mRNA_P-wetherbeei_contig6159.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6159.2.1
Unique NamemRNA_P-wetherbeei_contig6159.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6159.2.1 vs. uniprot
Match: A0A835YZA2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZA2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 6.250e-27
Identity = 49/66 (74.24%), Postives = 59/66 (89.39%), Query Frame = 1
Query:    1 FDEMGRFVLKNYDRSKPFASFLPALGGEYGIPMWAFYVNRGQGMAAFGLESKEHPLMEFEPANIAY 198
            FDE+GRFVL+ YD +KP++SFLP LGG++G+PMWAFYVNRGQG+AAFG E+KEHPLMEF  AN AY
Sbjct:   91 FDELGRFVLRGYDDAKPWSSFLPGLGGKFGMPMWAFYVNRGQGIAAFGTENKEHPLMEFNSANKAY 156          
BLAST of mRNA_P-wetherbeei_contig6159.2.1 vs. uniprot
Match: A0A3B9JDG1_9CHLR (Uncharacterized protein (Fragment) n=1 Tax=Anaerolineae bacterium TaxID=2052143 RepID=A0A3B9JDG1_9CHLR)

HSP 1 Score: 103 bits (256), Expect = 1.470e-26
Identity = 45/84 (53.57%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 FDEMGRFVLKNYDRSKPFASFLPALGGEYGIPMWAFYVNRGQGMAAFGLESKEHPLMEFEPANIAY------AVRSLISMPRRK 234
            FD +GRF+L ++ +++PF+SFLP + G  GIP+WAFYVNRGQ +A FG+ESK+HP+MEF+PAN AY        R+ I++ R K
Sbjct:   12 FDPLGRFILPDFQQARPFSSFLPGIAGTLGIPLWAFYVNRGQAIAGFGVESKDHPIMEFQPANKAYQQTSALGFRTFINLKRGK 95          
BLAST of mRNA_P-wetherbeei_contig6159.2.1 vs. uniprot
Match: A0A7S3NNE5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNE5_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.020e-25
Identity = 48/70 (68.57%), Postives = 57/70 (81.43%), Query Frame = 1
Query:    1 FDEMGRFVLKNYDRSKPFASFLPALGGEYGIPMWAFYVNRGQGMAAFGLESKEHPLMEFEPANIAYAVRS 210
            FD  GRF+L  YD  KPFASFLP +GGE+G+PMWAFYVNRGQGMAAFG+ +K+ PL+EF PAN AY + S
Sbjct:   83 FDSDGRFILPEYDSRKPFASFLPGIGGEWGMPMWAFYVNRGQGMAAFGVSNKDGPLLEFTPANKAYQIAS 152          
BLAST of mRNA_P-wetherbeei_contig6159.2.1 vs. uniprot
Match: A0A358AH18_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Omnitrophica bacterium TaxID=2035772 RepID=A0A358AH18_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 1.350e-23
Identity = 38/67 (56.72%), Postives = 53/67 (79.10%), Query Frame = 1
Query:   13 GRFVLKNYDRSKPFASFLPALGGEYGIPMWAFYVNRGQGMAAFGLESKEHPLMEFEPANIAYAVRSL 213
            G FV++NY   KPF+SF P + G +G+P+WAFYVNRGQ +A+FG+  K+HP++EF+PAN AY + SL
Sbjct:   11 GEFVIENYHLGKPFSSFFPGIAGVWGVPIWAFYVNRGQAIASFGVRDKDHPILEFQPANKAYQLTSL 77          
BLAST of mRNA_P-wetherbeei_contig6159.2.1 vs. uniprot
Match: A0A2N2MAZ6_9CHLR (Cellobiose phosphorylase n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-6 TaxID=2013729 RepID=A0A2N2MAZ6_9CHLR)

HSP 1 Score: 102 bits (255), Expect = 2.740e-23
Identity = 42/72 (58.33%), Postives = 58/72 (80.56%), Query Frame = 1
Query:    1 FDEMGRFVLKNYDRSKPFASFLPALGGEYGIPMWAFYVNRGQGMAAFGLESKEHPLMEFEPANIAYAVRSLI 216
            FD +GRF+L ++ +++PF+SFLP + G  GIP+WAFYVNRGQ +A FG+ESK+HP+MEF+PAN AY   S +
Sbjct:   15 FDPLGRFILPDFQQARPFSSFLPGIAGTLGIPLWAFYVNRGQAIAGFGVESKDHPIMEFQPANKAYQQTSAL 86          
BLAST of mRNA_P-wetherbeei_contig6159.2.1 vs. uniprot
Match: A0A522WEW2_9BACT (Uncharacterized protein (Fragment) n=1 Tax=bacterium TaxID=1869227 RepID=A0A522WEW2_9BACT)

