mRNA_P-wetherbeei_contig6218.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6218.3.1
Unique NamemRNA_P-wetherbeei_contig6218.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6218.3.1 vs. uniprot
Match: A0A485K2V1_9STRA (Aste57867_92 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K2V1_9STRA)

HSP 1 Score: 167 bits (422), Expect = 1.420e-42
Identity = 88/180 (48.89%), Postives = 122/180 (67.78%), Query Frame = 1
Query:  754 RTLRLGADARRVAAAPNAGGRSVVSEALSVEYFARRFGGHDVLCEMEISYWSPQWKKIDFIATIKDYRGGSCNRVGVSVTRAMGWPSAAHFTADSARRLLRKKLYGLVVARDGVSSAQRYTGSVLHVWCQNRRIAELMRQAFRRTARELSVTGNVLMLLTVAADLPAVFEDDFRLLGMAA 1293
            R  RLG DA  V   PNAGG+SVVSEALS+EY  + FG  DV+ EM+I YWSP WKK+D++ TI         R+ VSVTRAM + +   FT D AR LLRKKL+GLVVA+ GVS +QRYT S+LH+WCQ++ IA+ +  +++    EL +  NV+++ TVA +   +++++  L+  AA
Sbjct:  203 RAFRLGRDASLVLTEPNAGGQSVVSEALSMEYMHQLFGAVDVVTEMQIEYWSPNWKKVDYLCTIY------AERIAVSVTRAMKFKAWEAFTLDDARTLLRKKLFGLVVAKTGVSESQRYTKSILHIWCQSKAIADTIALSYKAIVAELEIEDNVILMATVAHE-DGIYDNNMTLVQAAA 375          
BLAST of mRNA_P-wetherbeei_contig6218.3.1 vs. uniprot
Match: A0A6G0X330_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X330_9STRA)

HSP 1 Score: 162 bits (410), Expect = 1.460e-42
Identity = 86/176 (48.86%), Postives = 116/176 (65.91%), Query Frame = 1
Query:  754 RTLRLGADARRVAAAPNAGGRSVVSEALSVEYFARRFGGHDVLCEMEISYWSPQWKKIDFIATIKDYRGGSCNRVGVSVTRAMGWPSAAHFTADSARRLLRKKLYGLVVARDGVSSAQRYTGSVLHVWCQNRRIAELMRQAFRRTARELSVTGNVLMLLTVAADLPAVFEDDFRLL 1281
            +  RLG DA  V   PNAGG+SVVSEALS+EY  + FG  DV+ EM+I YWSP WKK+D++ TI+  R      V VSVTRAM +     FT   A+ LLRKKLYGLVVA+ GVS+AQRY  S+LH+WCQ + IA+ +   ++    EL +  NV+++ TV  +   +F +D +L+
Sbjct:   55 KAFRLGRDASLVFTEPNAGGQSVVSEALSMEYMHQLFGAVDVVTEMQIEYWSPNWKKVDYLCTIQSAR------VAVSVTRAMKFRRRDPFTESDAKALLRKKLYGLVVAKSGVSAAQRYAKSILHIWCQTKLIADKIAACYQAIVAELDIEDNVILMATVTQE-EGIFSNDVQLV 223          
BLAST of mRNA_P-wetherbeei_contig6218.3.1 vs. uniprot
Match: A0A485K5I8_9STRA (Aste57867_1399 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K5I8_9STRA)

HSP 1 Score: 167 bits (423), Expect = 2.840e-42
Identity = 88/180 (48.89%), Postives = 122/180 (67.78%), Query Frame = 1
Query:  754 RTLRLGADARRVAAAPNAGGRSVVSEALSVEYFARRFGGHDVLCEMEISYWSPQWKKIDFIATIKDYRGGSCNRVGVSVTRAMGWPSAAHFTADSARRLLRKKLYGLVVARDGVSSAQRYTGSVLHVWCQNRRIAELMRQAFRRTARELSVTGNVLMLLTVAADLPAVFEDDFRLLGMAA 1293
            R  RLG DA  V   PNAGG+SVVSEALS+EY  + FG  DV+ EM+I YWSP WKK+D++ TI         R+ VSVTRAM + +   FT D AR LLRKKL+GLVVA+ GVS +QRYT S+LH+WCQ++ IA+ +  +++    EL +  NV+++ TVA +   +++++  L+  AA
Sbjct:  249 RAFRLGRDASLVLTEPNAGGKSVVSEALSMEYMHQLFGAVDVVTEMQIEYWSPNWKKVDYLCTIY------AERIAVSVTRAMKFKAWEAFTLDDARTLLRKKLFGLVVAKTGVSESQRYTKSILHIWCQSKAIADTIALSYKAIVAELEIEDNVILMATVAHE-DGIYDNNMTLVQAAA 421          
BLAST of mRNA_P-wetherbeei_contig6218.3.1 vs. uniprot
Match: A0A024U0A0_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U0A0_9STRA)

