mRNA_P-wetherbeei_contig6211.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6211.3.2
Unique NamemRNA_P-wetherbeei_contig6211.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6211.3.2 vs. uniprot
Match: D7FI03_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI03_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 4.460e-24
Identity = 49/64 (76.56%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 MSSIFEAYDEEYVALTRDISKSISHVTTYETDPEKKRGQLRHIDALLGQADDLIKQMEIEVRST 192
            MSSIFEAYDEE++ALT+DI  +ISH+ TYETD  KKR QL HIDAL+GQA DL+KQMEIEVRST
Sbjct:    1 MSSIFEAYDEEFLALTQDIGNNISHLNTYETDAGKKRTQLTHIDALVGQAGDLLKQMEIEVRST 64
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BLAST of mRNA_P-wetherbeei_contig6211.3.2 vs. uniprot
Match: A0A6H5L3U6_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3U6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 5.030e-24
Identity = 48/64 (75.00%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 MSSIFEAYDEEYVALTRDISKSISHVTTYETDPEKKRGQLRHIDALLGQADDLIKQMEIEVRST 192
            MSSIFEAYDEE++ALT DI  +ISH+ TYETD  KKR QL H+DAL+GQA DL+KQMEIEVRST
Sbjct:    1 MSSIFEAYDEEFLALTHDIGNNISHLNTYETDAGKKRTQLTHVDALVGQAGDLLKQMEIEVRST 64
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BLAST of mRNA_P-wetherbeei_contig6211.3.2 vs. uniprot
Match: A0A836CJ32_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ32_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.600e-20
Identity = 41/64 (64.06%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    1 MSSIFEAYDEEYVALTRDISKSISHVTTYETDPEKKRGQLRHIDALLGQADDLIKQMEIEVRST 192
            M+SIFE+Y EE+V LT D+S++ISH +TYET+P  + GQLR  + LLGQADDL+KQME+E RST
Sbjct:    1 MTSIFESYHEEFVTLTTDLSRNISHASTYETNPAARSGQLRQANVLLGQADDLLKQMEVEARST 64
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BLAST of mRNA_P-wetherbeei_contig6211.3.2 vs. uniprot
Match: A0A8K1FJR7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FJR7_PYTOL)

HSP 1 Score: 77.0 bits (188), Expect = 9.190e-16
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    1 MSSIFEAYDEEYVALTRDISKSISHVTTYETDPEKKRGQLRHIDALLGQADDLIKQMEIEVRS 189
            M+SIF+ YDEEY ALT DISK IS V TYE + EKK+  + HI  LL QA+ L++QME+EVRS
Sbjct:    1 MTSIFDGYDEEYRALTSDISKKISEVATYEDEKEKKKTSIVHIGDLLTQANQLVQQMELEVRS 63
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BLAST of mRNA_P-wetherbeei_contig6211.3.2 vs. uniprot
Match: K3WK26_GLOUD (V-SNARE domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WK26_GLOUD)

HSP 1 Score: 75.5 bits (184), Expect = 3.520e-15
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 MSSIFEAYDEEYVALTRDISKSISHVTTYETDPEKKRGQLRHIDALLGQADDLIKQMEIEVRS 189
            M+SIF+ YDEEY ALT DISK IS V +YE   EKK+  + HI  LL QA  L++QME+EVRS
Sbjct:    1 MTSIFDGYDEEYRALTSDISKKISEVASYEDQQEKKKSSILHIGDLLTQASQLVQQMELEVRS 63
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BLAST of mRNA_P-wetherbeei_contig6211.3.2 vs. uniprot
Match: H3GCF5_PHYRM (V-SNARE domain-containing protein n=19 Tax=Peronosporaceae TaxID=4777 RepID=H3GCF5_PHYRM)

