mRNA_P-wetherbeei_contig6183.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6183.2.1
Unique NamemRNA_P-wetherbeei_contig6183.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6183.2.1 vs. uniprot
Match: A0A1F4EVD1_9PROT (SnoaL-like domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4EVD1_9PROT)

HSP 1 Score: 196 bits (499), Expect = 3.090e-62
Identity = 96/144 (66.67%), Postives = 109/144 (75.69%), Query Frame = 1
Query:    7 MRQSAFPTPQDAENAFYDALERADLDAMMAVWAEDEEIVCVHPTGPRLAGHEQVRESWRQIFSGGGGVRIHVTQLVATQAMMVAVHSLHENAPAPEGQRTGASVVATNVYLRTAAGWRMIVHHASHAPGQPRAARAEAPPKLLH 438
            M    FPT QDAENAFY+ALERADL+ MMAVWAEDEEI+CVHPTGPRL+G +QVR SW +IF+ G G R+  TQ VA   MM+AVHS+HEN       R+   VVATNVYLRTAAGWRMIVHHAS AP Q  +A  +APPK LH
Sbjct:    1 MTSKIFPTAQDAENAFYEALERADLEGMMAVWAEDEEIICVHPTGPRLSGQDQVRASWAKIFAAGAGPRVQTTQQVAITGMMIAVHSVHENFTVEGEARSQIPVVATNVYLRTAAGWRMIVHHASPAPAQTESAPRDAPPKFLH 144          
BLAST of mRNA_P-wetherbeei_contig6183.2.1 vs. uniprot
Match: A0A1F4F434_9PROT (DUF4440 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 TaxID=1797505 RepID=A0A1F4F434_9PROT)

HSP 1 Score: 196 bits (497), Expect = 6.230e-62
Identity = 98/144 (68.06%), Postives = 111/144 (77.08%), Query Frame = 1
Query:    7 MRQSAFPTPQDAENAFYDALERADLDAMMAVWAEDEEIVCVHPTGPRLAGHEQVRESWRQIFSGGGGVRIHVTQLVATQAMMVAVHSLHENAPAPEGQRTGASVVATNVYLRTAAGWRMIVHHASHAPGQPRAARAEAPPKLLH 438
            M    FPT QDAE AFY+ALERADL+AMMAVWAEDEEI+CVHPTGPRL G +QVR SW ++FSG   VR++VTQ VA  AMM+AVHS+HEN       R  A +VATN+Y+RTAAGWRMIVHHAS APGQ  AA  EA PK LH
Sbjct:    1 MTGKIFPTAQDAEAAFYEALERADLEAMMAVWAEDEEILCVHPTGPRLTGPDQVRSSWAKMFSGAQRVRVNVTQQVAISAMMIAVHSVHENFSVEGDPRPRAPIVATNIYIRTAAGWRMIVHHASPAPGQAEAAPREARPKTLH 144          
BLAST of mRNA_P-wetherbeei_contig6183.2.1 vs. uniprot
Match: A0A536X597_9PROT (DUF4440 domain-containing protein n=2 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536X597_9PROT)

HSP 1 Score: 194 bits (493), Expect = 6.260e-61
Identity = 101/151 (66.89%), Postives = 115/151 (76.16%), Query Frame = 1
Query:    1 RTMRQSAFPTPQDAENAFYDALERADLDAMMAVWAEDEEIVCVHPTGPRLAGHEQVRESWRQIFSGGGGVRIHVTQLVATQAMMVAVHSLHENAPAPEGQRTGAS----VVATNVYLRTAAGWRMIVHHASHAPGQP-RAARAEAPPKLLH 438
            R +    FPT QDAENAFY+ALER DL+AMMAVWAEDEEI+CVHPTGPRL G +Q+RESW +IFSGG   R+H+T  VA   MM+AVHS+HEN    EGQR   +    VVATNVYLRTAAGWRMIVHHAS AP +  +AA  EAPPK LH
Sbjct:   23 RAVTARIFPTAQDAENAFYEALERCDLEAMMAVWAEDEEIICVHPTGPRLTGPDQIRESWARIFSGGPRARVHITNQVALSGMMLAVHSVHENFTL-EGQRQADARPLPVVATNVYLRTAAGWRMIVHHASPAPAEKEQAAAPEAPPKTLH 172          
BLAST of mRNA_P-wetherbeei_contig6183.2.1 vs. uniprot
Match: A0A537EAG1_9PROT (DUF4440 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537EAG1_9PROT)

