mRNA_P-wetherbeei_contig6201.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6201.2.1
Unique NamemRNA_P-wetherbeei_contig6201.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6201.2.1 vs. uniprot
Match: D7FT43_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT43_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 6.330e-15
Identity = 74/225 (32.89%), Postives = 106/225 (47.11%), Query Frame = 1 
Query:  103 HKYLTHVRRTVATMDDRASVEIEARLGLVLEAGRPVRAYPQVPGSGAVTITREDMRERRFEFRTGVSAPSYDDITTRLAVAGGRAE-RSEERVYSYEG----DTRCIVRS-GRLRREKKEKIPNLERTFALPGAPYDLRITVSTEKELDP---PGLDP-SADPTCNQHQDPVAAGFETARSKKRDSLVGYRLPFMTKPQPGTAAAANEPPALWRVDMTRVASASG 747
            H+ L H    V     R+++EIE R+GL+ +  R  RA P +PGSGAV +  + MR+R   F +GVSAP++D +   +    G AE  S+E VY Y+     D R +      LR E+KE    +   F L  A YDLR+  S E+ + P   PGL P S++P           G+   R+K+R S                A    +   +WR D+T V    G
Sbjct:   46 HQRLCHEPAEV-----RSNLEIEVRVGLISQHDRLERATPGIPGSGAVQMDSDMMRQRGLRFVSGVSAPAFDAVKEEVGRRYGVAELASKEVVYVYDSGQMRDQRVVADGVNPLRCERKEARQQVN--FQLAAAQYDLRVQASLEQPVPPEAVPGLQPGSSEPP---------QGWSGRRTKRRFSFKS------------DANTPEDERWIWRADLTLVEEDDG 242
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6201.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FT43_ECTSI6.330e-1532.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6201contigP-wetherbeei_contig6201:1692..3478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FT43
PFAMsDSPc,mRNA_cap_C,mRNA_cap_enzyme,mRNA_triPase
Model size1061
Max annot lvl2759|Eukaryota
KEGG rclassRC00002
KEGG koko:K00987,ko:K01104,ko:K08244,ko:K13917,ko:K14165
KEGG ReactionR03828,R10814
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.04e-15
EggNOG OGsCOG5226@1|root,KOG2386@2759|Eukaryota
EC2.7.7.50,2.7.9.4,3.1.3.16,3.1.3.48
DescriptionmRNA guanylyltransferase activity
Cds size1059
COG categoryA
BRITEko00000,ko00001,ko01000,ko01009,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186896.5494032-CDS-P-wetherbeei_contig6201:1693..19301683186896.5494032-CDS-P-wetherbeei_contig6201:1693..1930Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6201 1694..1930 -
1683186896.5708048-CDS-P-wetherbeei_contig6201:2278..26691683186896.5708048-CDS-P-wetherbeei_contig6201:2278..2669Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6201 2279..2669 -