HSP 1 Score: 73.2 bits (178), Expect = 2.700e-14
Identity = 36/63 (57.14%), Postives = 47/63 (74.60%), Query Frame = 1 
Query:    1 MSSIFEAYDEEYVALTRDISKSISHVTTYETDPEKKRGQLRHIDALLGQADDLIKQMEIEVRS 189
            M++IF+ YDEEY ALT DISK IS + +YE + EKK+  + H+  LL QA  LI+QME+EVRS
Sbjct:    1 MTTIFDGYDEEYRALTSDISKKISEIASYEDEKEKKKTSIVHVGDLLTQATQLIQQMELEVRS 63
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BLAST of mRNA_P-wetherbeei_contig6211.3.2 vs. uniprot
Match: A0A5D6Y6V1_9STRA (V-SNARE domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y6V1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.780e-14
Identity = 38/63 (60.32%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    1 MSSIFEAYDEEYVALTRDISKSISHVTTYETDPEKKRGQLRHIDALLGQADDLIKQMEIEVRS 189
            M+SIF+ YDEEY ALT DISK IS V +YE   EKK+  + HI  LL QA  L++QME+EVRS
Sbjct:    1 MTSIFDGYDEEYRALTSDISKKISEVASYEDQHEKKKASILHIGDLLTQASQLVQQMELEVRS 63
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BLAST of mRNA_P-wetherbeei_contig6211.3.2 vs. uniprot
Match: A0A3M6VWR5_9STRA (V-SNARE domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VWR5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 1.470e-13
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:    1 MSSIFEAYDEEYVALTRDISKSISHVTTYETDPEKKRGQLRHIDALLGQADDLIKQMEIEVRS 189
            M++IF+ YDEEY ALT DISK +S V  YE   +KK+  + HI  LL QA  LI+QME+EVRS
Sbjct:    1 MTTIFDGYDEEYRALTSDISKKLSEVALYEDQKDKKKSSIVHIGDLLTQATQLIQQMELEVRS 63
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BLAST of mRNA_P-wetherbeei_contig6211.3.2 vs. uniprot
Match: A0A482S7X4_9ARCH (V-SNARE domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S7X4_9ARCH)

HSP 1 Score: 63.2 bits (152), Expect = 2.720e-11
Identity = 31/61 (50.82%), Postives = 47/61 (77.05%), Query Frame = 1 
Query:    7 SIFEAYDEEYVALTRDISKSISHVTTYETDPEKKRGQLRHIDALLGQADDLIKQMEIEVRS 189
            SIF+AYD E+ +LT+DI+K+++ +   ++DP+     ++ IDALL QA DLIKQME+E+RS
Sbjct:    2 SIFDAYDAEFASLTKDINKNLNDL---KSDPQNGSSLIKMIDALLSQAQDLIKQMEVELRS 59
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BLAST of mRNA_P-wetherbeei_contig6211.3.2 vs. uniprot
Match: A0A662WGZ5_9STRA (V-SNARE domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WGZ5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.420e-9
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:    1 MSSIFEAYDEEYVALTRDISKSISHVTTYETDPEKKRGQLRHIDALLGQADDLIK--------------QMEIEVRS 189
            M++IF+ YDEEY ALT DISK +S + +YE   +KK+  + H+  LL QA  L++              QME+EVRS
Sbjct:    1 MTTIFDGYDEEYRALTSDISKKLSEIASYEDQKDKKKTSIVHVGDLLTQATQLVRTASISESVGLVSIQQMELEVRS 77
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6211.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FI03_ECTSI4.460e-2476.56Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A6H5L3U6_9PHAE5.030e-2475.00t-SNARE coiled-coil homology domain-containing pro... [more]
A0A836CJ32_9STRA3.600e-2064.06Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A8K1FJR7_PYTOL9.190e-1661.90Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WK26_GLOUD3.520e-1560.32V-SNARE domain-containing protein n=1 Tax=Globispo... [more]
H3GCF5_PHYRM2.700e-1457.14V-SNARE domain-containing protein n=19 Tax=Peronos... [more]
A0A5D6Y6V1_9STRA2.780e-1460.32V-SNARE domain-containing protein n=1 Tax=Pythium ... [more]
A0A3M6VWR5_9STRA1.470e-1357.14V-SNARE domain-containing protein n=2 Tax=Peronosp... [more]
A0A482S7X4_9ARCH2.720e-1150.82V-SNARE domain-containing protein n=1 Tax=archaeon... [more]
A0A662WGZ5_9STRA1.420e-942.86V-SNARE domain-containing protein n=1 Tax=Nothophy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6211contigP-wetherbeei_contig6211:3062..3525 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FI03
Preferred nameVTI1A
PFAMsV-SNARE,V-SNARE_C
Model size192
Max annot lvl2759|Eukaryota
KEGG koko:K08493,ko:K08494,ko:K18749
KEGG Pathwayko04130,ko04138,map04130,map04138
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0002576,GO:0003674,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005767,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005776,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006891,GO:0006892,GO:0006896,GO:0006904,GO:0006906,GO:0006914,GO:0006996,GO:0007030,GO:0007033,GO:0007034,GO:0008021,GO:0008104,GO:0008150,GO:0008152,GO:0008200,GO:0008283,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016247,GO:0016248,GO:0016482,GO:0017081,GO:0019869,GO:0022406,GO:0030133,GO:0030134,GO:0030135,GO:0030136,GO:0030139,GO:0030141,GO:0030173,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031091,GO:0031093,GO:0031201,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031901,GO:0031902,GO:0031974,GO:0031982,GO:0031983,GO:0031984,GO:0032010,GO:0032501,GO:0032588,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033036,GO:0033267,GO:0033365,GO:0034613,GO:0034774,GO:0036477,GO:0042144,GO:0042147,GO:0042175,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043195,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043679,GO:0044237,GO:0044248,GO:0044297,GO:0044306,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044456,GO:0044463,GO:0044464,GO:0045055,GO:0045184,GO:0045202,GO:0045324,GO:0045335,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048280,GO:0048284,GO:0048471,GO:0050789,GO:0050879,GO:0050881,GO:0050882,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051649,GO:0055037,GO:0055038,GO:0060205,GO:0060341,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0065009,GO:0070013,GO:0070382,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090161,GO:0090174,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098793,GO:0098796,GO:0098805,GO:0098827,GO:0098852,GO:0099106,GO:0099503,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0150034,GO:1903076,GO:1903827,GO:1904375,GO:1905475
Exons2
Evalue7.31e-25
EggNOG OGsKOG1666@1|root,KOG1666@2759|Eukaryota
Descriptionvesicle fusion with Golgi apparatus
Cds size192
COG categoryS
BRITEko00000,ko00001,ko03019,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186897.7411578-CDS-P-wetherbeei_contig6211:3061..31611683186897.7411578-CDS-P-wetherbeei_contig6211:3061..3161Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6211 3062..3161 +
1683186897.7544804-CDS-P-wetherbeei_contig6211:3433..35251683186897.7544804-CDS-P-wetherbeei_contig6211:3433..3525Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6211 3434..3525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6211.3.2prot_P-wetherbeei_contig6211.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6211 3062..3525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6211.3.2

