mRNA_P-wetherbeei_contig6231.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig6231.1.1 vs. uniprot
Match: A0A6H5KP27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP27_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.660e-39 Identity = 67/154 (43.51%), Postives = 101/154 (65.58%), Query Frame = 1
Query: 421 RTVEYDDCHLAPLEYGTRCLWIDLTPEAIETIHRRGLDLDAGVHAAAHALLGVTPLFLMCDAGDLGAVHVREHRRHPTPKKVVLFDRKPGGIGMAEALFRRRREVLLRAVQMVDTCGCAGGCIGCIFTHSCAGYNSQLDKAAGALLLRGALRTM 882
RT+E +C L PL+Y TR W+D+ A + GLDL+ G+HA HALL V PLFL+CDA D+ H R H P P+++++FD++PGG+G+++A+F R VL +A+++V+ C C GC+ CI H C GYN+ +DK A ++L ++ M
Sbjct: 1217 RTLERGECSLPPLQYATRAFWLDVGETARRRVEEEGLDLEGGIHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDKRPGGVGVSDAMFGCHRGVLSKALELVEGCPCPEGCLACIHDHGCTGYNAIIDKRAAVVILESLIQDM 1370
BLAST of mRNA_P-wetherbeei_contig6231.1.1 vs. uniprot
Match: D8LLG5_ECTSI (DEAD/DEAH box helicase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG5_ECTSI) HSP 1 Score: 154 bits (389), Expect = 1.320e-36 Identity = 62/137 (45.26%), Postives = 91/137 (66.42%), Query Frame = 1
Query: 421 RTVEYDDCHLAPLEYGTRCLWIDLTPEAIETIHRRGLDLDAGVHAAAHALLGVTPLFLMCDAGDLGAVHVREHRRHPTPKKVVLFDRKPGGIGMAEALFRRRREVLLRAVQMVDTCGCAGGCIGCIFTHSCAGYNSQ 831
R +E +C L PL+Y TR W+D+ A + GLDL+ G+HA HALL V PLFL+CDA D+ H R H P P+++++FDR+PGG+G+++A+F R VL +A+++V+ C C GC+ CI H C GYN++
Sbjct: 775 RVLERGECSLPPLQYATRAFWLDVGETARRRVEEEGLDLEGGIHAVGHALLAVVPLFLLCDAADVDCEHARPHHSRPQPQRILVFDRRPGGVGVSDAMFGCHRGVLSKALELVEGCPCPDGCLACIHDHGCTGYNAR 911
BLAST of mRNA_P-wetherbeei_contig6231.1.1 vs. uniprot
Match: A0A7S3NQ71_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NQ71_9STRA) HSP 1 Score: 134 bits (337), Expect = 6.800e-30 Identity = 61/147 (41.50%), Postives = 92/147 (62.59%), Query Frame = 1
Query: 448 LAPLEYGTRCLWIDLTPEAIETIHRRGLDLDAGVHAAAHALLGVTPLFLMCDAGDLGAVHVREHRRHPTPKKVVLFDRKPGGIGMAEALFRRRREVLLRAVQMVDTCGC--AGGCIGCIFTHSCAGYNSQLDKAAGALLLRGALRTM 882
L PLE+ TR +W+DL EAI I + LDL G+HA HA+L + PLF++CD D+ A HV ++ P P ++++FD +PGGIG+A A+FRR V+ A++++ C C GC C+F+ SC +N LD A ++ R L+ +
Sbjct: 726 LPPLEFITRGIWLDLPQEAIHEISQANLDLHHGIHACTHAILNIVPLFVVCDNTDVNAEHVYISQKRPRPARIIIFDTRPGGIGVAHAIFRRIYAVISEALRLITECPCHAQSGCPSCLFSASCTAHNLALDSRAAIIIFRAILKCL 872
BLAST of mRNA_P-wetherbeei_contig6231.1.1 vs. uniprot
Match: A0A8J2SSL9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SSL9_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.730e-29 Identity = 63/163 (38.65%), Postives = 98/163 (60.12%), Query Frame = 1
Query: 421 RTVEYDDCHLAPLEYGTRCLWIDLTPEAIETIHRRGLDLDAGVHAAAHALLGVTPLFLMCDAGDLGAVHVREHRRHPTPKKVVLFDRKPGGIGMAEALFRRRREVLLRAVQMVDTCGC--AGGCIGCIFTHSCAGYNSQLDKAAGALLLRGALRTMAEALSPV 903
+ +E + L PLE+ +R W+D+ AIE + LD +GVHAA HALL V PLF++ DA D+ HV + P P +++L+D +PGG+G A+ALFRR L +A +++ C C + GC C+ H+C+GYN+ LD+ A +++ L+ + PV
