mRNA_P-wetherbeei_contig6243.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6243.1.2
Unique NamemRNA_P-wetherbeei_contig6243.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6243.1.2 vs. uniprot
Match: A0A6H5L3J3_9PHAE (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3J3_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 1.780e-54
Identity = 207/662 (31.27%), Postives = 267/662 (40.33%), Query Frame = 3
Query:  744 SPVHCTSSYDANDPSEDRSTVLSRPELGVHIFLVCDGHGGSRAAAWVVQHMPSLLLGRLLALPSA------------DLNGGESEXXXXXXXXXXXRGVAALEEAAVKAVLIESFLETDRTFLAQLDPEADGARGVLNAGCCVALAMLVAHRLFVAHVGDCRIVLGT----KRPPTALRHGGAGSGAAGGAARRLASSPMREGAGSSTPRKAISGGSGSKNRATGADPSRSTSSSNDRSAPGKAADSGGXXXXXXXRSANGSSRRTSPTATFRPKFATGSPPTAAAAAAGXXXXXXXXXXXXXXXXXXXSQRRQTRASAAAPSLFAVPLSDDHNCFNASEVALVLERSRDPNAIRSSRNDQWKGAKALQRVAGSLAITRAIGDAYLKGDGCIKKAGNGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXGSASTXXXXXXXXXXXXXXXXXXXXLGGCLGNARXXXXXXXXXXXXXXSGIGALPYITAEPEVSAADLAPGDRFLVLATDGVWEQATNRDVIEWVEKA-ASRCGRGGVRGGPANGGXXXXXXXXXXXXXXXXXXXXXXXXXDSSGCSANXXXXXXXXXXXXXXSADXXXXXXXXXXXASSSDVVVQAVLQKTAQAHGMSLAELKRLCVGPQRRGLHDDITAMVVHLNF*PPPHRP 2678
            +P H T+ Y+AN+P+EDR   LS   LG+ ++ VCDGHGGSRAA +V  ++ + +L R+ ++ +A            D  GG  +               A  EA ++  L ++F   D  F+AQLDP  +  RG +NAGCCV LA+LV  +LF+AHVGDCR+VLGT    + PP  L             A+   S   R  +G    ++ +    G +  + G                      GGXXXXXXX    G  R              GSP  AA AAAG                                 L A+ LS DHNC +A EVALV  RS D NAIR+SRND+WKGA+A++RVAGSLA+TRAIGDAYLK                                                                                         G+   PYITAEPEV+  +L   DRFLVLA+DGVWEQ +N + ++ V  A AS  G  G R                                                      SA              SSD +V  VL ++AQ+HGMS+  L+ L  G  RR LHDD+ A VVH    PP   P
Sbjct:  972 TPWHHTTVYEANNPTEDRHAELSHDALGIKVYCVCDGHGGSRAAQFVCDNLAADVLARVESIVAAAAPAPARGRGGSDAGGGHDDR--------------AGREAQIRLSLADAFTSCDEQFIAQLDPTKN--RGYINAGCCVVLALLVRSQLFLAHVGDCRVVLGTTDAARFPPDLLS-----------TAKNTTSLSPRNSSG----KEQVGAAGGIRGASVG---------------------KGGXXXXXXXXXXAGPRR-------------VGSPLRAAGAAAG--------------------------------ELKAIALSRDHNCDDADEVALVRARSGDDNAIRASRNDEWKGARAIKRVAGSLAVTRAIGDAYLK------------------------------------------------------------------------------RAVFSFSPYKEGV---PYITAEPEVTVVELTSKDRFLVLASDGVWEQVSNEEAVQCVSGALASASGATGRR----------------------------------------------------QRSAASRTAGGSGGAVPFSSDALVDFVLARSAQSHGMSVPALRALPRGSSRRMLHDDVCATVVHFTPAPPQQAP 1403          
BLAST of mRNA_P-wetherbeei_contig6243.1.2 vs. uniprot
