonga TaxID=2527990 RepID=UPI0011A0393D)

HSP 1 Score: 57.4 bits (137), Expect = 2.270e-9
Identity = 25/56 (44.64%), Postives = 42/56 (75.00%), Query Frame = 1
Query:   37 WSFVAAIAMGISMGMVIKIYDFLTPGLDELDELRKGNVAVGIVVGCVILATGFVIG 204
            W+   AI+MG+++ + ++++D  T  +DE +EL+KGN+AV IV+  VILA G+V+G
Sbjct:   14 WAITGAISMGMAIIIAVRLFDLSTGSIDEWEELKKGNMAVAIVLSAVILAVGYVVG 69          
BLAST of mRNA_P-wetherbeei_contig6256.2.1 vs. uniprot
Match: A0A1V5PTJ2_9BACT (Uncharacterized protein n=1 Tax=bacterium ADurb.Bin363 TaxID=1866927 RepID=A0A1V5PTJ2_9BACT)

HSP 1 Score: 56.6 bits (135), Expect = 4.920e-9
Identity = 27/55 (49.09%), Postives = 41/55 (74.55%), Query Frame = 1
Query:   37 WSFVAAIAMGISMGMVIKIYDFLTPGLDELDELRKGNVAVGIVVGCVILATGFVI 201
            W  V A+ M +S+G++I+I+D+LTP +DE  E+ KGNV+V I++  VI+A G VI
Sbjct:   17 WGIVGAVTMSLSLGILIRIFDWLTP-VDEWKEIEKGNVSVAIILAAVIIAFGLVI 70          
BLAST of mRNA_P-wetherbeei_contig6256.2.1 vs. uniprot
Match: A0A7V5ASB7_9BACT (DUF350 domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V5ASB7_9BACT)

HSP 1 Score: 55.8 bits (133), Expect = 9.660e-9
Identity = 25/66 (37.88%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    4 RMLTEFARAVLWSFVAAIAMGISMGMVIKIYDFLTPGLDELDELRKGNVAVGIVVGCVILATGFVI 201
            ++L  +A  + W+ V A++MG+ + +++KI+ + T G+DE +EL+KGN+AV IV+  VI+    V+
Sbjct:    3 QILESYAVTLGWAIVGAVSMGVGLIIMLKIFTWSTAGIDEWEELKKGNIAVAIVMAAVIIGAAIVV 68          
BLAST of mRNA_P-wetherbeei_contig6256.2.1 vs. uniprot
Match: A0A2W6BDV3_9CHLR (Uncharacterized protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A2W6BDV3_9CHLR)

HSP 1 Score: 55.8 bits (133), Expect = 1.660e-8
Identity = 25/58 (43.10%), Postives = 39/58 (67.24%), Query Frame = 1
Query:   28 AVLWSFVAAIAMGISMGMVIKIYDFLTPGLDELDELRKGNVAVGIVVGCVILATGFVI 201
            A+LW+ V AI   + + + ++++  LTPGLDE+ ELRKGN+AVG+V    +L    V+
Sbjct:   35 ALLWAIVGAIVFSVIIALAMRVFSILTPGLDEMAELRKGNIAVGLVGAGFVLTVSVVV 92          
BLAST of mRNA_P-wetherbeei_contig6256.2.1 vs. uniprot
Match: A0A2E3AID3_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E3AID3_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 2.090e-8
Identity = 22/59 (37.29%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   25 RAVLWSFVAAIAMGISMGMVIKIYDFLTPGLDELDELRKGNVAVGIVVGCVILATGFVI 201
            RA+ WS VAA+   I +G+ +K++D ++ G+DE +E++KGN+ V ++   +IL+  F++
Sbjct:   17 RAIGWSVVAALGFSIGIGLALKVFDIMSVGIDEWEEIKKGNIGVALIFISLILSVAFLV 75          
BLAST of mRNA_P-wetherbeei_contig6256.2.1 vs. uniprot
Match: A0A7V1V0X6_9BACT (DUF350 domain-containing protein n=1 Tax=Nitrospirae bacterium TaxID=2026887 RepID=A0A7V1V0X6_9BACT)

