mRNA_P-wetherbeei_contig6186.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6186.1.1
Unique NamemRNA_P-wetherbeei_contig6186.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6186.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6186contigP-wetherbeei_contig6186:361..2372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1794
Hectar predicted targeting categoryother localisation
Exons2
Cds size1794
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186894.8136888-CDS-P-wetherbeei_contig6186:360..6081683186894.8136888-CDS-P-wetherbeei_contig6186:360..608Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6186 361..608 -
1683186894.8304763-CDS-P-wetherbeei_contig6186:826..23721683186894.8304763-CDS-P-wetherbeei_contig6186:826..2372Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6186 827..2372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6186.1.1prot_P-wetherbeei_contig6186.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6186 361..2372 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6186.1.1

>prot_P-wetherbeei_contig6186.1.1 ID=prot_P-wetherbeei_contig6186.1.1|Name=mRNA_P-wetherbeei_contig6186.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=598bp
MLAYRLLKQQRLCEKAAWAEIGEERLRYEQKREHKVQTARQSCFGFPAAA
VPVRPRPRFGAGSANGPAPAASTERRSPPLRDQNLHNADNTAAVLAAKAS
PSVHRVTGNEPLHDLKEVPASGRPFARTGRGHDGARRDAAPIIASRRAPS
LIPATGSGGAAAVAAAAACATRPFTDAVTTTATTAPAETEKKRSRPRKKD
RTAANAFLRGVVVCAVPHADAVTLYKIKSVWQKQVKLAGGILLRADQYDA
AAVTHVVANPKMPPGELAASLHNWSAPPAAAAGAVAAVAAGAAASASGHR
AACARFAAAPGKLLLDYRWLIDCIKEGRRVQEASYGLASGGGVPAAADSA
AAAATAARYAAASSGSERDGEGEDRSGKRRRLRSLNGDDGGSDSDAATPT
DRARRQRFRGDGVGHRDSRKERAIAAAVAAASATIPGSSGAAWDGPATLL
PPPPLPRLHLSRGSSVGRGQSRVAGVELAPPIADKWPRWMKRKWNGDSTW
RRGGGGDDDDTDEETAFSWDERSVMRGGTIVRVNGVAVEPRDFHAPIDAR
EADILRQQRLTTFLRPRSAPPMVGPDGSGAALARRGAFACQWMPPSPP
back to top

mRNA from alignment at P-wetherbeei_contig6186:361..2372-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6186.1.1 ID=mRNA_P-wetherbeei_contig6186.1.1|Name=mRNA_P-wetherbeei_contig6186.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2012bp|location=Sequence derived from alignment at P-wetherbeei_contig6186:361..2372- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCTTATCGCCTCCTCAAGCAGCAAAGGCTGTGCGAAAAGGCTGC