>prot_P-wetherbeei_contig6211.3.2 ID=prot_P-wetherbeei_contig6211.3.2|Name=mRNA_P-wetherbeei_contig6211.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=64bp
MSSIFEAYDEEYVALTRDISKSISHVTTYETDPEKKRGQLRHIDALLGQA
DDLIKQMEIEVRST
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mRNA from alignment at P-wetherbeei_contig6211:3062..3525+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6211.3.2 ID=mRNA_P-wetherbeei_contig6211.3.2|Name=mRNA_P-wetherbeei_contig6211.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=464bp|location=Sequence derived from alignment at P-wetherbeei_contig6211:3062..3525+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTCGATATTCGAGGCGTACGACGAGGAGTACGTCGCGCTTACACG
AGATATTTCAAAGAGCATCAGCCATGTCACGACGTACGAGACGGACCCAG
GTATCGAACGAGTCCCATCTTCACACTCAGTGCGGGAAAGTCGTTTCCAA
AACCGAGGCTTGTAGAGAAAGCGCAGGACAATCGCCCTCTATGCGATAGT
TCTACTGCTTTCTCGGGCTGCTTGCAATGAGTACACAGAAAGCACACGCA
TTATTGCCGTTGTCGAAAAGAACGTGTTTCCTTGTCCCTCACTCTTCTCC
CTGCTCCTTATTAATCCGCACCGCCAAACACCCAATTTCCATTGTGACCC
TGCTCTCCTCCGGCGCGAGCAGAGAAGAAGCGTGGCCAGCTGCGGCACAT
CGACGCGCTGCTGGGGCAGGCCGACGACCTCATCAAGCAGATGGAGATAG
AGGTGCGGTCGACG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6211:3062..3525+

>mRNA_P-wetherbeei_contig6211.3.2 ID=mRNA_P-wetherbeei_contig6211.3.2|Name=mRNA_P-wetherbeei_contig6211.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=192bp|location=Sequence derived from alignment at P-wetherbeei_contig6211:3062..3525+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTCGATATTCGAGGCGTACGACGAGGAGTACGTCGCGCTTACACG
AGATATTTCAAAGAGCATCAGCCATGTCACGACGTACGAGACGGACCCAG
AGAAGAAGCGTGGCCAGCTGCGGCACATCGACGCGCTGCTGGGGCAGGCC
GACGACCTCATCAAGCAGATGGAGATAGAGGTGCGGTCGACG
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