mRNA_P-wetherbeei_contig6154.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6154.1.1
Unique NamemRNA_P-wetherbeei_contig6154.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6154.1.1 vs. uniprot
Match: A0A7S3Y439_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y439_HETAK)

HSP 1 Score: 82.0 bits (201), Expect = 5.670e-19
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 DEIFDMVKPADFAEITFADLVRSGVGHTVVSMLIDINGFWAYDNRESIMYE 153
            DEIFDMVKP    +IT+ DL+ S VGHT+VSMLID+NGFWAYDNRES+ Y+
Sbjct:   41 DEIFDMVKPKTPWQITYDDLINSNVGHTIVSMLIDVNGFWAYDNRESLSYD 91
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BLAST of mRNA_P-wetherbeei_contig6154.1.1 vs. uniprot
Match: D7FPD4_ECTSI (Protein phosphatase 2A regulatory subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPD4_ECTSI)

HSP 1 Score: 82.0 bits (201), Expect = 5.810e-17
Identity = 38/48 (79.17%), Postives = 41/48 (85.42%), Query Frame = 1 
Query:    1 DEIFDMVKPADFAEITFADLVRSGVGHTVVSMLIDINGFWAYDNRESI 144
            DEIFDMVKPAD   IT ADL+ SG GHTVVSML+D NGFWAYDNRES+
Sbjct:  696 DEIFDMVKPADPTFITLADLLASGAGHTVVSMLVDTNGFWAYDNRESL 743
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BLAST of mRNA_P-wetherbeei_contig6154.1.1 vs. uniprot
Match: A0A6H5KJ60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ60_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.160e-16
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 DEIFDMVKPADFAEITFADLVRSGVGHTVVSMLIDINGFWAYDNRESI 144
            DEIFDMVKPAD   IT ADL+ SG GHTVV+ML+D NGFW YDNRES+
Sbjct:  682 DEIFDMVKPADPTFITLADLLASGAGHTVVTMLVDTNGFWTYDNRESL 729
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BLAST of mRNA_P-wetherbeei_contig6154.1.1 vs. uniprot
Match: A0A0G4IZP9_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IZP9_PLABS)

HSP 1 Score: 77.8 bits (190), Expect = 1.700e-15
Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 1 
Query:    4 EIFDMVKPADFAEITFADLVRSGVGHTVVSMLIDINGFWAYDNRESIMYE 153
            E+FDMV P+D   I + DL+RSGVGHTVVS+LID+NGFWAYDNRES+  E
Sbjct:  400 EVFDMVGPSDPERIFYDDLLRSGVGHTVVSILIDVNGFWAYDNRESLNQE 449
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BLAST of mRNA_P-wetherbeei_contig6154.1.1 vs. uniprot
Match: A0A2L2YPI1_PARTP (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma (Fragment) n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=A0A2L2YPI1_PARTP)

HSP 1 Score: 72.8 bits (177), Expect = 5.000e-15
Identity = 32/51 (62.75%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 DEIFDMVKPADFAEITFADLVRSGVGHTVVSMLIDINGFWAYDNRESIMYE 153
            DEIFDM+KPAD  ++T  DL+ SG G TVVS+LID+NGFW Y+NRE ++ E
Sbjct:   86 DEIFDMIKPADPLKVTLQDLILSGQGDTVVSILIDLNGFWTYENREVLVAE 136
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BLAST of mRNA_P-wetherbeei_contig6154.1.1 vs. uniprot
Match: A0A1B6EJK3_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Cuerna arida TaxID=1464854 RepID=A0A1B6EJK3_9HEMI)

HSP 1 Score: 70.9 bits (172), Expect = 1.610e-14
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 DEIFDMVKPADFAEITFADLVRSGVGHTVVSMLIDINGFWAYDNRESIMYE 153
            DE+FDM+KP D  +IT  DL+ SG G T+VS+LID+NGFW Y+NRE+++ E
Sbjct:   61 DEMFDMIKPVDPTKITLQDLLNSGQGETLVSILIDLNGFWTYENREAMVAE 111
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BLAST of mRNA_P-wetherbeei_contig6154.1.1 vs. uniprot
Match: A0A1B6HTW8_9HEMI (Uncharacterized protein n=3 Tax=Homalodisca TaxID=139475 RepID=A0A1B6HTW8_9HEMI)