HSP 1 Score: 160 bits (404), Expect = 4.280e-42
Identity = 88/172 (51.16%), Postives = 112/172 (65.12%), Query Frame = 1
Query:  766 LGADARRVAAAPNAGGRSVVSEALSVEYFARRFGGHDVLCEMEISYWSPQWKKIDFIATIKDYRGGSCNRVGVSVTRAMGWPSAAHFTADSARRLLRKKLYGLVVARDGVSSAQRYTGSVLHVWCQNRRIAELMRQAFRRTARELSVTGNVLMLLTVAADLPAVFEDDFRLL 1281
            LG DA  V   PNAGGRSVVSEALS+EY  +RFG  DV+ EM+I YWSP WKK+D++ TI         R+ VSVTRAM +   A FT   A+ LLRKKLYGLVVA+ GV +AQRYT SVLH+WCQ   IA  +         +L +  NV+++ TVA +   +F+++  LL
Sbjct:   17 LGRDASLVYWEPNAGGRSVVSEALSMEYMHQRFGAMDVVTEMQIEYWSPNWKKVDYLCTIYG------QRIAVSVTRAMKFHKNAVFTTSDAQTLLRKKLYGLVVAKAGVCNAQRYTKSVLHIWCQTTAIARTLAMCHGAVVADLDIVENVILIATVARE-EGIFDNNLVLL 181          
BLAST of mRNA_P-wetherbeei_contig6218.3.1 vs. uniprot
Match: A0A7S1U3N9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U3N9_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.740e-42
Identity = 89/186 (47.85%), Postives = 116/186 (62.37%), Query Frame = 1
Query:  760 LRLGADARRVAAAPNAGGRSVVSEALSVEYFARRFGGHDVLCEMEISYWSPQWKKIDFIATIKDYRGGSCNRVGVSVTRAMGWPSAAHFTADSARRLLRKKLYGLVVARDGVSSAQRYTGSVLHVWCQNRRIAELMRQAFRRTARELS----------------VTGNVLMLLTVAADLPAVFEDD 1269
            + LG +A+R+   PNAGG+SVVSEALSVEYF +RF    +  EME++YWS  WKKID+   +         RVGVSVTRAMG+P+   FT   ARRLL+KKLYGL+VAR G+  + ++  +VLH WCQ+ RIA+L+++AF   A                    VT NV+ LLTVA   P VF D+
Sbjct:    1 MSLGFEAQRIVDEPNAGGKSVVSEALSVEYFVKRFRATAIQTEMELTYWSEHWKKIDYSVVV------GAQRVGVSVTRAMGFPTQGAFTTGDARRLLKKKLYGLIVARAGIDESCKFGVAVLHTWCQSARIAKLLQEAFVELAAAEQERYVQEGGAEGGAWPPVTENVVCLLTVADTAPQVFTDE 180          
BLAST of mRNA_P-wetherbeei_contig6218.3.1 vs. uniprot
Match: A0A485K4R0_9STRA (Aste57867_94 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4R0_9STRA)