CTGGGCTGAGATCGGGGAGGAGAGATTGCGCTACGAGCAAAAACGGGAGC
ACAAGGTCCAAACGGCGCGTCAGAGCTGCTTTGGCTTTCCTGCTGCTGCT
GTTCCTGTGCGTCCACGCCCACGCTTCGGCGCCGGCAGTGCGAACGGCCC
TGCGCCAGCCGCGTCCACTGAGCGACGGAGTCCGCCTCTGAGAGACCAAA
ACCTCCACAACGCGGACAATACAGCAGCAGTACTCGCAGCAAAGGCATCG
CCCTCGGTTCACAGAGTCACGGGGAATGAGCCTCTTCACGACCTGAAGGA
GGTTCCTGCCTCGGGAAGGCCCTTCGCTAGGACTGGAAGGGGTCATGACG
GCGCCCGCCGCGACGCCGCCCCAATAATAGCCAGCAGACGGGCGCCATCC
CTGATCCCGGCAACTGGCAGCGGTGGCGCCGCGGCCGTCGCCGCCGCCGC
GGCGTGCGCGACACGGCCTTTTACTGATGCCGTCACCACGACCGCAACAA
CCGCCCCTGCCGAAACGGAGAAGAAGCGGAGCCGGCCCAGGAAGAAGGAC
CGGACGGCCGCAAACGCCTTTCTTAGAGGCGTCGTTGTCTGCGCCGTCCC
CCACGCCGACGCCGTGACGCTCTACAAGATTAAGAGCGTATGGCAAAAGC
AGGTGAAGCTCGCCGGCGGCATTCTGCTGCGCGCGGATCAGTACGACGCC
GCCGCCGTGACGCACGTCGTTGCCAATCCCAAAATGCCGCCGGGAGAGCT
CGCCGCGAGCCTCCATAACTGGTCTGCCCCCCCTGCCGCCGCCGCTGGTG
CTGTCGCTGCCGTTGCCGCTGGGGCTGCCGCCTCCGCCTCCGGTCACCGT
GCGGCTTGCGCCAGATTCGCGGCGGCGCCGGGAAAGTTGCTGCTGGACTA
CCGATGGCTCATCGACTGCATCAAAGAGGGTCGCCGCGTCCAGGAAGCGT
CGTATGGTTTGGCTTCGGGCGGCGGCGTGCCTGCCGCGGCGGATTCGGCG
GCGGCGGCGGCGACGGCAGCAAGGTATGCGGCGGCGTCATCGGGGTCGGA
ACGAGACGGGGAGGGAGAGGACAGGTCGGGGAAGCGTCGCCGGCTGCGTT
CGCTCAATGGCGACGATGGCGGCAGCGACAGTGACGCCGCGACGCCCACG
GATCGCGCGCGGCGTCAGCGCTTCCGCGGCGACGGCGTTGGCCACAGGGA
CAGCCGGAAGGAGCGTGCCATTGCCGCCGCCGTCGCTGCCGCTTCAGCCA
CCATCCCCGGGTCGTCGGGAGCTGCGTGGGACGGCCCGGCGACTTTGCTG
CCTCCGCCACCGCTGCCGCGGCTGCATCTCAGCCGTGGAAGCAGCGTCGG
CAGAGGCCAGTCGCGCGTAGCTGGGGTCGAGCTGGCTCCGCCAATTGCGG
ACAAATGGCCGCGATGGATGAAGCGGAAGTGGAACGGTGACAGCACTTGG
CGCCGGGGTGGCGGCGGCGACGACGACGATACGGATGAAGAGACAGGTAA
GGGCGGACAGGTGCTTTTGGGTTCAAGTCGGTACTTTGCGGCGGCGCTGT
GGATTTAAGAGTGATGGTCGAGAATTCCGGTTTTTGATTCGATTTTTAAT
CTGGCGATGGCCTCGGAAGATTATTTCCAGGGTGCTTTCCTTCCGTGGTC
TGTCGTTGCAACGCAAAGACAGAAAACCAGAACACTCCTGTCCCACCCTC
AAATCCCCGGACAGCGTTCTCCTGGGACGAGCGCTCCGTCATGCGGGGCG
GCACCATCGTCCGCGTCAACGGCGTCGCCGTCGAGCCGCGCGACTTCCAT
GCGCCCATCGACGCCCGCGAGGCGGACATATTGCGGCAGCAGCGGCTGAC
GACCTTCCTGCGACCACGCAGCGCGCCGCCGATGGTGGGGCCGGACGGGT
CTGGCGCGGCGCTTGCGCGGCGCGGTGCCTTTGCCTGCCAGTGGATGCCG
CCGTCGCCGCCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6186:361..2372-