HSP 1 Score: 192 bits (487), Expect = 6.830e-60
Identity = 91/146 (62.33%), Postives = 106/146 (72.60%), Query Frame = 1
Query:    1 RTMRQSAFPTPQDAENAFYDALERADLDAMMAVWAEDEEIVCVHPTGPRLAGHEQVRESWRQIFSGGGGVRIHVTQLVATQAMMVAVHSLHENAPAPEGQRTGASVVATNVYLRTAAGWRMIVHHASHAPGQPRAARAEAPPKLLH 438
            R +    FP  QDAENAFY+ALER DLD MMAVWAEDE+IVC+HPTGPRL G ++VR  W +IF+GG G R+  +  VA   MM+AVHS+HEN       R    V+ATNVYLRT AGWRMIVHHAS AP QP AA  +APPK+LH
Sbjct:   36 RPVSSKIFPAAQDAENAFYEALERCDLDGMMAVWAEDEDIVCIHPTGPRLTGQDEVRSGWARIFAGGPGARVQTSLQVAISGMMIAVHSVHENFTVEGDPRPRPPVIATNVYLRTPAGWRMIVHHASPAPAQPEAASRDAPPKILH 181          
BLAST of mRNA_P-wetherbeei_contig6183.2.1 vs. uniprot
Match: A0A537DQT0_9PROT (DUF4440 domain-containing protein n=3 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A537DQT0_9PROT)

HSP 1 Score: 187 bits (474), Expect = 1.970e-58
Identity = 90/144 (62.50%), Postives = 104/144 (72.22%), Query Frame = 1
Query:    7 MRQSAFPTPQDAENAFYDALERADLDAMMAVWAEDEEIVCVHPTGPRLAGHEQVRESWRQIFSGGGGVRIHVTQLVATQAMMVAVHSLHENAPAPEGQRTGASVVATNVYLRTAAGWRMIVHHASHAPGQPRAARAEAPPKLLH 438
            M    FP  QDAENAFY+ALER DLD MMAVWAEDE+IVC+HPTGPRL G ++VR  W +IF+GG G R+  +  VA   MM+AVHS+HEN       R    V+ATNVYLRT AGWRMIVHHAS AP Q  AA  +APPK+LH
Sbjct:    1 MSSKIFPAAQDAENAFYEALERCDLDGMMAVWAEDEDIVCIHPTGPRLTGQDEVRRGWARIFAGGPGARVQTSLQVAISGMMLAVHSVHENFTVEGDPRPRPPVIATNVYLRTPAGWRMIVHHASPAPAQLEAAPRDAPPKILH 144          
BLAST of mRNA_P-wetherbeei_contig6183.2.1 vs. uniprot
Match: A0A536SVY5_9PROT (DUF4440 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536SVY5_9PROT)