HSP 1 Score: 159 bits (402), Expect = 1.290e-41
Identity = 86/172 (50.00%), Postives = 115/172 (66.86%), Query Frame = 1
Query:  754 RTLRLGADARRVAAAPNAGGRSVVSEALSVEYFARRFGGHDVLCEMEISYWSPQWKKIDFIATIKDYRGGSCNRVGVSVTRAMGWPSAAHFTADSARRLLRKKLYGLVVARDGVSSAQRYTGSVLHVWCQNRRIAELMRQAFRRTARELSVTGNVLMLLTVAADLPAVFEDD 1269
            R  RLG DA  V + PNAGG+SVVSEALS+EY  + FG  DV+ EM+I YWSP WKK+D++ +I+        RV VSVTRAM +  +    A+S R LLRKKL+GLVVA+ GV  +QRY  S+LH+WCQ   +A+L+ Q +      L +T NV+++ TVAA   A+F +D
Sbjct:   42 RAFRLGRDASLVFSEPNAGGQSVVSEALSMEYMHQLFGAVDVVTEMQIEYWSPNWKKVDYLCSIRG------ERVAVSVTRAMTFQGSTFGLAES-RALLRKKLHGLVVAKSGVCVSQRYVKSILHIWCQTHAMADLLAQCYADVVVSLDITENVVLIATVAAAEAAIFTND 206          
BLAST of mRNA_P-wetherbeei_contig6218.3.1 vs. uniprot
Match: T0QUA5_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=T0QUA5_SAPDV)

HSP 1 Score: 160 bits (404), Expect = 1.310e-41
Identity = 97/231 (41.99%), Postives = 128/231 (55.41%), Query Frame = 1
Query:  586 FSVRVNNACHEGVARRLMAGRLFEEENASSPSTA---CEAFVCVDELVVMTTAAAAGGMRTLRLGADARRVAAAPNAGGRSVVSEALSVEYFARRFGGHDVLCEMEISYWSPQWKKIDFIATIKDYRGGSCNRVGVSVTRAMGWPSAAHFTADSARRLLRKKLYGLVVARDGVSSAQRYTGSVLHVWCQNRRIAELMRQAFRRTARELSVTGNVLMLLTVAADLPAVFEDD 1269
            F+     AC   + R+     L    N  +  TA   C  F+ +D        A   G R L L ADA ++   PNAGG S+VSEALS++Y     G  DV+ EM I YWS  WKK+D++ ++       C R+ VSVTRAM +P  A +TA  A  LL+KKL+GLVVAR GV  AQRYT S+LH+WCQ   IA  +   +     EL +T NV+++ TVAA    +F DD
Sbjct:   11 FTPHPTPACCIMMRRQFSITLLTRYVNVKAALTAVAPCPVFLSLDRF------ARHPGARRLDLEADALQILREPNAGGNSIVSEALSMQYMHELLGAFDVVTEMRIKYWSENWKKVDYLCSLAP----DC-RIAVSVTRAMKFPDPAAWTASDAMHLLKKKLFGLVVARAGVCKAQRYTKSILHIWCQTDAIAASIASVYEDVVTELGITENVVLVATVAATESCIFFDD 230          
BLAST of mRNA_P-wetherbeei_contig6218.3.1 vs. uniprot
Match: A0A1V9YAX6_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAX6_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.360e-41
Identity = 84/168 (50.00%), Postives = 108/168 (64.29%), Query Frame = 1
Query:  766 LGADARRVAAAPNAGGRSVVSEALSVEYFARRFGGHDVLCEMEISYWSPQWKKIDFIATIKDYRGGSCNRVGVSVTRAMGWPSAAHFTADSARRLLRKKLYGLVVARDGVSSAQRYTGSVLHVWCQNRRIAELMRQAFRRTARELSVTGNVLMLLTVAADLPAVFEDD 1269
            L ADAR++   PNAGG+SVVSEALS++Y    FG   V+ EM I YWS  WKK+D++ +I      +  RV VSVTRAM +P  A +T D AR LLRKKL+GLVVAR GV   QRYT SVLH+WCQ + IA  +   +     EL +  NV+++ T+A     +F DD
Sbjct:   58 LDADARQIYLEPNAGGKSVVSEALSMQYMHEAFGADAVVTEMRIKYWSSNWKKVDYLCSI------AAERVAVSVTRAMKFPDPAAWTNDDARFLLRKKLFGLVVARSGVCKEQRYTKSVLHIWCQTKAIALSIAACYEAVVDELDIAANVILIATIATAESCIFYDD 219          
BLAST of mRNA_P-wetherbeei_contig6218.3.1 vs. uniprot
Match: A0A6G0X2W3_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2W3_9STRA)