HSP 1 Score: 99.8 bits (247), Expect = 3.000e-23
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 1
Query:    7 EMGRFVLKNYDRSKPFASFLPALGGEYGIPMWAFYVNRGQGMAAFGLESKEHPLMEFEPANIAYAVRSLISMPRRKCVWLLSNLLKVFFSNFDALP 294
            E G FV++NY  S+PF+SF P + G +G+P+W FYVNRGQ +A FG++ K+HP++EF+PAN AY + SL     R  + + S    VF+  F ++P
Sbjct:   11 EDGEFVIENYHLSRPFSSFFPGIAGLWGVPLWVFYVNRGQAIAGFGIKDKDHPIVEFQPANKAYQLTSLTGF--RTFIKITSQGRPVFYEPFHSIP 104          
BLAST of mRNA_P-wetherbeei_contig6159.2.1 vs. uniprot
Match: UPI001E59F112 (cellobiose phosphorylase n=1 Tax=Pontibacillus sp. HN14 TaxID=2898421 RepID=UPI001E59F112)

HSP 1 Score: 102 bits (254), Expect = 3.740e-23
Identity = 42/66 (63.64%), Postives = 55/66 (83.33%), Query Frame = 1
Query:    1 FDEMGRFVLKNYDRSKPFASFLPALGGEYGIPMWAFYVNRGQGMAAFGLESKEHPLMEFEPANIAY 198
            FDE  RF ++ +DR+KPF+SFLP + G  GIPMWAFYVNRGQG+ +FG++ K+HP+MEF PA+IAY
Sbjct:   15 FDEEDRFEIRQFDRAKPFSSFLPGIAGVDGIPMWAFYVNRGQGICSFGIQDKDHPIMEFSPASIAY 80          
BLAST of mRNA_P-wetherbeei_contig6159.2.1 vs. uniprot
Match: F0XWY2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWY2_AURAN)

HSP 1 Score: 102 bits (253), Expect = 5.080e-23
Identity = 44/64 (68.75%), Postives = 54/64 (84.38%), Query Frame = 1
Query:   19 FVLKNYDRSKPFASFLPALGGEYGIPMWAFYVNRGQGMAAFGLESKEHPLMEFEPANIAYAVRS 210
            F+L ++D  KPFASFLP +GGE+G+PMWAFYVNRGQG+AAFG+E+K+ PLMEF PAN AY   S
Sbjct:    1 FILPDFDTRKPFASFLPGIGGEWGMPMWAFYVNRGQGLAAFGVENKDKPLMEFTPANKAYLTTS 64          
BLAST of mRNA_P-wetherbeei_contig6159.2.1 vs. uniprot
Match: A0A8J8MNE1_9FIRM (Cellobiose phosphorylase n=1 Tax=Vallitalea pronyensis TaxID=1348613 RepID=A0A8J8MNE1_9FIRM)

HSP 1 Score: 102 bits (253), Expect = 5.100e-23
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 1
Query:    1 FDEMGRFVLKNYDRSKPFASFLPALGGEYGIPMWAFYVNRGQGMAAFGLESKEHPLMEFEPANIAY 198
            FD   RF++ NY ++KPF+SFLP + GE GIP+WAFYVNRGQG+++FG+E K HP+MEF PAN AY
Sbjct:    6 FDNKERFIIHNYHKAKPFSSFLPGIAGEKGIPIWAFYVNRGQGISSFGIEDKNHPIMEFFPANSAY 71          
BLAST of mRNA_P-wetherbeei_contig6159.2.1 vs. uniprot
Match: B7FS11_PHATC (Predicted protein n=4 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FS11_PHATC)

HSP 1 Score: 102 bits (253), Expect = 5.140e-23
Identity = 42/72 (58.33%), Postives = 60/72 (83.33%), Query Frame = 1
Query:    1 FDEMGRFVLKNYDRSKPFASFLPALGGEYGIPMWAFYVNRGQGMAAFGLESKEHPLMEFEPANIAYAVRSLI 216
            +DE+GR++L++YD   PF+ FLPAL G +G P++AFY+NRGQG+AAFG+ESKE+P+MEF  AN+AY   +L+
Sbjct:  118 YDELGRYILEDYDAQPPFSDFLPALAGYFGKPLYAFYINRGQGIAAFGVESKEYPIMEFHSANVAYQNTALL 189          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6159.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZA2_9STRA6.250e-2774.24Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A3B9JDG1_9CHLR1.470e-2653.57Uncharacterized protein (Fragment) n=1 Tax=Anaerol... [more]
A0A7S3NNE5_9STRA1.020e-2568.57Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A358AH18_9BACT1.350e-2356.72Uncharacterized protein (Fragment) n=1 Tax=Candida... [more]
A0A2N2MAZ6_9CHLR2.740e-2358.33Cellobiose phosphorylase n=1 Tax=Chloroflexi bacte... [more]
A0A522WEW2_9BACT3.000e-2345.83Uncharacterized protein (Fragment) n=1 Tax=bacteri... [more]
UPI001E59F1123.740e-2363.64cellobiose phosphorylase n=1 Tax=Pontibacillus sp.... [more]
F0XWY2_AURAN5.080e-2368.75Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J8MNE1_9FIRM5.100e-2363.64Cellobiose phosphorylase n=1 Tax=Vallitalea pronye... [more]
B7FS11_PHATC5.140e-2358.33Predicted protein n=4 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6159contigP-wetherbeei_contig6159:2801..3543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009032155.1
Model size315
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue5.43e-24
EggNOG OGs29BC6@1|root,2RIF7@2759|Eukaryota
Cds size306
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186893.056449-UTR-P-wetherbeei_contig6159:2800..28091683186893.056449-UTR-P-wetherbeei_contig6159:2800..2809Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6159 2801..2809 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186893.0683393-CDS-P-wetherbeei_contig6159:2809..28481683186893.0683393-CDS-P-wetherbeei_contig6159:2809..2848Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6159 2810..2848 +
1683186893.0835094-CDS-P-wetherbeei_contig6159:2950..30281683186893.0835094-CDS-P-wetherbeei_contig6159:2950..3028Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6159 2951..3028 +
1683186893.0919142-CDS-P-wetherbeei_contig6159:3354..35431683186893.0919142-CDS-P-wetherbeei_contig6159:3354..3543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6159 3355..3543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6159.2.1prot_P-wetherbeei_contig6159.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6159 2810..3543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6159.2.1