Match: D8LJY7_ECTSI (PPM-type phosphatase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJY7_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 4.720e-54
Identity = 212/658 (32.22%), Postives = 272/658 (41.34%), Query Frame = 3
Query:  747 PVHCTSSYDANDPSEDRSTVLSRPELGVHIFLVCDGHGGSRAAAWVVQHMPSLLLGRLLALPSA------------DLNGGESEXXXXXXXXXXXRGVAALEEAAVKAVLIESFLETDRTFLAQLDPEADGARGVLNAGCCVALAMLVAHRLFVAHVGDCRIVLGTKRPPTALRHGGAGSGAAGGAARRLASSPMREGAGSSTPRKAISGGSGSKNRATGADPSRSTSSSNDRSAPGKAADSGGXXXXXXXRSANGSSRRTSPTATFRPKFATGSPPTAAAAAAGXXXXXXXXXXXXXXXXXXXSQRRQTRASAAAPS-LFAVPLSDDHNCFNASEVALVLERSRDPNAIRSSRNDQWKGAKALQRVAGSLAITRAIGDAYLKGDGCIKKAGNGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXGSASTXXXXXXXXXXXXXXXXXXXXLGGCLGNARXXXXXXXXXXXXXXSGIGALPYITAEPEVSAADLAPGDRFLVLATDGVWEQATNRDVIEWVEKA-ASRCGRGGVRGGPANGGXXXXXXXXXXXXXXXXXXXXXXXXXDSSGCSANXXXXXXXXXXXXXXSADXXXXXXXXXXXASSSDVVVQAVLQKTAQAHGMSLAELKRLCVGPQRRGLHDDITAMVVHLNF*PPPHRP 2678
            P H TS Y+AN+P+EDR   LS   LG+ ++ VCDGHGGSRAA +V  ++ + +L R+ ++ +A            D  GG+ +               A  EA ++  L ++F   D  F+AQLDP  +  RG +NAGCCV LA+LV  +LF+AHVGDCR+VLGT                    A R     +     + +P    S G G    A G              A G+             R + G     + TAT  P+   GSP                                  RA+ AA S L A+ LS DHNC +A EVALV  RS D NAIR+SRND+WKGA+A++RVAGSLA+TRAIGDAYLK                                                                                         G+   PYITAEPEV+  +L   DRFLVLA+DGVWEQ +N + ++ V  A AS  G  G R                                                  XXXX   XXXXXXXX     +SD +V  VL ++AQ+HGMS+  L+ L  G  RR LHDD+ A VVH    PP   P
Sbjct:  826 PWHHTSVYEANNPTEDRHAELSHDALGIKVYCVCDGHGGSRAAQFVCDNLAADVLTRVESIEAAAAPATARGRGGSDAGGGDDDR--------------AGREAEIRVSLADAFTSCDEQFIAQLDPTKN--RGYINAGCCVVLALLVRSQLFLAHVGDCRVVLGTTD------------------AARFPPDLLSTAKNTPSPSPPSSSGKGRVGAAGGXXXXXXXXXXXXXPAAGRG------------RCSKGGGGAATATATAGPRRV-GSP---------------------------------LRAAGAADSELKAIALSRDHNCDDADEVALVRARSGDDNAIRASRNDEWKGARAIKRVAGSLAVTRAIGDAYLK------------------------------------------------------------------------------RAVFSFSPYKEGV---PYITAEPEVTVVELTSKDRFLVLASDGVWEQVSNEEAVQCVSGALASASGSMGRR-----------------------------------------------QRSXXXXXXXXXXXXXXXGAVPFTSDALVDFVLARSAQSHGMSVPALRALPRGSSRRMLHDDVCATVVHFTPAPPQQAP 1275          
BLAST of mRNA_P-wetherbeei_contig6243.1.2 vs. uniprot
Match: A0A7S3YK57_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YK57_HETAK)

HSP 1 Score: 91.3 bits (225), Expect = 3.000e-16
Identity = 62/207 (29.95%), Postives = 81/207 (39.13%), Query Frame = 3