Sbjct: 847 KVLELKEFSLPPLEFDSRGTWVDVPSSAIEKMASLNLDARSGVHAANHALLIVAPLFVVADAADISTEHVYPRQHRPRPLRLILYDARPGGLGAADALFRRFHAALGQARRLLSECPCRFSSGCPACLHVHTCSGYNANLDRRAARIIVDAVLQELRSICQPV 1009
BLAST of mRNA_P-wetherbeei_contig6231.1.1 vs. uniprot
Match: A0A7S1UKF1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKF1_9STRA) HSP 1 Score: 127 bits (318), Expect = 1.510e-27 Identity = 60/153 (39.22%), Postives = 89/153 (58.17%), Query Frame = 1
Query: 421 RTVEYDDCHLAPLEYGTRCLWIDLTPEAIETIHRRGLDLDAGVHAAAHALLGVTPLFLMCDAGDLGAVH----VREHRRHPTPKKVVLFDRKPGGIGMAEALFRRRREVLLRAVQMVDTCGCAGGCIGCIFTHSCAGYNSQLDKAAGALLLRG 867
+ E +C L PLEY +R W D+ + + + G D +HAAAHA++ +TPL L+CD D+ +H V R P+P+++++FD++ GG G A A+FR +EVL RA +++ C C GC CI H C +N +DK G LLRG
Sbjct: 525 KCFESHECRLPPLEYRSRAWWADIPLDLKQELVEHGHDFQECIHAAAHAIVSITPLELLCDPSDIETLHGYISVTNSTR-PSPRRILIFDKQAGGNGTASAIFRHTKEVLRRARALMEACACENGCPSCIHHHMCYEFNEGMDKVGGVRLLRG 676
BLAST of mRNA_P-wetherbeei_contig6231.1.1 vs. uniprot
Match: A0A0A9JIR5_ARUDO (DUF1998 domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9JIR5_ARUDO) HSP 1 Score: 115 bits (289), Expect = 2.000e-26 Identity = 56/147 (38.10%), Postives = 83/147 (56.46%), Query Frame = 1
Query: 439 DCHLAPLEYGTRCLWIDLTPEAIETIHRRGLDLDAGVHAAAHALLGVTPLFLMCDAGDLGAVHVREHRRHPTPKKVVLFDRKPGGIGMAEALFRRRREVLLRAVQMVDTCGC--AGGCIGCIFTHSCAGYNSQLDKAAGALLLRGAL 873
+ +L P + ++ +W+ + T+ R L G HAA+HALL + PL +MC A DLG H P +++L+DR PGGIG+A E+LL A+++V TC C A GC CI + +C+ YN LDK A L+L+G +
Sbjct: 42 ELNLPPYSFDSQAVWVRIPHSVKLTVEERELQFRGGSHAASHALLNIVPLHMMCSASDLGTECANPHETRGIPDRILLYDRHPGGIGIATQAQMLFGELLLAALELVSTCNCTSAAGCPNCIQSLTCSEYNEVLDKEAATLILKGVI 188
BLAST of mRNA_P-wetherbeei_contig6231.1.1 vs. uniprot
Match: A0A3L6RXH5_PANMI (DUF1998 domain-containing protein n=1 Tax=Panicum miliaceum TaxID=4540 RepID=A0A3L6RXH5_PANMI) HSP 1 Score: 120 bits (300), Expect = 2.410e-26 Identity = 56/144 (38.89%), Postives = 82/144 (56.94%), Query Frame = 1
Query: 448 LAPLEYGTRCLWIDLTPEAIETIHRRGLDLDAGVHAAAHALLGVTPLFLMCDAGDLGAVHVREHRRHPTPKKVVLFDRKPGGIGMAEALFRRRREVLLRAVQMVDTCGCAG--GCIGCIFTHSCAGYNSQLDKAAGALLLRGAL 873
L + T+ W+ + I +R L GVHAA+HALL + PL +MC DLG + TP +++L+D+ PGGIG+A + E+L+ A+Q++ TCGC GC CI + +C GYN LDKAA L+L+G +
Sbjct: 222 LPSYSFDTQASWVSVPKSVRAAIEQRKLGFQGGVHAASHALLSIVPLHMMCSTADLGTQCAEPQQTSKTPDRILLYDKHPGGIGLASQVKLLFGELLVAALQLISTCGCTNLDGCPNCIQSFACGGYNKNLDKAAAVLILKGVI 365
BLAST of mRNA_P-wetherbeei_contig6231.1.1 vs. uniprot
Match: A0A446KS04_TRITD (DUF1998 domain-containing protein n=2 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446KS04_TRITD) HSP 1 Score: 117 bits (294), Expect = 1.170e-25 Identity = 60/152 (39.47%), Postives = 88/152 (57.89%), Query Frame = 1
Query: 415 LIRTVEYDDCHLAPLEYGTRCLWIDLTPEAIETIHRRGLDLDAGVHAAAHALLGVTPLFLMCDAGDLGAVHVREHRRHPTPKKVVLFDRKPGGIGMAEALFRRRREVLLRAVQMVDTCGCAG--GCIGCIFTHSCAGYNSQLDKAAGALLLR 864