HSP 1 Score: 70.9 bits (172), Expect = 1.910e-14
Identity = 30/51 (58.82%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:    1 DEIFDMVKPADFAEITFADLVRSGVGHTVVSMLIDINGFWAYDNRESIMYE 153
            DE+FDM+KP D  +IT  DL+ SG G T+VS+LID+NGFW Y+NRE+++ E
Sbjct:   68 DEMFDMIKPVDPTKITLQDLLNSGQGETLVSILIDLNGFWTYENREAMVAE 118
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BLAST of mRNA_P-wetherbeei_contig6154.1.1 vs. uniprot
Match: A0A2R5GJ48_9STRA (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ48_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.980e-14
Identity = 33/51 (64.71%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 DEIFDMVKPADFAEITFADLVRSGVGHTVVSMLIDINGFWAYDNRESIMYE 153
            DEIFDM  P D   IT ADLVRSG+G T+V+ML D++GFWAYDNRE ++ E
Sbjct: 1322 DEIFDMCNPRDPCRITLADLVRSGIGDTIVTMLTDLSGFWAYDNREHLIAE 1372
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BLAST of mRNA_P-wetherbeei_contig6154.1.1 vs. uniprot
Match: A0A8B7XKQ1_ACAPL (Serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma n=4 Tax=Asteroidea TaxID=7588 RepID=A0A8B7XKQ1_ACAPL)

HSP 1 Score: 73.6 bits (179), Expect = 5.420e-14
Identity = 34/51 (66.67%), Postives = 40/51 (78.43%), Query Frame = 1 
Query:    1 DEIFDMVKPADFAEITFADLVRSGVGHTVVSMLIDINGFWAYDNRESIMYE 153
            DEIFDMVKPAD  +IT  DL+ S  G TVVS+LID+NGFW Y+NRE +M E
Sbjct:  393 DEIFDMVKPADPLKITLQDLINSNHGETVVSILIDLNGFWTYENREVLMAE 443
[Close]
BLAST of mRNA_P-wetherbeei_contig6154.1.1 vs. uniprot
Match: A0A1S3JY28_LINUN (serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit gamma isoform X1 n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3JY28_LINUN)