1683186896.5813844-CDS-P-wetherbeei_contig6201:2899..31711683186896.5813844-CDS-P-wetherbeei_contig6201:2899..3171Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6201 2900..3171 -
1683186896.5919294-CDS-P-wetherbeei_contig6201:3319..34781683186896.5919294-CDS-P-wetherbeei_contig6201:3319..3478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6201 3320..3478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6201.2.1prot_P-wetherbeei_contig6201.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6201 1694..3478 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6201.2.1

>prot_P-wetherbeei_contig6201.2.1 ID=prot_P-wetherbeei_contig6201.2.1|Name=mRNA_P-wetherbeei_contig6201.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=353bp
VLSLHQDTLAQGTAKKTETDRRLHPFGQDVRAEFHKYLTHVRRTVATMDD
RASVEIEARLGLVLEAGRPVRAYPQVPGSGAVTITREDMRERRFEFRTGV
SAPSYDDITTRLAVAGGRAERSEERVYSYEGDTRCIVRSGRLRREKKEKI
PNLERTFALPGAPYDLRITVSTEKELDPPGLDPSADPTCNQHQDPVAAGF
ETARSKKRDSLVGYRLPFMTKPQPGTAAAANEPPALWRVDMTRVASASGG
SGGGGAAGGGSNGGRDDDEEANTLEVEMEMQTVVQALWTDGAEDDAKHEG
ETELLTQHLVSLVHMLNPLEPPSTILDPPDEKDKGLVAAAIARLATLRPP
FGG
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mRNA from alignment at P-wetherbeei_contig6201:1692..3478-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6201.2.1 ID=mRNA_P-wetherbeei_contig6201.2.1|Name=mRNA_P-wetherbeei_contig6201.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1787bp|location=Sequence derived from alignment at P-wetherbeei_contig6201:1692..3478- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTCTCGTTGCATCAGGACACACTTGCGCAAGGAACCGCAAAGAAAAC
TGAGACCGACCGCCGCCTTCATCCCTTCGGACAAGATGTCAGAGCAGAGT
TCCACAAATACTTGACGCACGTTCGGCGAACGGTGGCCACCATGGACGAC
AGGGCCTCGGTGAGTTAGCGAAGCCTCTTCTATCTTCTACCCATCCCCGA
ACAAAAGCTTGACCCTATTTCCAAAAGTCCGTGTTCGAAACTCTTCTATC
ACTGCCCTCTCATTTGGAACGCGGTCGCCGACACCGAAACCGCAATGTCC
GGTGCAGGTCGAGATCGAGGCCCGCCTTGGGCTGGTCCTCGAGGCCGGCC
GCCCCGTGCGGGCCTACCCGCAGGTGCCGGGCTCCGGCGCCGTCACCATC
ACCCGCGAGGATATGCGGGAGCGCCGCTTCGAGTTCCGCACGGGCGTAAG
TGCCCCGTCGTACGACGACATCACGACACGGCTGGCAGTGGCGGGCGGCC
GCGCCGAGCGGTCCGAGGAGCGCGTCTACAGCTACGAGGGCGACACGCGC
TGCATCGTCCGCAGCGGCCGCTTGCGGAGGTGCGTTTCGCTCTTCTCTTT
TCGCATTTGCCATTGTGTGGGGGCGGCTGCGGCAATAGCGACGGTGGGAA
GGCATGGCGATTTTTCTTAACTCTTTTGACTTTCTGTCCGGCGGCAGCTG
CGGTGCCAGTGCACTCTTGGCCTCGCTTGACTATTTCTTTTTTGCTTGCT
CTACCTCTTCCTTTTCGACGAATTCTCCTCGCAAATCCTTCCCACCCTGA
TGAGTCTAGGGAGAAGAAGGAGAAGATCCCCAACCTGGAACGGACCTTTG
CGCTCCCCGGCGCCCCTTACGACCTCCGCATCACCGTCTCGACGGAAAAG