Query: 1641 RASAAAPSLFAVPLSDDHNCFNASEVALVLERSRDPNAIRSSRNDQWKGAKALQRVAGSLAITRAIGDAYLKGDGCIKKAGNGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXGSASTXXXXXXXXXXXXXXXXXXXXLGGCLGNARXXXXXXXXXXXXXXSGIGALPYITAEPEVSAADLAPGDRFLVLATDGVWEQATNRDVIEWV 2261
            R +A +  + AV  + DH   N+ E + V  RSRDP A+R S  D+W+G  AL RVAGSLA+TRAIGD YLK                                                                                             +PYITAEPE+S  DL   D F+V+ATDG+WE ATN ++I ++
Sbjct:    8 RRAAVSQKVAAVAFTQDHTARNSQERSAVEARSRDPQALRPSPGDRWRGRGALDRVAGSLAVTRAIGDGYLK---------------------------------------------------------------------------------KPELSIPPYKDFVPYITAEPEISTYDLTSDDAFIVVATDGIWELATNEEIISFI 133          
BLAST of mRNA_P-wetherbeei_contig6243.1.2 vs. uniprot
Match: M4BRT0_HYAAE (PPM-type phosphatase domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BRT0_HYAAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.550e-13
Identity = 68/161 (42.24%), Postives = 84/161 (52.17%), Query Frame = 3
Query:  753 HCTSSYDANDPSEDRST-VLSRPELGVHIFLVCDGHGGSRAAAWVVQHMPSLLLGRLLALPSADLNGGESEXXXXXXXXXXXRGVAALEEAAVKAVLIESFLETDRTF---LAQLDPEADGARGVLNAGCCVALAMLVAHRLFVAHVGDCRIVLGTKRPPT 1223
            HCTS Y AN PSEDRS  V+   + GV I  V DGHGGSRA  +V+Q M      R +   +       S  XXXXXXXXXX          V A++  +F  +D  F   L  LDP    ++G  NAG C  +A+ +   L VA+VGDC  VLG K   T
Sbjct:  268 HCTSEYQANSPSEDRSVNVVKSTDTGVQINAVFDGHGGSRAVEYVMQTMC-----REVTRTNTGQCASCSHLXXXXXXXXXXXXXXXXXXXEVHAIVDSAFSSSDEKFKQSLLALDPSIRMSKGYCNAGACAVIALFIHKVLCVANVGDCAAVLGKKNKET 423          
BLAST of mRNA_P-wetherbeei_contig6243.1.2 vs. uniprot
Match: A0A7S2FF69_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FF69_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 3.490e-12
Identity = 65/219 (29.68%), Postives = 85/219 (38.81%), Query Frame = 3
Query: 1629 RRQTRASAAAPSLFAVPLSDDHNCFNASEVALVLERS-RDPNAIRSSRNDQWKGAKALQRVAGSLAITRAIGDAYLKGDGCIKKAGNGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXGSASTXXXXXXXXXXXXXXXXXXXXLGGCLGNARXXXXXXXXXXXXXXSGIGALPYITAEPEVSAADLA-PGDRFLVLATDGVWEQATNRDVIEWVEKAASR 2279
            RR  R SA   ++ +V LS DH C++  E  LV  R   DPN IR SR     G + ++RVAGSLA+TRAIGD YLK DG      +                                                                                +  LPYITA P  ++  L  P D F+V+ +DGVW+ ATN DV+ W+ +  SR
Sbjct:   71 RRSVRRSAMKAAVRSVALSKDHTCYDRDEEKLVRARCVNDPNPIRGSRPS---GGRQIKRVAGSLAVTRAIGDLYLK-DGRFSSLPH--------------------------------------------------------------------------------VNHLPYITATPATASRRLNHPHDLFIVIGSDGVWDNATNDDVVGWILEHQSR 205          
BLAST of mRNA_P-wetherbeei_contig6243.1.2 vs. uniprot
Match: A0A662Y5V0_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y5V0_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 3.320e-11