HSP 1 Score: 73.2 bits (178), Expect = 7.340e-14
Identity = 33/49 (67.35%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:    1 DEIFDMVKPADFAEITFADLVRSGVGHTVVSMLIDINGFWAYDNRESIM 147
            DEIFDMVKPAD  +IT  DL+ SG G TVVS+LID+NGFW Y+NRE ++
Sbjct:  389 DEIFDMVKPADPLKITLQDLINSGQGDTVVSILIDLNGFWTYENREVLV 437
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6154.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3Y439_HETAK5.670e-1970.59Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D7FPD4_ECTSI5.810e-1779.17Protein phosphatase 2A regulatory subunit n=1 Tax=... [more]
A0A6H5KJ60_9PHAE5.160e-1675.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4IZP9_PLABS1.700e-1570.00Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]
A0A2L2YPI1_PARTP5.000e-1562.75Serine/threonine-protein phosphatase 2A regulatory... [more]
A0A1B6EJK3_9HEMI1.610e-1458.82Uncharacterized protein (Fragment) n=1 Tax=Cuerna ... [more]
A0A1B6HTW8_9HEMI1.910e-1458.82Uncharacterized protein n=3 Tax=Homalodisca TaxID=... [more]
A0A2R5GJ48_9STRA2.980e-1464.71Serine/threonine-protein phosphatase 2A regulatory... [more]
A0A8B7XKQ1_ACAPL5.420e-1466.67Serine/threonine-protein phosphatase 2A regulatory... [more]
A0A1S3JY28_LINUN7.340e-1467.35serine/threonine-protein phosphatase 2A regulatory... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6154contigP-wetherbeei_contig6154:93..245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FPD4
Preferred namePPP2R3C
PFAMsEF-hand_7
Model size153
Max annot lvl2759|Eukaryota
KEGG koko:K11583
KEGG Pathwayko03015,ko04071,ko04151,ko04152,ko04261,ko04728,ko05165,map03015,map04071,map04151,map04152,map04261,map04728,map05165
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000902,GO:0000910,GO:0000911,GO:0000913,GO:0001776,GO:0001782,GO:0001932,GO:0001934,GO:0002260,GO:0002376,GO:0002520,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002759,GO:0002831,GO:0002920,GO:0003254,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005794,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007275,GO:0008104,GO:0008150,GO:0009524,GO:0009653,GO:0009790,GO:0009792,GO:0009826,GO:0009893,GO:0009987,GO:0010562,GO:0010604,GO:0012505,GO:0015630,GO:0016043,GO:0016049,GO:0019220,GO:0019222,GO:0019899,GO:0019902,GO:0019903,GO:0022402,GO:0022607,GO:0030865,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0032101,GO:0032147,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032506,GO:0032989,GO:0033036,GO:0033365,GO:0033674,GO:0034613,GO:0040007,GO:0042325,GO:0042327,GO:0042391,GO:0042592,GO:0043029,GO:0043085,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043549,GO:0043900,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0045577,GO:0045579,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045859,GO:0045860,GO:0045937,GO:0048285,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048536,GO:0048583,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050776,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0051094,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051249,GO:0051251,GO:0051301,GO:0051338,GO:0051347,GO:0051641,GO:0051721,GO:0051881,GO:0051900,GO:0060255,GO:0060560,GO:0061640,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070925,GO:0071840,GO:0080090,GO:0090307,GO:0140014,GO:1902105,GO:1902107,GO:1902410,GO:1902850,GO:1903047,GO:1903706,GO:1903708,GO:2000026
Exons1
Evalue2.54e-14
EggNOG OGsKOG2562@1|root,KOG2562@2759|Eukaryota
Descriptionpositive regulation of B cell differentiation
Cds size138
COG categoryL
BRITEko00000,ko00001,ko01009,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.8131247-UTR-P-wetherbeei_contig6154:92..1071683186892.8131247-UTR-P-wetherbeei_contig6154:92..107Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6154 93..107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.8235633-CDS-P-wetherbeei_contig6154:107..2451683186892.8235633-CDS-P-wetherbeei_contig6154:107..245Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6154 108..245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6154.1.1prot_P-wetherbeei_contig6154.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6154 108..245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6154.1.1

>prot_P-wetherbeei_contig6154.1.1 ID=prot_P-wetherbeei_contig6154.1.1|Name=mRNA_P-wetherbeei_contig6154.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=46bp
MVKPADFAEITFADLVRSGVGHTVVSMLIDINGFWAYDNRESIMYE
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mRNA from alignment at P-wetherbeei_contig6154:93..245+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6154.1.1 ID=mRNA_P-wetherbeei_contig6154.1.1|Name=mRNA_P-wetherbeei_contig6154.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig6154:93..245+ (Phaeothamnion wetherbeei SAG_119_79)
GACGAGATCTTTGACATGGTGAAGCCGGCGGACTTCGCGGAGATCACTTT
CGCGGACCTGGTGCGGAGCGGCGTTGGCCACACCGTGGTGAGCATGCTCA
TCGACATCAACGGCTTCTGGGCCTACGACAACCGGGAGAGCATCATGTAC
GAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6154:93..245+

>mRNA_P-wetherbeei_contig6154.1.1 ID=mRNA_P-wetherbeei_contig6154.1.1|Name=mRNA_P-wetherbeei_contig6154.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=138bp|location=Sequence derived from alignment at P-wetherbeei_contig6154:93..245+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGAAGCCGGCGGACTTCGCGGAGATCACTTTCGCGGACCTGGTGCG
GAGCGGCGTTGGCCACACCGTGGTGAGCATGCTCATCGACATCAACGGCT
TCTGGGCCTACGACAACCGGGAGAGCATCATGTACGAG
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