HSP 1 Score: 157 bits (396), Expect = 8.910e-41
Identity = 86/172 (50.00%), Postives = 111/172 (64.53%), Query Frame = 1
Query:  754 RTLRLGADARRVAAAPNAGGRSVVSEALSVEYFARRFGGHDVLCEMEISYWSPQWKKIDFIATIKDYRGGSCNRVGVSVTRAMGWPSAAHFTADSARRLLRKKLYGLVVARDGVSSAQRYTGSVLHVWCQNRRIAELMRQAFRRTARELSVTGNVLMLLTVAADLPAVFEDD 1269
            R  +LG DA  V   PNAGG+S VSEA+S+EY  + FG  DV+ EM+I YWSP WKK+D++ TI+        RV VSVTRAM +  A       A RLLRKK+ GLVVA+ GVS  QRY+ SVLH+WCQ   IA  + + + + A EL VT NV+++ TVAA    +F +D
Sbjct:   41 RAFKLGVDATLVMTEPNAGGQSEVSEAMSMEYMHQLFGAVDVVTEMQIEYWSPNWKKVDYLCTIRG------ERVAVSVTRAMAFQGAPF----DAARLLRKKMRGLVVAKTGVSRRQRYSKSVLHIWCQTTEIAMALSECYAQVADELGVTENVILIATVAATEACIFTND 202          
BLAST of mRNA_P-wetherbeei_contig6218.3.1 vs. uniprot
Match: A0A812UF16_SYMMI (AAC4 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812UF16_SYMMI)

HSP 1 Score: 157 bits (397), Expect = 2.390e-40
Identity = 84/177 (47.46%), Postives = 112/177 (63.28%), Query Frame = 1
Query:  766 LGADARRVAAAPNAGGRSVVSEALSVEYFARRFGGHDVLCEMEISYWSPQWKKIDFIATIKDYRGGSCNRVGVSVTRAMGWPSAAHFTADSARRLLRKKLYGLVVARDGVSSAQRYTGSVLHVWCQNRRIAELMRQAFRRTARE--------LSVTGNVLMLLTVAADLPAVFEDDF 1272
            +G +A+++   PNAGG S+VSEALS EY ARRFG  +V+ EM I YW   WKKID+IAT+         RVG+SVTRAMG+P    F  ++ARRL  KKL+GLVVAR G+S A  Y  S+LHVWCQ   I+ +M  AF     E         +++G++ M+LTV   +  V+ +DF
Sbjct:   81 MGTEAQKILDEPNAGGSSMVSEALSAEYLARRFGATNVVTEMAIQYWLSNWKKIDYIATVYG------RRVGISVTRAMGFPRPGDFAMENARRLCEKKLFGLVVARAGISEAHSYDRSILHVWCQTDEISNMMYIAFNEIVSEDKAQNPLNPTLSGSITMILTVCDTIEGVYTEDF 251          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6218.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A485K2V1_9STRA1.420e-4248.89Aste57867_92 protein n=1 Tax=Aphanomyces stellatus... [more]
A0A6G0X330_9STRA1.460e-4248.86Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485K5I8_9STRA2.840e-4248.89Aste57867_1399 protein n=1 Tax=Aphanomyces stellat... [more]
A0A024U0A0_9STRA4.280e-4251.16Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A7S1U3N9_9STRA5.740e-4247.85Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A485K4R0_9STRA1.290e-4150.00Aste57867_94 protein n=1 Tax=Aphanomyces stellatus... [more]
T0QUA5_SAPDV1.310e-4141.99Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1V9YAX6_9STRA1.360e-4150.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A6G0X2W3_9STRA8.910e-4150.00Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]
A0A812UF16_SYMMI2.390e-4047.46AAC4 protein n=1 Tax=Symbiodinium microadriaticum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6218contigP-wetherbeei_contig6218:1699..3522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3218.PP1S18_52V6.2
Model size1824
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.41e-43
EggNOG OGs2CDSC@1|root,2S3F1@2759|Eukaryota,37YN2@33090|Viridiplantae,3GNBQ@35493|Streptophyta
Cds size1041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186897.9514105-UTR-P-wetherbeei_contig6218:1698..21511683186897.9514105-UTR-P-wetherbeei_contig6218:1698..2151Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6218 1699..2151 -
1683186897.9698539-UTR-P-wetherbeei_contig6218:3192..35221683186897.9698539-UTR-P-wetherbeei_contig6218:3192..3522Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6218 3193..3522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186897.961267-CDS-P-wetherbeei_contig6218:2151..31921683186897.961267-CDS-P-wetherbeei_contig6218:2151..3192Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6218 2152..3192 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6218.3.1prot_P-wetherbeei_contig6218.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6218 2152..3192 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6218.3.1