Identity = 42/74 (56.76%), Postives = 49/74 (66.22%), Query Frame = 3
Query: 1641 RASAAAPSLFAVPLSDDHNCFNASEVALVLERSRDPNAIRSSRNDQWKGAKA--LQRVAGSLAITRAIGDAYLK 1856
            R S     L AV +S DH+C N  E  LV ERSRD NAIR S++DQ  G+    ++RVAGSLAITRA GD YLK
Sbjct:   89 RVSKETGGLQAVEVSADHSCNNPQEARLVTERSRDRNAIRLSKDDQANGSNGFGVKRVAGSLAITRAFGDFYLK 162          
BLAST of mRNA_P-wetherbeei_contig6243.1.2 vs. uniprot
Match: A0A662Y1U2_9STRA (PPM-type phosphatase domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y1U2_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 4.810e-11
Identity = 42/74 (56.76%), Postives = 50/74 (67.57%), Query Frame = 3
Query: 1641 RASAAAPSLFAVPLSDDHNCFNASEVALVLERSRDPNAIRSSRNDQWKGAKA--LQRVAGSLAITRAIGDAYLK 1856
            R S     L AV +S DH+C N  E  LV+ERSRD NAIR S++DQ  G+    ++RVAGSLAITRA GD YLK
Sbjct:  189 RVSKETGGLQAVEVSVDHSCNNVQEARLVVERSRDRNAIRLSKDDQANGSNGFGVKRVAGSLAITRAFGDFYLK 262          
BLAST of mRNA_P-wetherbeei_contig6243.1.2 vs. uniprot
Match: A0A2D4BQA1_PYTIN (PPM-type phosphatase domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BQA1_PYTIN)

HSP 1 Score: 73.2 bits (178), Expect = 5.350e-11
Identity = 40/64 (62.50%), Postives = 47/64 (73.44%), Query Frame = 3
Query: 1680 LSDDHNCFNASEVALVLERSRDPNAIRSSRNDQ----WKGAK-ALQRVAGSLAITRAIGDAYLK 1856
            LS DHNC N+ EV LVLERSRD NAIR+S++DQ      G    ++RVAGSLA+TRA GD YLK
Sbjct:   84 LSVDHNCGNSDEVKLVLERSRDRNAIRTSKDDQNLASINGVNFGVKRVAGSLAVTRAFGDFYLK 147          
BLAST of mRNA_P-wetherbeei_contig6243.1.2 vs. uniprot
Match: K3X6Z5_GLOUD (PPM-type phosphatase domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6Z5_GLOUD)

HSP 1 Score: 77.8 bits (190), Expect = 5.650e-11
Identity = 60/198 (30.30%), Postives = 79/198 (39.90%), Query Frame = 3
Query: 1680 LSDDHNCFNASEVALVLERSRDPNAIRSSRNDQWKGAKA--LQRVAGSLAITRAIGDAYLKGDGCIKKAGNGGGSGSXXXXXXXXXXXXXXXXXXXXXXXXGSASTXXXXXXXXXXXXXXXXXXXXLGGCLGNARXXXXXXXXXXXXXXSGIGALPYITAEPEVSAADLAPGDRFLVLATDGVWEQATNRDVIEWVEK 2267
            LS DHNC N+ E+ LVLERSRD N IR S++DQ  GA    ++RVAGSLA+TRA GD YLK +                                         ST                                                +PYIT EP VS   L   +++L+LA+DG+WE  T  + ++ V+K
Sbjct:  394 LSVDHNCTNSDEIRLVLERSRDRNPIRLSKDDQASGAGGFGVKRVAGSLAVTRAFGDFYLKSE---------------------------------------ELSTPPFKSK------------------------------------------VPYITVEPSVSINQLDGTEKYLILASDGLWEVLTPDEAVQIVDK 510          
BLAST of mRNA_P-wetherbeei_contig6243.1.2 vs. uniprot
Match: A0A8K1CNJ7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNJ7_PYTOL)