HSP 1 Score: 187 bits (476), Expect = 2.330e-58
Identity = 94/142 (66.20%), Postives = 107/142 (75.35%), Query Frame = 1
Query:   22 FPTPQDAENAFYDALERADLDAMMAVWAEDEEIVCVHPTGPRLAGHEQVRESWRQIFSGGGGVRIHVTQLVATQAMMVAVHSLHENAPAPEGQRTGAS---VVATNVYLRTAAGWRMIVHHASHAPGQPRAARAEAPPKLLH 438
            FPT Q+AENAFY+ALER DL+ MMAVWAED+EI+CVHPTGPRL G EQ+RESW +IFSGG   R+HVT  VA   MM+AVHS+HEN   P   +  A    +VATNVYLRT AGWRMIVHHAS AP +   A AE  PKLLH
Sbjct:   30 FPTAQEAENAFYEALERCDLEGMMAVWAEDDEIICVHPTGPRLTGPEQIRESWARIFSGGPRARVHVTSQVAISGMMLAVHSVHENFVLPGQAQADARPVPIVATNVYLRTPAGWRMIVHHASPAPAEKPPAAAEPHPKLLH 171          
BLAST of mRNA_P-wetherbeei_contig6183.2.1 vs. uniprot
Match: A0A177QT69_9PROT (SnoaL-like domain-containing protein n=1 Tax=Betaproteobacteria bacterium SCGC AG-212-J23 TaxID=1799662 RepID=A0A177QT69_9PROT)

HSP 1 Score: 181 bits (458), Expect = 6.110e-56
Identity = 94/148 (63.51%), Postives = 107/148 (72.30%), Query Frame = 1
Query:    7 MRQSAFPTPQDAENAFYDALERADLDAMMAVWAEDEEIVCVHPTGPRLAGHEQVRESWRQIFSGGGGVRIHVTQLVATQAMMVAVHSLHENAP---APEGQRTGASVVATNVYLRTAAGWRMIVHHASHAPGQPRAARA-EAPPKLLH 438
            M    FPT QDAENAFY+ALER DL+ MMAVWAEDE+++CVHPTG RL G +QVRESW Q+F+ G   R+ VTQ VA  AMM+AVHS+ EN     A  G      +VATNVYLRTAAGWRMIVHHAS AP QP      +APPKLLH
Sbjct:    1 MSAKIFPTAQDAENAFYEALERCDLEGMMAVWAEDEDVLCVHPTGGRLTGQDQVRESWAQMFAAGPRARLQVTQQVAISAMMLAVHSVFENFSLEGAAPGDARPLPIVATNVYLRTAAGWRMIVHHASPAPAQPXXXXXRQAPPKLLH 148          
BLAST of mRNA_P-wetherbeei_contig6183.2.1 vs. uniprot
Match: A0A1F3YCY7_9PROT (DUF4440 domain-containing protein n=1 Tax=Betaproteobacteria bacterium RBG_16_66_20 TaxID=1797479 RepID=A0A1F3YCY7_9PROT)

HSP 1 Score: 178 bits (451), Expect = 6.040e-55
Identity = 90/144 (62.50%), Postives = 105/144 (72.92%), Query Frame = 1
Query:    7 MRQSAFPTPQDAENAFYDALERADLDAMMAVWAEDEEIVCVHPTGPRLAGHEQVRESWRQIFSGGGGVRIHVTQLVATQAMMVAVHSLHENAPAPEGQRTGASVVATNVYLRTAAGWRMIVHHASHAPGQPRAARAEAPPKLLH 438
            M    FPT QDAENAFY+ALER DL+AMMAVW+ED++IVCVHP G RLAG EQVRE WRQ+FS G  +R+ + Q +    MM+AVHS+HE+      QR    +VATNVYLRTAAGWRMIVHHAS A   P A  A A PK+LH
Sbjct:    1 MSAKIFPTAQDAENAFYEALERCDLEAMMAVWSEDDDIVCVHPAGQRLAGQEQVREVWRQMFSSGPNMRVQIAQQLVIPGMMLAVHSVHESITVAGEQRPRPPMVATNVYLRTAAGWRMIVHHASPAQA-PAAEAAPAEPKILH 143          
BLAST of mRNA_P-wetherbeei_contig6183.2.1 vs. uniprot
Match: A0A536Z9Y1_9PROT (DUF4440 domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A536Z9Y1_9PROT)