>mRNA_P-wetherbeei_contig6186.1.1 ID=mRNA_P-wetherbeei_contig6186.1.1|Name=mRNA_P-wetherbeei_contig6186.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1794bp|location=Sequence derived from alignment at P-wetherbeei_contig6186:361..2372- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGGCTTATCGCCTCCTCAAGCAGCAAAGGCTGTGCGAAAAGGCTGC
CTGGGCTGAGATCGGGGAGGAGAGATTGCGCTACGAGCAAAAACGGGAGC
ACAAGGTCCAAACGGCGCGTCAGAGCTGCTTTGGCTTTCCTGCTGCTGCT
GTTCCTGTGCGTCCACGCCCACGCTTCGGCGCCGGCAGTGCGAACGGCCC
TGCGCCAGCCGCGTCCACTGAGCGACGGAGTCCGCCTCTGAGAGACCAAA
ACCTCCACAACGCGGACAATACAGCAGCAGTACTCGCAGCAAAGGCATCG
CCCTCGGTTCACAGAGTCACGGGGAATGAGCCTCTTCACGACCTGAAGGA
GGTTCCTGCCTCGGGAAGGCCCTTCGCTAGGACTGGAAGGGGTCATGACG
GCGCCCGCCGCGACGCCGCCCCAATAATAGCCAGCAGACGGGCGCCATCC
CTGATCCCGGCAACTGGCAGCGGTGGCGCCGCGGCCGTCGCCGCCGCCGC
GGCGTGCGCGACACGGCCTTTTACTGATGCCGTCACCACGACCGCAACAA
CCGCCCCTGCCGAAACGGAGAAGAAGCGGAGCCGGCCCAGGAAGAAGGAC
CGGACGGCCGCAAACGCCTTTCTTAGAGGCGTCGTTGTCTGCGCCGTCCC
CCACGCCGACGCCGTGACGCTCTACAAGATTAAGAGCGTATGGCAAAAGC
AGGTGAAGCTCGCCGGCGGCATTCTGCTGCGCGCGGATCAGTACGACGCC
GCCGCCGTGACGCACGTCGTTGCCAATCCCAAAATGCCGCCGGGAGAGCT
CGCCGCGAGCCTCCATAACTGGTCTGCCCCCCCTGCCGCCGCCGCTGGTG
CTGTCGCTGCCGTTGCCGCTGGGGCTGCCGCCTCCGCCTCCGGTCACCGT
GCGGCTTGCGCCAGATTCGCGGCGGCGCCGGGAAAGTTGCTGCTGGACTA
CCGATGGCTCATCGACTGCATCAAAGAGGGTCGCCGCGTCCAGGAAGCGT
CGTATGGTTTGGCTTCGGGCGGCGGCGTGCCTGCCGCGGCGGATTCGGCG
GCGGCGGCGGCGACGGCAGCAAGGTATGCGGCGGCGTCATCGGGGTCGGA
ACGAGACGGGGAGGGAGAGGACAGGTCGGGGAAGCGTCGCCGGCTGCGTT
CGCTCAATGGCGACGATGGCGGCAGCGACAGTGACGCCGCGACGCCCACG
GATCGCGCGCGGCGTCAGCGCTTCCGCGGCGACGGCGTTGGCCACAGGGA
CAGCCGGAAGGAGCGTGCCATTGCCGCCGCCGTCGCTGCCGCTTCAGCCA
CCATCCCCGGGTCGTCGGGAGCTGCGTGGGACGGCCCGGCGACTTTGCTG
CCTCCGCCACCGCTGCCGCGGCTGCATCTCAGCCGTGGAAGCAGCGTCGG
CAGAGGCCAGTCGCGCGTAGCTGGGGTCGAGCTGGCTCCGCCAATTGCGG
ACAAATGGCCGCGATGGATGAAGCGGAAGTGGAACGGTGACAGCACTTGG
CGCCGGGGTGGCGGCGGCGACGACGACGATACGGATGAAGAGACAGCGTT
CTCCTGGGACGAGCGCTCCGTCATGCGGGGCGGCACCATCGTCCGCGTCA
ACGGCGTCGCCGTCGAGCCGCGCGACTTCCATGCGCCCATCGACGCCCGC
GAGGCGGACATATTGCGGCAGCAGCGGCTGACGACCTTCCTGCGACCACG
CAGCGCGCCGCCGATGGTGGGGCCGGACGGGTCTGGCGCGGCGCTTGCGC
GGCGCGGTGCCTTTGCCTGCCAGTGGATGCCGCCGTCGCCGCCC
back to top