HSP 1 Score: 75.9 bits (185), Expect = 2.500e-10
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 3
Query: 1671 AVPLSDDHNCFNASEVALVLERSRDPNAIRSSRNDQWKGAK----ALQRVAGSLAITRAIGDAYLK 1856
            A  L+ +HNC NA+E+ LVLERSRD NAIR S+++Q  GA      ++RVAGSLA+TRA GD YLK
Sbjct:  423 AQELTVEHNCKNATEIRLVLERSRDRNAIRYSKDEQSNGANQGGYGIKRVAGSLAVTRAFGDFYLK 488          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6243.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3J3_9PHAE1.780e-5431.27PPM-type phosphatase domain-containing protein n=1... [more]
D8LJY7_ECTSI4.720e-5432.22PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S3YK57_HETAK3.000e-1629.95Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
M4BRT0_HYAAE1.550e-1342.24PPM-type phosphatase domain-containing protein n=1... [more]
A0A7S2FF69_9STRA3.490e-1229.68Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A662Y5V0_9STRA3.320e-1156.76PPM-type phosphatase domain-containing protein n=1... [more]
A0A662Y1U2_9STRA4.810e-1156.76PPM-type phosphatase domain-containing protein n=1... [more]
A0A2D4BQA1_PYTIN5.350e-1162.50PPM-type phosphatase domain-containing protein (Fr... [more]
K3X6Z5_GLOUD5.650e-1130.30PPM-type phosphatase domain-containing protein n=1... [more]
A0A8K1CNJ7_PYTOL2.500e-1059.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6243contigP-wetherbeei_contig6243:2..3195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LJY7
PFAMsPP2C
Model size2995
Max annot lvl2759|Eukaryota
KEGG koko:K01102
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.32e-54
EggNOG OGsCOG0631@1|root,KOG0700@2759|Eukaryota
EC3.1.3.43
Descriptionprotein serine/threonine phosphatase activity
Cds size2529
COG categoryT
BRITEko00000,ko01000,ko01009
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186899.6909857-UTR-P-wetherbeei_contig6243:1..1321683186899.6909857-UTR-P-wetherbeei_contig6243:1..132Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6243 2..132 +
1683186899.7330325-UTR-P-wetherbeei_contig6243:2860..31951683186899.7330325-UTR-P-wetherbeei_contig6243:2860..3195Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6243 2861..3195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186899.7058153-CDS-P-wetherbeei_contig6243:132..10321683186899.7058153-CDS-P-wetherbeei_contig6243:132..1032Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6243 133..1032 +
1683186899.716604-CDS-P-wetherbeei_contig6243:1231..28601683186899.716604-CDS-P-wetherbeei_contig6243:1231..2860Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6243 1232..2860 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6243.1.2prot_P-wetherbeei_contig6243.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6243 133..2860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6243.1.2