>prot_P-wetherbeei_contig6159.2.1 ID=prot_P-wetherbeei_contig6159.2.1|Name=mRNA_P-wetherbeei_contig6159.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=102bp
MGRFVLKNYDRSKPFASFLPALGGEYGIPMWAFYVNRGQGMAAFGLESKE
HPLMEFEPANIAYAVRSLISMPRRKCVWLLSNLLKVFFSNFDALPKLAMI
G*
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mRNA from alignment at P-wetherbeei_contig6159:2801..3543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6159.2.1 ID=mRNA_P-wetherbeei_contig6159.2.1|Name=mRNA_P-wetherbeei_contig6159.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=743bp|location=Sequence derived from alignment at P-wetherbeei_contig6159:2801..3543+ (Phaeothamnion wetherbeei SAG_119_79)
TTTGACGAGATGGGCCGCTTCGTGCTCAAGAACTACGACCGCTCAAAGGT AAGGCGTTGCCGCTCGCATATCAATGATCAGGAACCCCTTCTAAACCTCA ATTTTCTTTGTCTGCCGTTCTTATTTCGTTGCCGCCGCCGCCGATCGCAG CCTTTCGCCAGCTTCTTGCCGGCGCTTGGCGGCGAGTACGGCATCCCCAT GTGGGCGTTTTACGTCAACCGCGGCCAGGTGAGAGAACAATGTTTGTGAT GCAGGTGAGAATGCGTCGATTTGACGACATTTTCGAGCAAGGTTGCTGTG CGGCTTTGCCATTCCGACGCAGACTGCTGTTAAGTGCTGGAATGCTGTCG ATCTCACGCAGTTCCAGTAGACGCTTTTTGATGTGGCCTTGCATTTAGAT GCTTAATGTTGAGGAAGAGGAAGAGAGTTACGCCATGGTCGTAATCCGGG CTTGTCTGCGATATTGTGCTGTTCCATTCTTGCGTCTCGGCCCCCGTGAC ACTGACGCTATCGGCGGTGTTGCATTGGTTACCCACATTTTGCGTTACGC ACAGGGCATGGCCGCATTCGGCCTGGAGAGCAAGGAGCACCCGCTCATGG AATTCGAGCCCGCCAACATCGCATACGCAGTACGTTCACTTATTTCGATG CCTCGCAGAAAGTGTGTTTGGCTTCTTTCCAACCTCCTAAAAGTTTTCTT CTCTAATTTCGATGCTTTGCCGAAGCTTGCGATGATCGGATGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6159:2801..3543+

>mRNA_P-wetherbeei_contig6159.2.1 ID=mRNA_P-wetherbeei_contig6159.2.1|Name=mRNA_P-wetherbeei_contig6159.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=306bp|location=Sequence derived from alignment at P-wetherbeei_contig6159:2801..3543+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGCCGCTTCGTGCTCAAGAACTACGACCGCTCAAAGCCTTTCGCCAG
CTTCTTGCCGGCGCTTGGCGGCGAGTACGGCATCCCCATGTGGGCGTTTT
ACGTCAACCGCGGCCAGGGCATGGCCGCATTCGGCCTGGAGAGCAAGGAG
CACCCGCTCATGGAATTCGAGCCCGCCAACATCGCATACGCAGTACGTTC
ACTTATTTCGATGCCTCGCAGAAAGTGTGTTTGGCTTCTTTCCAACCTCC
TAAAAGTTTTCTTCTCTAATTTCGATGCTTTGCCGAAGCTTGCGATGATC
GGATGA
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