HSP 1 Score: 55.1 bits (131), Expect = 3.040e-8
Identity = 27/61 (44.26%), Postives = 42/61 (68.85%), Query Frame = 1
Query:    4 RMLTEFARAVLWSFVAAIAMGISMGMVIKIYDFLTPGLDELDELRKGNVAVGIVVGCVILA 186
            R+L      VLW+ V+AIA  I + + +++++ +TPG+DE+ EL+ GN AV IV+G  ILA
Sbjct:   24 RVLINMLFLVLWAVVSAIAFAIVVPIAMRVFNRMTPGIDEMAELKNGNTAVAIVMGATILA 84          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6256.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9PX43_9BACT9.060e-1754.69DUF350 domain-containing protein n=1 Tax=Phycispha... [more]
A0A7X8XKH6_9BURK2.280e-1146.77DUF350 domain-containing protein n=1 Tax=Burkholde... [more]
A0A2N1PVG7_9BACT3.690e-1043.55Uncharacterized protein n=1 Tax=Candidatus Wallbac... [more]
K1Y7S1_9BACT7.760e-1047.37Uncharacterized protein n=2 Tax=Bacteria TaxID=2 R... [more]
UPI0011A0393D2.270e-944.64DUF350 domain-containing protein n=1 Tax=Rosistill... [more]
A0A1V5PTJ2_9BACT4.920e-949.09Uncharacterized protein n=1 Tax=bacterium ADurb.Bi... [more]
A0A7V5ASB7_9BACT9.660e-937.88DUF350 domain-containing protein n=1 Tax=bacterium... [more]
A0A2W6BDV3_9CHLR1.660e-843.10Uncharacterized protein n=1 Tax=Chloroflexi bacter... [more]
A0A2E3AID3_9BACT2.090e-837.29Uncharacterized protein n=1 Tax=Candidatus Marinim... [more]
A0A7V1V0X6_9BACT3.040e-844.26DUF350 domain-containing protein n=1 Tax=Nitrospir... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6256contigP-wetherbeei_contig6256:1280..1486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1278073.MYSTI_06575
PFAMsDUF350
Model size207
Max annot lvl2|Bacteria
Hectar predicted targeting categorysignal peptide
Exons1
Evalue1.28e-05
EggNOG OGs29VAW@1|root,30GR0@2|Bacteria
DescriptionDomain of Unknown Function (DUF350)
Cds size201
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186900.2732425-CDS-P-wetherbeei_contig6256:1279..14801683186900.2732425-CDS-P-wetherbeei_contig6256:1279..1480Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6256 1280..1480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186900.2838578-UTR-P-wetherbeei_contig6256:1480..14861683186900.2838578-UTR-P-wetherbeei_contig6256:1480..1486Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6256 1481..1486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6256.2.1prot_P-wetherbeei_contig6256.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6256 1280..1480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6256.2.1

>prot_P-wetherbeei_contig6256.2.1 ID=prot_P-wetherbeei_contig6256.2.1|Name=mRNA_P-wetherbeei_contig6256.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=67bp
MLTEFARAVLWSFVAAIAMGISMGMVIKIYDFLTPGLDELDELRKGNVAV
GIVVGCVILATGFVIGM
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mRNA from alignment at P-wetherbeei_contig6256:1280..1486-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6256.2.1 ID=mRNA_P-wetherbeei_contig6256.2.1|Name=mRNA_P-wetherbeei_contig6256.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=207bp|location=Sequence derived from alignment at P-wetherbeei_contig6256:1280..1486- (Phaeothamnion wetherbeei SAG_119_79)
GTTAGAATGCTGACCGAATTTGCTCGCGCTGTGCTGTGGTCCTTTGTCGC CGCTATCGCCATGGGCATCAGCATGGGGATGGTAATCAAGATATACGACT TCCTGACCCCGGGGCTCGACGAGCTTGACGAGTTGCGCAAGGGCAACGTC GCCGTCGGTATTGTCGTAGGCTGTGTGATTCTCGCGACGGGATTTGTGAT CGGTATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6256:1280..1486-

>mRNA_P-wetherbeei_contig6256.2.1 ID=mRNA_P-wetherbeei_contig6256.2.1|Name=mRNA_P-wetherbeei_contig6256.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=201bp|location=Sequence derived from alignment at P-wetherbeei_contig6256:1280..1486- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACCGAATTTGCTCGCGCTGTGCTGTGGTCCTTTGTCGCCGCTAT
CGCCATGGGCATCAGCATGGGGATGGTAATCAAGATATACGACTTCCTGA
CCCCGGGGCTCGACGAGCTTGACGAGTTGCGCAAGGGCAACGTCGCCGTC
GGTATTGTCGTAGGCTGTGTGATTCTCGCGACGGGATTTGTGATCGGTAT
G
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