>prot_P-wetherbeei_contig6243.1.2 ID=prot_P-wetherbeei_contig6243.1.2|Name=mRNA_P-wetherbeei_contig6243.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=843bp
MGDAVEAHHSYSGLSAPPIKLHHTAEESGSVEALKLDYVQTSRGREKQSD
DKDDEGEAAIGATGGGSGNAADNGSDSKNCRNGAGRSMTAGSSSTSSEQK
QEHRPDRTPDSSNSDIACARCPEIDDGGGSCGSSSGKPQTSAGRGRKRER
CHLSSIRDDDSSCEGERTDEENPAAAAAAAVMAAAAGTLPGPLPGPTLFP
PPAPSPVHCTSSYDANDPSEDRSTVLSRPELGVHIFLVCDGHGGSRAAAW
VVQHMPSLLLGRLLALPSADLNGGESEGGSSGGKDGGGRGVAALEEAAVK
AVLIESFLETDRTFLAQLDPEADGARGVLNAGCCVALAMLVAHRLFVAHV
GDCRIVLGTKRPPTALRHGGAGSGAAGGAARRLASSPMREGAGSSTPRKA
ISGGSGSKNRATGADPSRSTSSSNDRSAPGKAADSGGSGGGTGDRSANGS
SRRTSPTATFRPKFATGSPPTAAAAAAGAAASPGVSPSLSLSPSLSLSQR
RQTRASAAAPSLFAVPLSDDHNCFNASEVALVLERSRDPNAIRSSRNDQW
KGAKALQRVAGSLAITRAIGDAYLKGDGCIKKAGNGGGSGSSGSGVNGSG
SSGGGSGGGSDGGGGGSASTSASSNGGQGASSSNGGGGGGLGGCLGNARG
GGFGYTGGGVGGGSGIGALPYITAEPEVSAADLAPGDRFLVLATDGVWEQ
ATNRDVIEWVEKAASRCGRGGVRGGPANGGGHEGGGRGESAAGGSGNGSG
SGNGSDSSGCSANGDGVSGGNGGGNSGSADNGGHGSGNGGSASSSDVVVQ
AVLQKTAQAHGMSLAELKRLCVGPQRRGLHDDITAMVVHLNF*
back to top

mRNA from alignment at P-wetherbeei_contig6243:2..3195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6243.1.2 ID=mRNA_P-wetherbeei_contig6243.1.2|Name=mRNA_P-wetherbeei_contig6243.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3194bp|location=Sequence derived from alignment at P-wetherbeei_contig6243:2..3195+ (Phaeothamnion wetherbeei SAG_119_79)
CCCCAGATTCCCTCCTTTGCCTTCCCTCTCTTTCGGATTGGGAGGCGAGA CCGTCCAGCGGAGGCCGTGAGCTGGCGTTTGAGAAGACCTTCGTAAAACG GATTTGAAGACGGGTTTCCGAGATACCACCGATGGGAGACGCCGTTGAGG CGCACCACAGTTATAGTGGGCTTAGTGCCCCTCCAATCAAGCTCCACCAC ACTGCAGAGGAATCCGGATCCGTCGAGGCTCTCAAGTTGGACTACGTTCA GACCTCTCGTGGCAGAGAGAAACAGAGCGACGACAAAGATGATGAGGGTG AGGCCGCCATTGGTGCCACTGGCGGGGGCAGCGGGAATGCCGCCGACAAT GGCAGCGACAGCAAGAACTGCAGGAACGGCGCTGGACGCAGCATGACCGC CGGCTCGAGCAGCACGAGCAGCGAGCAGAAGCAAGAGCACCGCCCCGACA GGACCCCGGACAGCAGCAACAGTGACATTGCCTGCGCGCGCTGCCCCGAG ATTGACGACGGCGGCGGCAGCTGCGGCAGCAGCAGTGGCAAACCTCAGAC ATCGGCGGGGCGGGGCAGGAAGCGCGAGCGCTGCCACCTGTCGTCTATTC GCGACGACGACAGCTCTTGCGAAGGCGAAAGAACCGACGAGGAAAACCCG GCGGCTGCGGCGGCAGCGGCGGTAATGGCGGCAGCAGCTGGCACGCTGCC GGGTCCACTGCCGGGTCCAACCCTGTTCCCGCCGCCGGCACCGTCGCCTG TCCACTGCACGAGTAGCTACGACGCCAACGACCCGTCTGAAGACCGCTCT ACGGTTCTGTCGCGCCCGGAATTGGGCGTGCACATCTTTCTGGTTTGCGA CGGCCACGGCGGGAGCCGGGCGGCGGCATGGGTGGTGCAGCACATGCCGT CGCTGCTGCTGGGAAGGTTGCTGGCGCTGCCGAGCGCCGATCTCAACGGC GGCGAGAGCGAGGGCGGCAGCAGCGGCGGCAAGGACGGCGGCGGCAGGGG