>prot_P-wetherbeei_contig6218.3.1 ID=prot_P-wetherbeei_contig6218.3.1|Name=mRNA_P-wetherbeei_contig6218.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=347bp
MPATRPSPAIAHTSTRNTGGIFYPPGPRLTSSQPAKGSCATFLAQAAAAA
AAAAEEEEAAPAATTRRCRRQRWLPRAAAWHLGNDFSVRVNNACHEGVAR
RLMAGRLFEEENASSPSTACEAFVCVDELVVMTTAAAAGGMRTLRLGADA
RRVAAAPNAGGRSVVSEALSVEYFARRFGGHDVLCEMEISYWSPQWKKID
FIATIKDYRGGSCNRVGVSVTRAMGWPSAAHFTADSARRLLRKKLYGLVV
ARDGVSSAQRYTGSVLHVWCQNRRIAELMRQAFRRTARELSVTGNVLMLL
TVAADLPAVFEDDFRLLGMAAPVEAVAAAATAAVGKAGKRAKARQR*
back to top

mRNA from alignment at P-wetherbeei_contig6218:1699..3522-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6218.3.1 ID=mRNA_P-wetherbeei_contig6218.3.1|Name=mRNA_P-wetherbeei_contig6218.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1824bp|location=Sequence derived from alignment at P-wetherbeei_contig6218:1699..3522- (Phaeothamnion wetherbeei SAG_119_79)
AACAACGAAAGAAAAGGAATAGGGTGAGTTGGATGTGCGGAACTCGCCTG ACTTTGAGGAACGTCGCAATAAGTTGACTGGACCTACAAAAAGGGTTTGC TCCGGGGCCGGCCCTTGCATTTTTACATCAGTTCTGTTCGTATTGTCCAG CTGACCGGCTGTGGACCTCTTCTTACATCCCGATAATAAAACACAATCTC TCCGCTTCACGCAGCGACATTCACGCGAAGGCAAGCATCAACATGGCAGC ACAGCGCTCTTCCTCAACAATAAGATCAATGCGCGTCGAGGTGGAGGTCG ACTCGGTCGGCGGCGGCGCCGAATCCCGTCATGCCGGCGACTCGGCCTTC TCCTGCCATCGCTCACACCTCGACGCGGAACACCGGTGGGATATTCTATC CACCCGGACCACGCTTGACTTCCTCTCAGCCCGCGAAGGGCAGTTGTGCT ACCTTCCTCGCCCAAGCCGCTGCAGCGGCGGCGGCGGCGGCGGAGGAGGA GGAGGCAGCGCCGGCCGCAACTACCCGGCGTTGCCGGCGCCAGCGCTGGC TGCCGCGCGCTGCGGCGTGGCACCTCGGCAACGACTTCTCCGTCCGCGTG AATAACGCCTGCCACGAGGGCGTCGCCCGGCGGCTCATGGCCGGCCGACT CTTCGAGGAGGAAAACGCCTCGTCTCCTTCGACGGCATGCGAGGCCTTTG TCTGCGTCGATGAGCTGGTCGTCATGACGACCGCCGCCGCCGCCGGAGGG ATGCGGACGCTGCGGCTGGGCGCCGACGCGCGGCGGGTGGCTGCTGCGCC CAACGCCGGGGGCCGCTCCGTCGTGTCCGAGGCGCTCTCGGTCGAGTACT TCGCCCGGCGCTTCGGCGGCCATGACGTGCTGTGCGAGATGGAGATCTCT TACTGGTCCCCGCAATGGAAGAAGATCGATTTCATCGCAACTATCAAGGA CTACCGCGGTGGCAGCTGCAACCGTGTTGGGGTCTCGGTGACACGCGCCA TGGGCTGGCCGAGCGCGGCACACTTTACGGCGGACAGCGCGCGGCGGTTG CTGCGCAAGAAGCTGTACGGCCTGGTGGTGGCCCGCGACGGCGTCTCCTC CGCGCAGCGCTATACGGGCTCGGTGCTTCACGTTTGGTGCCAAAACCGCC GCATAGCGGAGTTAATGCGCCAGGCCTTCCGGCGGACTGCGCGGGAGCTA TCGGTCACGGGGAACGTGCTGATGCTACTGACGGTCGCCGCCGACCTGCC CGCCGTCTTTGAGGACGACTTCCGGTTGCTGGGCATGGCGGCACCCGTAG AGGCGGTGGCAGCGGCGGCGACGGCAGCAGTGGGGAAGGCCGGGAAGAGG GCAAAGGCTCGTCAAAGGTAGGACGGTTCCGATGGAGAGTGGGCGTGCGG TGCGTTTAATCTGGTTGTATCTTACTTTGATCTGGAAGGAGTTTGCTTGA TGTGACGATGGTCTGGCTAGGTTGAATCATTGAAGGATTTAAGCTGGTAT GGACATGTAAATAGATTGTGGGAGTAGACTTTTGTGTTTGGAAGGCTTAC GCCCTCCTTCCCGTCCACGGCGTTATCCGCGAAAGCCAGCCAAGCCAACC CTTCCTCAAAGAACGACATGTTTAGTGTACAGAGCCCCAATCTCAATTGC CTATCAAGATGCAAATTAGCCTTGAGCGAAGCGCCGCCGAGCATTGAGAA AGCAACGTGGCCAAGTAAGTCAGTACATAGCAAAGATGTGTACTGCACTT GAACAAAAGGAAGAGCAAATCATGTTATTGCTATTGGCTCCACCCAAGTC TCGCTTGCCCGGACAGGCGGCGGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6218:1699..3522-

