mRNA_P-wetherbeei_contig6156.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6156.1.1
Unique NamemRNA_P-wetherbeei_contig6156.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6156.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6156contigP-wetherbeei_contig6156:2177..3543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size761
Hectar predicted targeting categoryother localisation
Exons2
Cds size717
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.9332278-UTR-P-wetherbeei_contig6156:2176..22181683186892.9332278-UTR-P-wetherbeei_contig6156:2176..2218Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6156 2177..2218 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.9420242-CDS-P-wetherbeei_contig6156:2218..28411683186892.9420242-CDS-P-wetherbeei_contig6156:2218..2841Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6156 2219..2841 +
1683186892.9502523-CDS-P-wetherbeei_contig6156:3449..35431683186892.9502523-CDS-P-wetherbeei_contig6156:3449..3543Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6156 3450..3543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6156.1.1prot_P-wetherbeei_contig6156.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6156 2219..3543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6156.1.1

>prot_P-wetherbeei_contig6156.1.1 ID=prot_P-wetherbeei_contig6156.1.1|Name=mRNA_P-wetherbeei_contig6156.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=239bp
MKSISKAVFGGAGQSTSSRGKGAAPPVHSRSESQQRFGREGSIQAGLPAS
PSVHRSKATPHGLGGFSDSQNGGRRRSEAGTSPNAGITDEDWVGAALDHL
NKEAVPAARALRGMRTLEQPVKIAVAARLAASVEADTFSRGRATVHALVV
AVEQHRRPQGGTGTVATIYDMSIGQTTAGGPGRSAAGTGMEGPRPMQVMV
RRSWTLDRLSSVERPEMESASFSLVFVSSGGAVMSPPAA
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mRNA from alignment at P-wetherbeei_contig6156:2177..3543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6156.1.1 ID=mRNA_P-wetherbeei_contig6156.1.1|Name=mRNA_P-wetherbeei_contig6156.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1367bp|location=Sequence derived from alignment at P-wetherbeei_contig6156:2177..3543+ (Phaeothamnion wetherbeei SAG_119_79)
ATCTGGAGCTCTCATTGCGAGGCGTTGTGACGTGCATACCTGATGAAATC
CATCTCGAAGGCAGTCTTCGGAGGGGCTGGGCAGTCCACTTCCTCGAGAG
GGAAAGGGGCAGCTCCGCCTGTGCATTCTCGGAGCGAAAGTCAGCAGCGC
TTTGGCCGCGAGGGAAGCATTCAAGCAGGGTTGCCGGCTTCCCCGTCAGT
GCATCGCAGCAAGGCAACTCCGCACGGCCTAGGCGGGTTCAGCGACTCGC
AGAACGGTGGGCGAAGACGTTCGGAAGCCGGTACCTCTCCCAACGCGGGG
ATCACCGATGAAGACTGGGTGGGCGCCGCGTTGGATCACCTCAACAAGGA
GGCGGTGCCCGCCGCGCGGGCGCTGAGAGGAATGCGCACCTTGGAGCAGC
CCGTGAAGATTGCCGTCGCCGCGAGGCTGGCCGCCTCCGTCGAGGCCGAC
ACCTTTTCGCGGGGACGGGCGACGGTCCACGCGCTCGTCGTGGCAGTGGA
GCAGCACCGCAGGCCGCAGGGCGGCACCGGCACCGTCGCCACCATATACG
ACATGTCGATAGGCCAGACGACGGCGGGCGGGCCGGGACGGTCCGCCGCC
GGCACGGGGATGGAGGGGCCGCGGCCCATGCAAGTCATGGTGCGGCGGTC
GTGGACGCTAGACAGGTGAGAGAAACGAGGACAAGCAATTACGTAGAAAC
GGAGACAAAATGGCAGTTTGTAGCTCGATTGAGACAGACCAACCTCTTCT
GAAGGATACCCGTAACGCAATTTTTGTAGCTATATAAGCGTTAAATTTGT
TGAGATACAATAGTCCTTTTGTATTTCGCACGTAACAACGCACGTTTCTC
GTGATAGCCTACCTGCGTGGTGAACACCCCACGTGACGGACGGGAAGAGT
GCTGATTTTGAAAGACCTAAGGGTTTGAATAAAAGACAAGCGGTTTCGCG
GCATATATTCGGCCATAAGTACCGTCGAAAGTTTGCCGTCAAGTGCGTCT
GGGATTTGGCGCTTTGGTTCCCTGACACGGAAGGTAGAAACTTACCCTTA
GTATGGAGGAATTTGGCAAAAGTCGGTTCGTTTGCTATCGAATTAGGACT
GCTGCGCGTGCCTAATTCTATGAGCGAGCTTAGTCACGTAAAACTGCTCC
AGAATGTGGTTGCCTCGCTCCCGTCGGCAATGTAACTCCGCATCGTTGTG
TTTCTGCTCTTTTGTGTTTTCCCCTTTTCTCCTTCTCCGATCTGGAATCT
TTTCCCGGCGTATCCCCATGCAGGCTATCGAGCGTTGAGCGGCCAGAAAT
GGAGAGCGCCTCATTCAGCCTCGTCTTTGTCTCGTCCGGTGGCGCCGTCA
TGTCGCCGCCCGCCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6156:2177..3543+

>mRNA_P-wetherbeei_contig6156.1.1 ID=mRNA_P-wetherbeei_contig6156.1.1|Name=mRNA_P-wetherbeei_contig6156.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=717bp|location=Sequence derived from alignment at P-wetherbeei_contig6156:2177..3543+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAATCCATCTCGAAGGCAGTCTTCGGAGGGGCTGGGCAGTCCACTTC
CTCGAGAGGGAAAGGGGCAGCTCCGCCTGTGCATTCTCGGAGCGAAAGTC
AGCAGCGCTTTGGCCGCGAGGGAAGCATTCAAGCAGGGTTGCCGGCTTCC
CCGTCAGTGCATCGCAGCAAGGCAACTCCGCACGGCCTAGGCGGGTTCAG
CGACTCGCAGAACGGTGGGCGAAGACGTTCGGAAGCCGGTACCTCTCCCA
ACGCGGGGATCACCGATGAAGACTGGGTGGGCGCCGCGTTGGATCACCTC
AACAAGGAGGCGGTGCCCGCCGCGCGGGCGCTGAGAGGAATGCGCACCTT
GGAGCAGCCCGTGAAGATTGCCGTCGCCGCGAGGCTGGCCGCCTCCGTCG
AGGCCGACACCTTTTCGCGGGGACGGGCGACGGTCCACGCGCTCGTCGTG
GCAGTGGAGCAGCACCGCAGGCCGCAGGGCGGCACCGGCACCGTCGCCAC
CATATACGACATGTCGATAGGCCAGACGACGGCGGGCGGGCCGGGACGGT
CCGCCGCCGGCACGGGGATGGAGGGGCCGCGGCCCATGCAAGTCATGGTG
CGGCGGTCGTGGACGCTAGACAGGCTATCGAGCGTTGAGCGGCCAGAAAT
GGAGAGCGCCTCATTCAGCCTCGTCTTTGTCTCGTCCGGTGGCGCCGTCA
TGTCGCCGCCCGCCGCC
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