++ TVE L P Y + +WI + A + R L+ G HAA+HALL + PL +MC A DLG V H P++++L+D+ PGGIG+A + + E+LL A+++V TC CA GC CI + +C+ YN LDK A L+L+
Sbjct: 213 ILDTVEL---RLPPYSYDSEAVWIRIPRSAKIAVEERKLEFRGGSHAASHALLNILPLHMMCSASDLGTECVNPHETRGMPERILLYDKHPGGIGLATQVKKLFGELLLAALELVSTCSCASASGCPNCIQSLTCSEYNEVLDKEAAILILK 361
BLAST of mRNA_P-wetherbeei_contig6231.1.1 vs. uniprot
Match: A0A446KS53_TRITD (Helicase C-terminal domain-containing protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446KS53_TRITD) HSP 1 Score: 120 bits (301), Expect = 1.460e-25 Identity = 61/155 (39.35%), Postives = 90/155 (58.06%), Query Frame = 1
Query: 415 LIRTVEYDDCHLAPLEYGTRCLWIDLTPEAIETIHRRGLDLDAGVHAAAHALLGVTPLFLMCDAGDLGAVHVREHRRHPTPKKVVLFDRKPGGIGMAEALFRRRREVLLRAVQMVDTCGCAG--GCIGCIFTHSCAGYNSQLDKAAGALLLRGAL 873
++ TVE L P Y + +WI + A + R L+ G HAA+HALL + PL +MC A DLG V H P++++L+D+ PGGIG+A + + E+LL A+++V TC CA GC CI + +C+ YN LDK A L+L+G +
Sbjct: 430 ILDTVEL---RLPPYSYDSEAVWIRIPRSAKIAVEERKLEFRGGSHAASHALLNILPLHMMCSASDLGTECVNPHETRGMPERILLYDKHPGGIGLATQVKKLFGELLLAALELVSTCSCASASGCPNCIQSLTCSEYNEVLDKEAAILILKGVI 581
BLAST of mRNA_P-wetherbeei_contig6231.1.1 vs. uniprot
Match: A0A0Q3RQM5_BRADI (Uncharacterized protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3RQM5_BRADI) HSP 1 Score: 120 bits (300), Expect = 3.740e-25 Identity = 58/144 (40.28%), Postives = 84/144 (58.33%), Query Frame = 1
Query: 448 LAPLEYGTRCLWIDLTPEAIETIHRRGLDLDAGVHAAAHALLGVTPLFLMCDAGDLGAVHVREHRRHPTPKKVVLFDRKPGGIGMAEALFRRRREVLLRAVQMVDTCGCAG--GCIGCIFTHSCAGYNSQLDKAAGALLLRGAL 873
L P Y + +WI + A T+ R LD G HAA+HALL + PL +MC A DLG V H P++++L+D+ PGGIG+A + E+LL A+ +V TC C+ GC CI + +C+ YN LDK A ++L+G +
Sbjct: 856 LPPYSYNSEAVWIRIPHSAKITVEERKLDFRGGSHAASHALLNIVPLHMMCSASDLGTECVNPHETRGMPERILLYDKHPGGIGIASQVKMLFGELLLAALDLVSTCSCSSSAGCPNCIQSLTCSEYNEVLDKKAAIIILKGVI 999 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6231.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig6231.1.1 >prot_P-wetherbeei_contig6231.1.1 ID=prot_P-wetherbeei_contig6231.1.1|Name=mRNA_P-wetherbeei_contig6231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=307bp MLVLSSTACSSPFNNVVPPALIRTVEYDDCHLAPLEYGTRCLWIDLTPEAback to top mRNA from alignment at P-wetherbeei_contig6231:703..2120- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig6231.1.1 ID=mRNA_P-wetherbeei_contig6231.1.1|Name=mRNA_P-wetherbeei_contig6231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1418bp|location=Sequence derived from alignment at P-wetherbeei_contig6231:703..2120- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig6231:703..2120- >mRNA_P-wetherbeei_contig6231.1.1 ID=mRNA_P-wetherbeei_contig6231.1.1|Name=mRNA_P-wetherbeei_contig6231.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=921bp|location=Sequence derived from alignment at P-wetherbeei_contig6231:703..2120- (Phaeothamnion wetherbeei SAG_119_79)back to top |