mRNA_P-wetherbeei_contig6245.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6245.2.1
Unique NamemRNA_P-wetherbeei_contig6245.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6245.2.1 vs. uniprot
Match: D7FWJ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWJ1_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 6.920e-20
Identity = 39/58 (67.24%), Postives = 50/58 (86.21%), Query Frame = 1
Query:   25 RLGFQGDFDAMLQYIEDDGDVNKCDREHNTPLHWACQESHYEIVGVLMSRGAKVEHVN 198
            +   QGD DA+LQYI+D+GDVN+ DR++NTPLHWACQESH++IVGVLMSR + V+ VN
Sbjct:   30 KAAMQGDLDALLQYIDDNGDVNQRDRDNNTPLHWACQESHFDIVGVLMSRNSAVDPVN 87          
BLAST of mRNA_P-wetherbeei_contig6245.2.1 vs. uniprot
Match: A0A835Z0Q5_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0Q5_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.570e-16
Identity = 37/58 (63.79%), Postives = 45/58 (77.59%), Query Frame = 1
Query:   25 RLGFQGDFDAMLQYIEDDGDVNKCDREHNTPLHWACQESHYEIVGVLMSRGAKVEHVN 198
            +    GD DA+L YI++ GDVN  D  +NTPLHWACQESH++IVGVLMSRGA V+ VN
Sbjct:    8 KAATSGDLDAILTYIDEGGDVNCRDVNNNTPLHWACQESHFDIVGVLMSRGAHVDPVN 65          
BLAST of mRNA_P-wetherbeei_contig6245.2.1 vs. uniprot
Match: A0A836C8I0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8I0_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 2.260e-13
Identity = 30/44 (68.18%), Postives = 37/44 (84.09%), Query Frame = 1
Query:   40 GDFDAMLQYIEDDGDVNKCDREHNTPLHWACQESHYEIVGVLMS 171
            GD DA+L +I++ GDVN  D  +NTPLHWACQESH++IVGVLMS
Sbjct:   17 GDLDAILTFIDEGGDVNCRDANNNTPLHWACQESHFDIVGVLMS 60          
BLAST of mRNA_P-wetherbeei_contig6245.2.1 vs. uniprot
Match: D7G8Q9_ECTSI (Ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8Q9_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 3.400e-5
Identity = 24/48 (50.00%), Postives = 28/48 (58.33%), Query Frame = 1
Query:   40 GDFDAMLQYIEDDGDVNKCDREHNTPLHWACQESHYEIVGVLMSRGAK 183
            G    +  +I   GDVNK DREH +PL WAC   H EIV  L+  GAK
Sbjct:   16 GKLQKVQDFIAKGGDVNKPDREHCSPLMWACWGGHVEIVKRLLDEGAK 63          
BLAST of mRNA_P-wetherbeei_contig6245.2.1 vs. uniprot
Match: Q4L0H4_AGAAM (Membrane acyl-CoA binding protein n=1 Tax=Agave americana TaxID=39510 RepID=Q4L0H4_AGAAM)

HSP 1 Score: 49.3 bits (116), Expect = 4.480e-5
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 1
Query:   37 QGDFDAMLQYIEDDGDVNKCDREHNTPLHWACQESHYEIVGVLMSRGA 180
            +G+ D +L++IE+   VN  D E  TPLHWA    H+ +V +L+SR A
Sbjct:  236 EGEADNLLRHIENGVPVNSRDSEGRTPLHWAVDRGHFNVVEILLSRNA 283          
BLAST of mRNA_P-wetherbeei_contig6245.2.1 vs. uniprot
Match: UPI00098E0523 (LOW QUALITY PROTEIN: acyl-CoA-binding domain-containing protein 1-like n=1 Tax=Asparagus officinalis TaxID=4686 RepID=UPI00098E0523)

HSP 1 Score: 48.5 bits (114), Expect = 8.370e-5
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1
Query:   37 QGDFDAMLQYIEDDGDVNKCDREHNTPLHWACQESHYEIVGVLMSRGA 180
            +G+ + +L++IE+D  VN  D E  TPLHWA    H+ +V +L++R A
Sbjct:  226 EGEAENLLRHIENDVPVNSRDSEGRTPLHWAVDRGHFNVVELLLNRNA 273          
BLAST of mRNA_P-wetherbeei_contig6245.2.1 vs. uniprot
Match: A0A1Y3CPD7_9GAMM (Uncharacterized protein n=3 Tax=Acinetobacter TaxID=469 RepID=A0A1Y3CPD7_9GAMM)

HSP 1 Score: 46.6 bits (109), Expect = 8.650e-5
Identity = 22/51 (43.14%), Postives = 30/51 (58.82%), Query Frame = 1
Query:   40 GDFDAMLQYIEDDGDVNKCDREHNTPLHWACQESHYEIVGVLMSRGAKVEH 192
            GD D + Q I D  DVN  D E  + LH A +  H E+V +L+S+GA + H
Sbjct:   28 GDIDQVEQGINDGLDVNSADEEGYSALHAAAENDHLEVVKLLISKGANINH 78          
BLAST of mRNA_P-wetherbeei_contig6245.2.1 vs. uniprot
Match: A0A5P1FNK3_ASPOF (ACB domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1FNK3_ASPOF)

