mRNA_P-wetherbeei_contig619.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig619.7.1
Unique NamemRNA_P-wetherbeei_contig619.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig619.7.1 vs. uniprot
Match: A0A7S4DAX6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAX6_HETAK)

HSP 1 Score: 86.3 bits (212), Expect = 3.290e-18
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 1 
Query:    1 PRLSLATLRW---------RTGAVFVKLMERHGFVIITDCGPLQERYSRLLVQLHRFFDHEDTAIKASLQGGIYFNERGIPMWRTGYETDSMREIFRVHTGALATQ 291
            PR+ L  LR          +  + F  L++RHGFV++TD G ++  Y+ L+ +   F ++ D   K  L+G +YFNERG+PMW TGYE   MRE  R    A   Q
Sbjct:   19 PRMKLNELRHLSIVNNNQQKNQSKFANLIQRHGFVVLTDIGIVENNYNALIAEFQNFIENNDRQEKEKLKGPVYFNERGVPMWATGYERMPMREAVRARAAAPHAQ 124
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BLAST of mRNA_P-wetherbeei_contig619.7.1 vs. uniprot
Match: D7FWG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWG5_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 7.930e-13
Identity = 34/76 (44.74%), Postives = 48/76 (63.16%), Query Frame = 1 
Query:   58 MERHGFVIITDCGPLQERYSRLLVQLHRFFDHEDTAIKASLQGGIYFNERGIPMWRTGYETDSM-REIFRVHTGAL 282
            MERHGFV++T+ G +++ Y   +  L  FFD   +  K + +G ++FNERGIPMW TGYE   + RE+FR    A 
Sbjct:    1 MERHGFVVLTETGAIRDAYLEFMELLKAFFDG-GSGWKEAFKGRVHFNERGIPMWHTGYEKCGIVREVFRAPASAF 75
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BLAST of mRNA_P-wetherbeei_contig619.7.1 vs. uniprot
Match: A0A836CDG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CDG4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.240e-9
Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  100 LQERYSRLLVQLHRFFDHEDTAIKASLQGGIYFNERGIPMWRTGYET-DSMREIFRVHTGALATQASW 300
            ++  Y  L+ QL RFFD      K   +G IYFNERG+PMW+TG+E    MR+ FR+H G  A + SW
Sbjct:   94 VESAYLDLIAQLQRFFD-APLDDKLRCRGDIYFNERGVPMWQTGFEKCGEMRQAFRIHAGH-ADRQSW 159
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BLAST of mRNA_P-wetherbeei_contig619.7.1 vs. uniprot
Match: A0A8J2ST94_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2ST94_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.720e-7
Identity = 33/91 (36.26%), Postives = 51/91 (56.04%), Query Frame = 1 
Query:    1 PRLSLATLRWRTGAVFVKLMERHGFVIITDCGP-LQERYSRLLVQLHRFFDHEDTAIKASLQGGIYFNERGIPMWRTGYETDS-MREIFRV 267
            PR+ LA      G   ++L+++HG+ + T+ G  L+   + +  +L  FF  + T  K    G +Y NERG+PM+R GYE    +RE FRV
Sbjct:   21 PRIPLAAAASAHG---IQLLKKHGYFVATEIGAALENDVATIETELENFFA-KSTERKEKCMGTVYANERGLPMFRRGYERQQHVRECFRV 107
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig619.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S4DAX6_HETAK3.290e-1838.68Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
D7FWG5_ECTSI7.930e-1344.74Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CDG4_9STRA5.240e-947.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J2ST94_9STRA2.720e-736.26Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig619contigP-wetherbeei_contig619:8422..8931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog112098.XP_008610407.1
PFAMs2OG-FeII_Oxy
Model size303
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.71e-21
EggNOG OGs29HEZ@1|root,2RQMK@2759|Eukaryota
Ec32 ortholog descriptionIsopenicillin N synthase-like
Ec32 orthologEc-07_007420.1
Cds size303
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186895.280263-CDS-P-wetherbeei_contig619:8421..85861683186895.280263-CDS-P-wetherbeei_contig619:8421..8586Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig619 8422..8586 +
1683186895.290012-CDS-P-wetherbeei_contig619:8793..89311683186895.290012-CDS-P-wetherbeei_contig619:8793..8931Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig619 8794..8931 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig619.7.1prot_P-wetherbeei_contig619.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig619 8422..8931 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig619.7.1

>prot_P-wetherbeei_contig619.7.1 ID=prot_P-wetherbeei_contig619.7.1|Name=mRNA_P-wetherbeei_contig619.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=101bp
PRLSLATLRWRTGAVFVKLMERHGFVIITDCGPLQERYSRLLVQLHRFFD
HEDTAIKASLQGGIYFNERGIPMWRTGYETDSMREIFRVHTGALATQASW
*
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mRNA from alignment at P-wetherbeei_contig619:8422..8931+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig619.7.1 ID=mRNA_P-wetherbeei_contig619.7.1|Name=mRNA_P-wetherbeei_contig619.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=510bp|location=Sequence derived from alignment at P-wetherbeei_contig619:8422..8931+ (Phaeothamnion wetherbeei SAG_119_79)
CCAAGACTTTCCCTCGCGACGCTTCGGTGGCGAACAGGCGCTGTCTTTGT
CAAGCTGATGGAACGGCATGGATTCGTGATTATTACGGACTGCGGACCCT
TACAGGAGCGGTACTCCCGCCTTTTAGTTCAGTTGCACCGGTTTTTCGAC
CACGAAGACACTGCGGTGAGAGCTCTTTTCCTGTCGCGTTTTTGCCTGAC
GCGTCCTCTGTTGCGGCCGAACGGAAGAGGAGCTTCGCTTCTATCAGCCA
TTCGCTGTTTTCGAACCCATACGTGTATTTGGTTGCTTCTTTCTCAAACT
GCTACAGTACTGCTTCTCACTTCTCCCCGCTAATTTCTTTCGCTTGCGGC
GCCTTCTTCGCTTCTCCTGCAGATCAAGGCATCGCTCCAGGGCGGCATTT
ACTTCAACGAAAGAGGCATTCCAATGTGGCGGACGGGCTATGAGACGGAC
TCGATGCGGGAGATCTTCCGTGTCCACACCGGAGCGTTGGCCACGCAGGC
GAGTTGGTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig619:8422..8931+

>mRNA_P-wetherbeei_contig619.7.1 ID=mRNA_P-wetherbeei_contig619.7.1|Name=mRNA_P-wetherbeei_contig619.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=303bp|location=Sequence derived from alignment at P-wetherbeei_contig619:8422..8931+ (Phaeothamnion wetherbeei SAG_119_79)
CCAAGACTTTCCCTCGCGACGCTTCGGTGGCGAACAGGCGCTGTCTTTGT
CAAGCTGATGGAACGGCATGGATTCGTGATTATTACGGACTGCGGACCCT
TACAGGAGCGGTACTCCCGCCTTTTAGTTCAGTTGCACCGGTTTTTCGAC
CACGAAGACACTGCGATCAAGGCATCGCTCCAGGGCGGCATTTACTTCAA
CGAAAGAGGCATTCCAATGTGGCGGACGGGCTATGAGACGGACTCGATGC
GGGAGATCTTCCGTGTCCACACCGGAGCGTTGGCCACGCAGGCGAGTTGG
TAA
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