GGTGGCCGCGCTGGAAGAAGCTGCTGTGAAGGTGAGTGAGATCAAGGACA AGTCAGCCTCGCTTCGCTGCGTGCGCTGACTACTTCTAATTGTCCTTTTT CCGTTATATTGCCTCGCCTGCCCGGCATTCCCCGAAGGCGGTCACACCTC AGACCACGGAACGGGCAAACTGCCCCGTCGCTCTGTTCGTTTCTCCCGCT GCATCTTTCTTTCTCCTTTCTTTTGCGCAGGCCGTCCTGATCGAGTCCTT CCTGGAGACGGACCGGACCTTCCTGGCGCAGCTCGACCCCGAGGCGGACG GCGCCCGCGGTGTGCTCAACGCCGGCTGCTGCGTCGCGCTGGCGATGCTC GTGGCCCACCGCCTCTTCGTAGCGCACGTCGGCGACTGCCGCATCGTCCT CGGCACCAAGCGGCCGCCGACTGCGCTGCGCCACGGCGGCGCCGGCAGCG GCGCCGCTGGCGGTGCTGCGCGCCGTCTCGCTTCTTCGCCCATGCGCGAG GGCGCCGGCTCTTCGACTCCGCGCAAAGCAATCAGCGGCGGCAGCGGAAG CAAGAATCGTGCCACCGGAGCAGACCCTTCTCGCTCGACCAGCAGCAGCA ACGACCGATCCGCGCCGGGCAAGGCAGCTGATAGCGGCGGCAGCGGCGGC GGCACCGGCGACAGGAGCGCCAACGGGAGCAGCCGCCGCACGTCCCCTAC CGCAACATTTCGGCCGAAATTTGCGACCGGCAGCCCGCCCACGGCCGCCG CCGCTGCCGCTGGCGCCGCCGCCAGCCCGGGCGTGTCGCCGTCCCTTTCC CTGTCCCCGTCCCTGTCGCTGTCGCAGCGCCGACAGACCCGCGCCAGCGC CGCCGCTCCGTCGCTGTTTGCCGTGCCGCTCTCGGACGACCACAACTGCT TCAATGCCTCAGAGGTGGCGCTGGTGCTGGAGCGGAGCCGCGATCCCAAT GCCATCCGCTCGTCACGCAACGACCAGTGGAAGGGCGCCAAGGCGCTGCA GCGCGTGGCAGGCTCGCTGGCCATCACGCGTGCCATCGGTGACGCTTACC TGAAGGGCGATGGCTGCATAAAGAAAGCCGGCAACGGCGGCGGAAGCGGC AGTAGCGGCAGTGGCGTCAATGGCAGCGGAAGCAGTGGCGGCGGATCTGG CGGCGGCAGCGATGGTGGCGGCGGCGGCAGCGCTAGCACGAGCGCCAGCA GCAACGGCGGCCAAGGCGCCAGCAGCAGCAACGGAGGCGGTGGCGGCGGC TTGGGTGGCTGCTTGGGCAATGCTCGTGGCGGCGGCTTTGGTTACACTGG CGGCGGCGTCGGCGGCGGCAGCGGCATCGGCGCACTGCCCTACATCACGG CGGAGCCGGAGGTGAGCGCTGCCGACCTCGCGCCCGGCGATCGCTTCCTG GTGCTGGCGACCGACGGTGTCTGGGAGCAGGCTACCAACCGCGATGTCAT CGAGTGGGTGGAAAAGGCCGCTTCCCGGTGCGGCCGCGGCGGCGTCCGCG GCGGACCCGCCAATGGCGGCGGCCATGAAGGCGGTGGCCGCGGCGAATCC GCCGCCGGCGGCAGCGGCAATGGAAGTGGCAGTGGCAACGGCAGCGATAG CAGTGGCTGCAGTGCCAATGGCGACGGCGTTAGTGGCGGAAACGGCGGCG GCAACAGCGGCAGCGCCGATAACGGCGGCCACGGCAGCGGGAACGGCGGT TCGGCGAGCAGCAGCGACGTGGTGGTACAGGCCGTGCTGCAGAAGACGGC GCAGGCGCACGGCATGTCGCTGGCCGAGCTGAAGCGGCTGTGCGTCGGCC CGCAGCGCCGCGGCCTCCACGACGACATCACCGCCATGGTTGTCCACCTC AACTTTTGACCGCCGCCGCATCGGCCATCCTTTCGGTGCTCAGTTGGCCA GCCGACAGACTTGCTCCGGCCGCCGGCGTCGTTGCGGCAGCTTTCGAGGA AGGAGCAGATTGCGACGTTTGCGGCTGCCGCTGGCCGGCCAGACCGGAAG GAGGCAGCGGGCGCAACGGGTGCGGGGTAAGATATCGCCCAGCCGCTGGC TGCGCTACGGCACCTGCCTGAGGAAGTGGCTGCCACGGCGCGGAGAGGCG GCGCACAACAGCCCTTGTGCTCTCTTCGGAGCAACTATAGCCAACAGAGA TTCCCAACAAAGATTCTTGGGTATTGCAAATTCCTTACATCGGG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6243:2..3195+

>mRNA_P-wetherbeei_contig6243.1.2 ID=mRNA_P-wetherbeei_contig6243.1.2|Name=mRNA_P-wetherbeei_contig6243.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2529bp|location=Sequence derived from alignment at P-wetherbeei_contig6243:2..3195+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGAGACGCCGTTGAGGCGCACCACAGTTATAGTGGGCTTAGTGCCCC