HSP 1 Score: 175 bits (444), Expect = 6.800e-54
Identity = 88/144 (61.11%), Postives = 107/144 (74.31%), Query Frame = 1
Query:    7 MRQSAFPTPQDAENAFYDALERADLDAMMAVWAEDEEIVCVHPTGPRLAGHEQVRESWRQIFSGGGGVRIHVTQLVATQAMMVAVHSLHENAPAPEGQRTGASVVATNVYLRTAAGWRMIVHHASHAPGQPRAARAEAPPKLLH 438
            M++S FPTPQDAE AFY+ALE  +LDAMM VWAEDEEIVCVHP G RLAG++QVRESW QIF+ G  +++H++  V    MM+A+HS+HEN       R+   V ATNVYLRT  GWRMI+HH S AP  PRA  AE+P K+LH
Sbjct:    1 MKKSTFPTPQDAEAAFYEALEAGELDAMMEVWAEDEEIVCVHPGGARLAGYDQVRESWAQIFASGQRLKVHISNQVVLSGMMLAIHSVHENILVQGEPRSRPPVAATNVYLRTGNGWRMILHHGSPAPQAPRAP-AESP-KILH 142          
BLAST of mRNA_P-wetherbeei_contig6183.2.1 vs. uniprot
Match: A0A1F4FF55_9PROT (SnoaL-like domain-containing protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4FF55_9PROT)

HSP 1 Score: 174 bits (442), Expect = 1.410e-53
Identity = 91/144 (63.19%), Postives = 102/144 (70.83%), Query Frame = 1
Query:    7 MRQSAFPTPQDAENAFYDALERADLDAMMAVWAEDEEIVCVHPTGPRLAGHEQVRESWRQIFSGGGGVRIHVTQLVATQAMMVAVHSLHENAPAPEGQRTGASVVATNVYLRTAAGWRMIVHHASHAPGQPRAARAEAPPKLLH 438
            M    FPT QDAENAFY+ALER DL+ MMAVWAEDE+IVCVHPTGPRLAG E VR+SWR+IF+ G  +R  V Q V    MMV VHS+HE       +R   +VVATNVYLRTAAGWRMIVHH S APG       E P K+LH
Sbjct:    1 MSTRIFPTAQDAENAFYEALERNDLELMMAVWAEDEDIVCVHPTGPRLAGQEPVRDSWRRIFASGQRLRFQVAQQVTLAGMMVVVHSVHEIITVVGEKRPRPAVVATNVYLRTAAGWRMIVHHTSPAPGASSDPPPEVP-KILH 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6183.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1F4EVD1_9PROT3.090e-6266.67SnoaL-like domain-containing protein n=2 Tax=uncla... [more]
A0A1F4F434_9PROT6.230e-6268.06DUF4440 domain-containing protein n=1 Tax=Betaprot... [more]
A0A536X597_9PROT6.260e-6166.89DUF4440 domain-containing protein n=2 Tax=Betaprot... [more]
A0A537EAG1_9PROT6.830e-6062.33DUF4440 domain-containing protein n=1 Tax=Betaprot... [more]
A0A537DQT0_9PROT1.970e-5862.50DUF4440 domain-containing protein n=3 Tax=Betaprot... [more]
A0A536SVY5_9PROT2.330e-5866.20DUF4440 domain-containing protein n=1 Tax=Betaprot... [more]
A0A177QT69_9PROT6.110e-5663.51SnoaL-like domain-containing protein n=1 Tax=Betap... [more]
A0A1F3YCY7_9PROT6.040e-5562.50DUF4440 domain-containing protein n=1 Tax=Betaprot... [more]
A0A536Z9Y1_9PROT6.800e-5461.11DUF4440 domain-containing protein n=1 Tax=Betaprot... [more]
A0A1F4FF55_9PROT1.410e-5363.19SnoaL-like domain-containing protein n=2 Tax=uncla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6183contigP-wetherbeei_contig6183:380..820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog748247.AZKH_1028
PFAMsSnoaL_3
Model size441
Max annot lvl206389|Rhodocyclales
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.44e-40
EggNOG OGsCOG3631@1|root,COG3631@2|Bacteria,1QXIX@1224|Proteobacteria,2WH4R@28216|Betaproteobacteria,2KZY7@206389|Rhodocyclales
DescriptionSnoaL-like domain
Cds size435
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186894.5046513-CDS-P-wetherbeei_contig6183:379..8141683186894.5046513-CDS-P-wetherbeei_contig6183:379..814Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6183 380..814 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186894.514563-UTR-P-wetherbeei_contig6183:814..8201683186894.514563-UTR-P-wetherbeei_contig6183:814..820Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6183 815..820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6183.2.1prot_P-wetherbeei_contig6183.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6183 380..814 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6183.2.1

