mRNA_P-wetherbeei_contig6191.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6191.2.1
Unique NamemRNA_P-wetherbeei_contig6191.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6191.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6191contigP-wetherbeei_contig6191:1291..2688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1090
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_003220.1
Cds size366
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.4357474-UTR-P-wetherbeei_contig6191:1290..19471683186895.4357474-UTR-P-wetherbeei_contig6191:1290..1947Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6191 1291..1947 -
1683186895.4689488-UTR-P-wetherbeei_contig6191:2621..26881683186895.4689488-UTR-P-wetherbeei_contig6191:2621..2688Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6191 2622..2688 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.444668-CDS-P-wetherbeei_contig6191:1947..20151683186895.444668-CDS-P-wetherbeei_contig6191:1947..2015Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6191 1948..2015 -
1683186895.4529488-CDS-P-wetherbeei_contig6191:2221..24171683186895.4529488-CDS-P-wetherbeei_contig6191:2221..2417Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6191 2222..2417 -
1683186895.460934-CDS-P-wetherbeei_contig6191:2519..26211683186895.460934-CDS-P-wetherbeei_contig6191:2519..2621Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6191 2520..2621 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6191.2.1prot_P-wetherbeei_contig6191.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6191 1948..2621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6191.2.1

>prot_P-wetherbeei_contig6191.2.1 ID=prot_P-wetherbeei_contig6191.2.1|Name=mRNA_P-wetherbeei_contig6191.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=122bp
MAAHAEEYDEEVTYAVIEIPEDVKLEAGEDVELQEASTRQPQLVVHSTCL
NGWIEPIIGTVLSFQAPPAAGAPADCPQTSGTGAAGPTATAAAGPAGAAG
QKDLEFKHRITTRISFEKLRK*
back to top

mRNA from alignment at P-wetherbeei_contig6191:1291..2688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6191.2.1 ID=mRNA_P-wetherbeei_contig6191.2.1|Name=mRNA_P-wetherbeei_contig6191.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1398bp|location=Sequence derived from alignment at P-wetherbeei_contig6191:1291..2688- (Phaeothamnion wetherbeei SAG_119_79)
CTGCGCCGGACGTCCTCCAGCCGTCCTGGGTTCGCTTCGAGGATGCACCC
CATTTCTCGATCCCACGATGGCAGCGCACGCCGAGGAGTACGACGAGGAG
GTCACGTACGCCGTGATTGAGATACCGGAGGACGTGAAGCTGGAAGCTGG
GGAAGATGTGGAGTTGCAGGCGAGCGACATCTTCTCTGTGTCTTTCTTTC
GCCCTTTCAAGCTTAATCTGCACTTCATTCTCACTGTGCCGTGCCTCCTT
CCTTATGGCATCAAAAAGCAGGAAGCTTCGACGCGGCAGCCGCAGCTTGT
TGTGCACAGCACTTGTCTGAACGGATGGATCGAGCCTATCATTGGCACCG
TGCTCTCGTTCCAAGCGCCTCCCGCTGCTGGGGCTCCCGCTGATTGCCCG
CAAACGAGCGGTACGGGTGCAGCAGGGCCGACGGCGACGGCAGCAGCAGG
ACCAGCAGGAGCAGCAGGCGCGTAGCCTTTCGACGTTCCCCCCCCCCCCT
TCCCTCCCTCTCTCGTCTGTTCGAATCTCTAAGCTCTGAACTGCGGCATT
TGGGAACCACTTGTGTATGCTGTGTACATTTCAGCCAGCGTGTCTCTTGG
TACTAGATAGTATCCTGGACCTCACTCAAGATTGCCATCACGTATATTCG
AACCTCCCTGCCTCTCTTATCAGGCCAAAAGGACCTTGAATTCAAGCACC
GGATCACGACGCGCATTTCATTTGAAAAGCTGAGGAAATGATGAAGACAT
GGGCGCCAGAGCTCGCTATCATTCAGCACATTGGAGCCTTATCCTACAGA
GCTCCGTACCGCAGCTGCCACCGAAAGAGCTTCTCCCCAAAGCACGCAAG
CGACGGGCGTCGCCGCAGCAGCGATTTCGACGCTGCAACTCGTTGGCGCC
GCGTCGCCTTCATTTGGCACCCGCATCAACTTCGACCTCGGTGCCTCATA
CATCACGCTGAGTGATGCTCTCCTGGACGGGCAACCACTTCCTGCCACGC
GGCGCGTGCACAAGCGACGACTCCGCATCGGCGCGACTCACGCGTTCGCC
CCATTTGCGTTGGCGCATTTCGCTGCGAGAGCGTTTTGGGAGGGGGTTCG
GCCTTCCGCCCCTTGCCAGTGGTCTGCTACGTCAGTGATTCCCCCCTGGC
AGCTGCCTGCTGCGGCGTCGGAGTGCACCACCACCCTGGGCAGGTGACTA
AGACATTTGGGCCGGTCAAAAGAAGGAAAAAAGAGTCTTCTCTACATCTC
TTATCCGTCGTCTGAGACGGTTTCCCATCGTGTTCGTTGCACCTCTTATT
TCACGAACGAATTGGCAGCATGTCTCGCGCCTGAGCGGTGCAACAGCACA
ATGTCGCAGCAAAAAGCCGTGTGGAAAAAGACAATTTACGTTTAACAT
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6191:1291..2688-

>mRNA_P-wetherbeei_contig6191.2.1 ID=mRNA_P-wetherbeei_contig6191.2.1|Name=mRNA_P-wetherbeei_contig6191.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=366bp|location=Sequence derived from alignment at P-wetherbeei_contig6191:1291..2688- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGCGCACGCCGAGGAGTACGACGAGGAGGTCACGTACGCCGTGAT
TGAGATACCGGAGGACGTGAAGCTGGAAGCTGGGGAAGATGTGGAGTTGC
AGGAAGCTTCGACGCGGCAGCCGCAGCTTGTTGTGCACAGCACTTGTCTG
AACGGATGGATCGAGCCTATCATTGGCACCGTGCTCTCGTTCCAAGCGCC
TCCCGCTGCTGGGGCTCCCGCTGATTGCCCGCAAACGAGCGGTACGGGTG
CAGCAGGGCCGACGGCGACGGCAGCAGCAGGACCAGCAGGAGCAGCAGGC
CAAAAGGACCTTGAATTCAAGCACCGGATCACGACGCGCATTTCATTTGA
AAAGCTGAGGAAATGA
back to top