GAGCTGGATCCGCCTGGACTCGACCCGTCTGCGGACCCGACCTGCAACCA
GCACCAGGACCCCGTAGCCGCAGGTTTTGAGACGGCGCGATCAAAGAAGC
GGGACAGCTTGGTTGGCTACCGACTGCCGTTCATGACCAAGCCGCAGCCG
GGCACGGCTGCGGCTGCAAACGAGCCGCCAGCGCTGTGGCGGGTTGACAT
GACGCGGGTGGCGTCGGCGTCGGGGGGCAGCGGAGGCGGCGGCGCGGCGG
GGGGCGGCAGCAATGGTGGCCGCGATGACGACGAAGAGGCCAACACGCTG
GTGAGCTCAGAGGTCTTGCAGCCTGTTTGTCAGTAACTCGTCTCTTGCAT
TTCTCCTATTAGTCAGTCCTTCAACGTTTCTCAAAGATCGGAAACGCAGA
TGTCGCATTGCGACATGATGTCCTTTCTGCCAAATTGGGTTTTCCCCGTT
TTTACATGTCTCACCTGTTCTCTAGGAAAGACGCAGCATTCTGACGTTCT
TAGCTCGTCCGCTCCATTGTTTGGTCCACGTTTTGTCGTAAACCTATAAG
CGCCCCCTTCTACAACTACCTCACATTCTTAAACTCTCTGGCTTCTACCC
TATCTGCCCCACATTCTAAAACTTCCCGCCCACCCACCCACAATGCAGGA
GGTGGAGATGGAGATGCAGACCGTGGTGCAGGCGCTATGGACGGATGGCG
CGGAGGACGACGCCAAGCACGAGGGCGAGACGGAGCTCCTCACGCAGCAC
CTTGTCTCGCTCGTGCACATGCTCAACCCACTCGAGCCGCCGTCCACAAT
CCTCGACCCGCCTGACGAGAAGGACAAGGGTCTCGTCGCCGCCGCCATCG
CCCGGCTGGCAACCCTTCGGCCCCCCTTCGGTGGTTA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6201:1692..3478-

>mRNA_P-wetherbeei_contig6201.2.1 ID=mRNA_P-wetherbeei_contig6201.2.1|Name=mRNA_P-wetherbeei_contig6201.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1059bp|location=Sequence derived from alignment at P-wetherbeei_contig6201:1692..3478- (Phaeothamnion wetherbeei SAG_119_79)
GTGCTCTCGTTGCATCAGGACACACTTGCGCAAGGAACCGCAAAGAAAAC
TGAGACCGACCGCCGCCTTCATCCCTTCGGACAAGATGTCAGAGCAGAGT
TCCACAAATACTTGACGCACGTTCGGCGAACGGTGGCCACCATGGACGAC
AGGGCCTCGGTCGAGATCGAGGCCCGCCTTGGGCTGGTCCTCGAGGCCGG
CCGCCCCGTGCGGGCCTACCCGCAGGTGCCGGGCTCCGGCGCCGTCACCA
TCACCCGCGAGGATATGCGGGAGCGCCGCTTCGAGTTCCGCACGGGCGTA
AGTGCCCCGTCGTACGACGACATCACGACACGGCTGGCAGTGGCGGGCGG
CCGCGCCGAGCGGTCCGAGGAGCGCGTCTACAGCTACGAGGGCGACACGC
GCTGCATCGTCCGCAGCGGCCGCTTGCGGAGGGAGAAGAAGGAGAAGATC
CCCAACCTGGAACGGACCTTTGCGCTCCCCGGCGCCCCTTACGACCTCCG
CATCACCGTCTCGACGGAAAAGGAGCTGGATCCGCCTGGACTCGACCCGT
CTGCGGACCCGACCTGCAACCAGCACCAGGACCCCGTAGCCGCAGGTTTT
GAGACGGCGCGATCAAAGAAGCGGGACAGCTTGGTTGGCTACCGACTGCC
GTTCATGACCAAGCCGCAGCCGGGCACGGCTGCGGCTGCAAACGAGCCGC
CAGCGCTGTGGCGGGTTGACATGACGCGGGTGGCGTCGGCGTCGGGGGGC
AGCGGAGGCGGCGGCGCGGCGGGGGGCGGCAGCAATGGTGGCCGCGATGA
CGACGAAGAGGCCAACACGCTGGAGGTGGAGATGGAGATGCAGACCGTGG
TGCAGGCGCTATGGACGGATGGCGCGGAGGACGACGCCAAGCACGAGGGC
GAGACGGAGCTCCTCACGCAGCACCTTGTCTCGCTCGTGCACATGCTCAA
CCCACTCGAGCCGCCGTCCACAATCCTCGACCCGCCTGACGAGAAGGACA
AGGGTCTCGTCGCCGCCGCCATCGCCCGGCTGGCAACCCTTCGGCCCCCC
TTCGGTGGT
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