>prot_P-wetherbeei_contig6183.2.1 ID=prot_P-wetherbeei_contig6183.2.1|Name=mRNA_P-wetherbeei_contig6183.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=145bp
MRQSAFPTPQDAENAFYDALERADLDAMMAVWAEDEEIVCVHPTGPRLAG
HEQVRESWRQIFSGGGGVRIHVTQLVATQAMMVAVHSLHENAPAPEGQRT
GASVVATNVYLRTAAGWRMIVHHASHAPGQPRAARAEAPPKLLH*
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mRNA from alignment at P-wetherbeei_contig6183:380..820-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6183.2.1 ID=mRNA_P-wetherbeei_contig6183.2.1|Name=mRNA_P-wetherbeei_contig6183.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig6183:380..820- (Phaeothamnion wetherbeei SAG_119_79)
CGCACCATGCGCCAATCCGCCTTCCCCACCCCACAGGACGCCGAGAACGC GTTTTACGACGCGCTGGAGCGCGCCGACCTGGACGCGATGATGGCGGTAT GGGCCGAGGACGAGGAGATCGTCTGCGTGCACCCCACGGGCCCGCGCCTC GCCGGCCACGAACAGGTGCGCGAGAGCTGGAGGCAGATCTTTTCCGGCGG GGGCGGCGTCAGGATCCACGTCACGCAACTGGTCGCCACCCAGGCCATGA TGGTCGCGGTCCACAGCCTGCACGAGAACGCCCCGGCGCCCGAAGGCCAG CGCACCGGGGCCAGCGTCGTCGCGACCAACGTCTACCTGCGTACGGCAGC GGGATGGCGGATGATCGTGCACCACGCCTCGCATGCGCCCGGCCAGCCGC GGGCCGCGCGCGCAGAGGCGCCCCCGAAACTCCTGCACTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6183:380..820-

>mRNA_P-wetherbeei_contig6183.2.1 ID=mRNA_P-wetherbeei_contig6183.2.1|Name=mRNA_P-wetherbeei_contig6183.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=435bp|location=Sequence derived from alignment at P-wetherbeei_contig6183:380..820- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCAATCCGCCTTCCCCACCCCACAGGACGCCGAGAACGCGTTTTA
CGACGCGCTGGAGCGCGCCGACCTGGACGCGATGATGGCGGTATGGGCCG
AGGACGAGGAGATCGTCTGCGTGCACCCCACGGGCCCGCGCCTCGCCGGC
CACGAACAGGTGCGCGAGAGCTGGAGGCAGATCTTTTCCGGCGGGGGCGG
CGTCAGGATCCACGTCACGCAACTGGTCGCCACCCAGGCCATGATGGTCG
CGGTCCACAGCCTGCACGAGAACGCCCCGGCGCCCGAAGGCCAGCGCACC
GGGGCCAGCGTCGTCGCGACCAACGTCTACCTGCGTACGGCAGCGGGATG
GCGGATGATCGTGCACCACGCCTCGCATGCGCCCGGCCAGCCGCGGGCCG
CGCGCGCAGAGGCGCCCCCGAAACTCCTGCACTGA
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