HSP 1 Score: 48.5 bits (114), Expect = 8.720e-5
Identity = 20/48 (41.67%), Postives = 32/48 (66.67%), Query Frame = 1
Query:   37 QGDFDAMLQYIEDDGDVNKCDREHNTPLHWACQESHYEIVGVLMSRGA 180
            +G+ + +L++IE+D  VN  D E  TPLHWA    H+ +V +L++R A
Sbjct:  646 EGEAENLLRHIENDVPVNSRDSEGRTPLHWAVDRGHFNVVELLLNRNA 693          
BLAST of mRNA_P-wetherbeei_contig6245.2.1 vs. uniprot
Match: A0A7J7CDK3_TRIWF (GA-binding protein subunit beta-2 n=1 Tax=Tripterygium wilfordii TaxID=458696 RepID=A0A7J7CDK3_TRIWF)

HSP 1 Score: 47.0 bits (110), Expect = 9.240e-5
Identity = 21/47 (44.68%), Postives = 30/47 (63.83%), Query Frame = 1
Query:   58 LQYIEDDGDVNKCDREHNTPLHWACQESHYEIVGVLMSRGAKVEHVN 198
            +Q++E+D  +N C+ E NTPLHWAC     E+V  L+  GA V  +N
Sbjct:   49 IQWVEED--LNACNVEKNTPLHWACLNGQIEVVKKLILAGANVSALN 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6245.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FWJ1_ECTSI6.920e-2067.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z0Q5_9STRA1.570e-1663.79Ankyrin repeat-containing domain protein n=1 Tax=T... [more]
A0A836C8I0_9STRA2.260e-1368.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D7G8Q9_ECTSI3.400e-550.00Ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 Re... [more]
Q4L0H4_AGAAM4.480e-543.75Membrane acyl-CoA binding protein n=1 Tax=Agave am... [more]
UPI00098E05238.370e-541.67LOW QUALITY PROTEIN: acyl-CoA-binding domain-conta... [more]
A0A1Y3CPD7_9GAMM8.650e-543.14Uncharacterized protein n=3 Tax=Acinetobacter TaxI... [more]
A0A5P1FNK3_ASPOF8.720e-541.67ACB domain-containing protein n=2 Tax=Asparagus of... [more]
A0A7J7CDK3_TRIWF9.240e-544.68GA-binding protein subunit beta-2 n=1 Tax=Triptery... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6245contigP-wetherbeei_contig6245:3222..3434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FWJ1
PFAMsAnk,Ank_2,Ank_3,Ank_4
Model size213
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.13e-20
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Descriptionspectrin binding
Cds size213
COG categoryI
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186899.8710291-CDS-P-wetherbeei_contig6245:3221..34341683186899.8710291-CDS-P-wetherbeei_contig6245:3221..3434Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6245 3222..3434 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6245.2.1prot_P-wetherbeei_contig6245.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6245 3222..3434 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6245.2.1

>prot_P-wetherbeei_contig6245.2.1 ID=prot_P-wetherbeei_contig6245.2.1|Name=mRNA_P-wetherbeei_contig6245.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=71bp
APCPFTHCRLGFQGDFDAMLQYIEDDGDVNKCDREHNTPLHWACQESHYE
IVGVLMSRGAKVEHVNVTNGF
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mRNA from alignment at P-wetherbeei_contig6245:3222..3434+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6245.2.1 ID=mRNA_P-wetherbeei_contig6245.2.1|Name=mRNA_P-wetherbeei_contig6245.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig6245:3222..3434+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCCCTGTCCCTTCACACATTGTCGCTTGGGTTTTCAGGGCGATTTTGA CGCCATGCTGCAGTATATCGAAGATGACGGCGATGTGAACAAGTGCGACC GCGAACACAATACTCCTCTCCACTGGGCATGCCAAGAGAGCCATTATGAA ATCGTCGGCGTGCTCATGTCGCGCGGAGCCAAGGTAGAGCATGTGAATGT CACCAATGGCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6245:3222..3434+

>mRNA_P-wetherbeei_contig6245.2.1 ID=mRNA_P-wetherbeei_contig6245.2.1|Name=mRNA_P-wetherbeei_contig6245.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=213bp|location=Sequence derived from alignment at P-wetherbeei_contig6245:3222..3434+ (Phaeothamnion wetherbeei SAG_119_79)
GCCCCCTGTCCCTTCACACATTGTCGCTTGGGTTTTCAGGGCGATTTTGA
CGCCATGCTGCAGTATATCGAAGATGACGGCGATGTGAACAAGTGCGACC
GCGAACACAATACTCCTCTCCACTGGGCATGCCAAGAGAGCCATTATGAA
ATCGTCGGCGTGCTCATGTCGCGCGGAGCCAAGGTAGAGCATGTGAATGT
CACCAATGGCTTC
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