TCCAATCAAGCTCCACCACACTGCAGAGGAATCCGGATCCGTCGAGGCTC
TCAAGTTGGACTACGTTCAGACCTCTCGTGGCAGAGAGAAACAGAGCGAC
GACAAAGATGATGAGGGTGAGGCCGCCATTGGTGCCACTGGCGGGGGCAG
CGGGAATGCCGCCGACAATGGCAGCGACAGCAAGAACTGCAGGAACGGCG
CTGGACGCAGCATGACCGCCGGCTCGAGCAGCACGAGCAGCGAGCAGAAG
CAAGAGCACCGCCCCGACAGGACCCCGGACAGCAGCAACAGTGACATTGC
CTGCGCGCGCTGCCCCGAGATTGACGACGGCGGCGGCAGCTGCGGCAGCA
GCAGTGGCAAACCTCAGACATCGGCGGGGCGGGGCAGGAAGCGCGAGCGC
TGCCACCTGTCGTCTATTCGCGACGACGACAGCTCTTGCGAAGGCGAAAG
AACCGACGAGGAAAACCCGGCGGCTGCGGCGGCAGCGGCGGTAATGGCGG
CAGCAGCTGGCACGCTGCCGGGTCCACTGCCGGGTCCAACCCTGTTCCCG
CCGCCGGCACCGTCGCCTGTCCACTGCACGAGTAGCTACGACGCCAACGA
CCCGTCTGAAGACCGCTCTACGGTTCTGTCGCGCCCGGAATTGGGCGTGC
ACATCTTTCTGGTTTGCGACGGCCACGGCGGGAGCCGGGCGGCGGCATGG
GTGGTGCAGCACATGCCGTCGCTGCTGCTGGGAAGGTTGCTGGCGCTGCC
GAGCGCCGATCTCAACGGCGGCGAGAGCGAGGGCGGCAGCAGCGGCGGCA
AGGACGGCGGCGGCAGGGGGGTGGCCGCGCTGGAAGAAGCTGCTGTGAAG
GCCGTCCTGATCGAGTCCTTCCTGGAGACGGACCGGACCTTCCTGGCGCA
GCTCGACCCCGAGGCGGACGGCGCCCGCGGTGTGCTCAACGCCGGCTGCT
GCGTCGCGCTGGCGATGCTCGTGGCCCACCGCCTCTTCGTAGCGCACGTC
GGCGACTGCCGCATCGTCCTCGGCACCAAGCGGCCGCCGACTGCGCTGCG
CCACGGCGGCGCCGGCAGCGGCGCCGCTGGCGGTGCTGCGCGCCGTCTCG
CTTCTTCGCCCATGCGCGAGGGCGCCGGCTCTTCGACTCCGCGCAAAGCA
ATCAGCGGCGGCAGCGGAAGCAAGAATCGTGCCACCGGAGCAGACCCTTC
TCGCTCGACCAGCAGCAGCAACGACCGATCCGCGCCGGGCAAGGCAGCTG
ATAGCGGCGGCAGCGGCGGCGGCACCGGCGACAGGAGCGCCAACGGGAGC
AGCCGCCGCACGTCCCCTACCGCAACATTTCGGCCGAAATTTGCGACCGG
CAGCCCGCCCACGGCCGCCGCCGCTGCCGCTGGCGCCGCCGCCAGCCCGG
GCGTGTCGCCGTCCCTTTCCCTGTCCCCGTCCCTGTCGCTGTCGCAGCGC
CGACAGACCCGCGCCAGCGCCGCCGCTCCGTCGCTGTTTGCCGTGCCGCT
CTCGGACGACCACAACTGCTTCAATGCCTCAGAGGTGGCGCTGGTGCTGG
AGCGGAGCCGCGATCCCAATGCCATCCGCTCGTCACGCAACGACCAGTGG
AAGGGCGCCAAGGCGCTGCAGCGCGTGGCAGGCTCGCTGGCCATCACGCG
TGCCATCGGTGACGCTTACCTGAAGGGCGATGGCTGCATAAAGAAAGCCG
GCAACGGCGGCGGAAGCGGCAGTAGCGGCAGTGGCGTCAATGGCAGCGGA
AGCAGTGGCGGCGGATCTGGCGGCGGCAGCGATGGTGGCGGCGGCGGCAG
CGCTAGCACGAGCGCCAGCAGCAACGGCGGCCAAGGCGCCAGCAGCAGCA
ACGGAGGCGGTGGCGGCGGCTTGGGTGGCTGCTTGGGCAATGCTCGTGGC
GGCGGCTTTGGTTACACTGGCGGCGGCGTCGGCGGCGGCAGCGGCATCGG
CGCACTGCCCTACATCACGGCGGAGCCGGAGGTGAGCGCTGCCGACCTCG
CGCCCGGCGATCGCTTCCTGGTGCTGGCGACCGACGGTGTCTGGGAGCAG
GCTACCAACCGCGATGTCATCGAGTGGGTGGAAAAGGCCGCTTCCCGGTG
CGGCCGCGGCGGCGTCCGCGGCGGACCCGCCAATGGCGGCGGCCATGAAG
GCGGTGGCCGCGGCGAATCCGCCGCCGGCGGCAGCGGCAATGGAAGTGGC
AGTGGCAACGGCAGCGATAGCAGTGGCTGCAGTGCCAATGGCGACGGCGT
TAGTGGCGGAAACGGCGGCGGCAACAGCGGCAGCGCCGATAACGGCGGCC
ACGGCAGCGGGAACGGCGGTTCGGCGAGCAGCAGCGACGTGGTGGTACAG
GCCGTGCTGCAGAAGACGGCGCAGGCGCACGGCATGTCGCTGGCCGAGCT
GAAGCGGCTGTGCGTCGGCCCGCAGCGCCGCGGCCTCCACGACGACATCA
CCGCCATGGTTGTCCACCTCAACTTTTGA
back to top