>mRNA_P-wetherbeei_contig6218.3.1 ID=mRNA_P-wetherbeei_contig6218.3.1|Name=mRNA_P-wetherbeei_contig6218.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1041bp|location=Sequence derived from alignment at P-wetherbeei_contig6218:1699..3522- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGGCGACTCGGCCTTCTCCTGCCATCGCTCACACCTCGACGCGGAA
CACCGGTGGGATATTCTATCCACCCGGACCACGCTTGACTTCCTCTCAGC
CCGCGAAGGGCAGTTGTGCTACCTTCCTCGCCCAAGCCGCTGCAGCGGCG
GCGGCGGCGGCGGAGGAGGAGGAGGCAGCGCCGGCCGCAACTACCCGGCG
TTGCCGGCGCCAGCGCTGGCTGCCGCGCGCTGCGGCGTGGCACCTCGGCA
ACGACTTCTCCGTCCGCGTGAATAACGCCTGCCACGAGGGCGTCGCCCGG
CGGCTCATGGCCGGCCGACTCTTCGAGGAGGAAAACGCCTCGTCTCCTTC
GACGGCATGCGAGGCCTTTGTCTGCGTCGATGAGCTGGTCGTCATGACGA
CCGCCGCCGCCGCCGGAGGGATGCGGACGCTGCGGCTGGGCGCCGACGCG
CGGCGGGTGGCTGCTGCGCCCAACGCCGGGGGCCGCTCCGTCGTGTCCGA
GGCGCTCTCGGTCGAGTACTTCGCCCGGCGCTTCGGCGGCCATGACGTGC
TGTGCGAGATGGAGATCTCTTACTGGTCCCCGCAATGGAAGAAGATCGAT
TTCATCGCAACTATCAAGGACTACCGCGGTGGCAGCTGCAACCGTGTTGG
GGTCTCGGTGACACGCGCCATGGGCTGGCCGAGCGCGGCACACTTTACGG
CGGACAGCGCGCGGCGGTTGCTGCGCAAGAAGCTGTACGGCCTGGTGGTG
GCCCGCGACGGCGTCTCCTCCGCGCAGCGCTATACGGGCTCGGTGCTTCA
CGTTTGGTGCCAAAACCGCCGCATAGCGGAGTTAATGCGCCAGGCCTTCC
GGCGGACTGCGCGGGAGCTATCGGTCACGGGGAACGTGCTGATGCTACTG
ACGGTCGCCGCCGACCTGCCCGCCGTCTTTGAGGACGACTTCCGGTTGCT
GGGCATGGCGGCACCCGTAGAGGCGGTGGCAGCGGCGGCGACGGCAGCAG
TGGGGAAGGCCGGGAAGAGGGCAAAGGCTCGTCAAAGGTAG
back to top