mRNA_P-wetherbeei_contig6147.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6147.2.1
Unique NamemRNA_P-wetherbeei_contig6147.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6147.2.1 vs. uniprot
Match: A0A836CJW3_9STRA (J domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJW3_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.290e-5
Identity = 29/61 (47.54%), Postives = 32/61 (52.46%), Query Frame = 1 
Query:  406 MPAQLQVELCHGESSIGVADCMQAFGPRPFPDA------EKVRICKGGAGTAPATCFNAMP 570
            MPA LQVELC GE S  V DC+ AF       A       +V  CKGG    PA C+ AMP
Sbjct:    1 MPAALQVELCRGEHSAAVVDCVHAFQESGGAAAGGATSKAQVETCKGGNSIIPAECYRAMP 61
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6147.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CJW3_9STRA7.290e-547.54J domain-containing protein n=1 Tax=Tribonema minu... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6147contigP-wetherbeei_contig6147:1655..2556 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size664
Hectar predicted targeting categorymitochondrion
Exons2
Cds size663
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186892.1654737-CDS-P-wetherbeei_contig6147:1654..21071683186892.1654737-CDS-P-wetherbeei_contig6147:1654..2107Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6147 1655..2107 +
1683186892.1781623-CDS-P-wetherbeei_contig6147:2346..25561683186892.1781623-CDS-P-wetherbeei_contig6147:2346..2556Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6147 2347..2556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6147.2.1prot_P-wetherbeei_contig6147.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6147 1655..2556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6147.2.1

>prot_P-wetherbeei_contig6147.2.1 ID=prot_P-wetherbeei_contig6147.2.1|Name=mRNA_P-wetherbeei_contig6147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=221bp
VKVHFLLSLPFRSRQTPRCNGSEGEKRMVGTARRRCHRRGLLCVVCAAVL
SQRPAEASRARLSLECERRAPRGLAPSERADLCHNATNASPAECATAAHK
LPSLSNDLVVHLCRDAESPFPVACVKALGRKVGKSMPAQLQVELCHGESS
IGVADCMQAFGPRPFPDAEKVRICKGGAGTAPATCFNAMPRGFPKTSAVA
VCSAAASAAPGECVARAAAAL
back to top

mRNA from alignment at P-wetherbeei_contig6147:1655..2556+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6147.2.1 ID=mRNA_P-wetherbeei_contig6147.2.1|Name=mRNA_P-wetherbeei_contig6147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=902bp|location=Sequence derived from alignment at P-wetherbeei_contig6147:1655..2556+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAAGGTCCACTTTCTTCTCTCTCTCCCCTTTCGTTCCCGCCAAACTCC
GAGGTGTAACGGCTCAGAAGGAGAAAAGAGAATGGTGGGAACAGCAAGGA
GAAGATGCCACAGGCGTGGCCTGCTGTGCGTGGTCTGCGCGGCCGTGCTG
TCACAGCGACCAGCCGAGGCTTCGAGAGCTCGGCTGTCTCTAGAATGCGA
ACGCCGCGCTCCACGCGGCCTGGCACCGTCGGAGCGCGCTGATCTGTGCC
ATAATGCCACGAATGCGTCGCCGGCCGAGTGCGCGACCGCGGCTCACAAG
CTGCCATCATTATCGAACGATCTTGTCGTCCATCTGTGCCGAGACGCCGA
GTCACCTTTCCCAGTTGCGTGTGTCAAGGCATTGGGACGAAAAGTCGGGA
AGAGCATGCCGGCGCAATTGCAAGTGGAGCTGTGTCATGGCGAAAGCTCC
ATCGTACGTTTTTGTTGGGGAGGAAAGTTTTTTAGCATTTTGTTTGCCCT
TCATTGGATGTATTGACTAATCATTTTTATTCAATCACGATCTATGTTCT
GAGTTTTCGCTGCTAACGCTTATGGGGCGGGCGAGAAACCTCCGTTCTGT
TCTGAACTCCTGACAAGCGCACTTCGAATGGAGATGGATGAGATCAACGA
CACGTGCCTTTCCCTCCTTCCAAATTATTTTCGTCTTCGCAGGGCGTCGC
CGACTGCATGCAGGCGTTTGGCCCCCGCCCGTTTCCGGATGCGGAGAAGG
TCCGTATCTGTAAAGGTGGCGCCGGAACAGCGCCGGCGACTTGCTTCAAT
GCCATGCCCCGTGGCTTTCCCAAAACGTCAGCCGTCGCCGTATGCAGCGC
CGCCGCCTCCGCCGCACCGGGCGAGTGCGTCGCCCGCGCTGCAGCCGCAC
TG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6147:1655..2556+

>mRNA_P-wetherbeei_contig6147.2.1 ID=mRNA_P-wetherbeei_contig6147.2.1|Name=mRNA_P-wetherbeei_contig6147.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=663bp|location=Sequence derived from alignment at P-wetherbeei_contig6147:1655..2556+ (Phaeothamnion wetherbeei SAG_119_79)
GTCAAGGTCCACTTTCTTCTCTCTCTCCCCTTTCGTTCCCGCCAAACTCC
GAGGTGTAACGGCTCAGAAGGAGAAAAGAGAATGGTGGGAACAGCAAGGA
GAAGATGCCACAGGCGTGGCCTGCTGTGCGTGGTCTGCGCGGCCGTGCTG
TCACAGCGACCAGCCGAGGCTTCGAGAGCTCGGCTGTCTCTAGAATGCGA
ACGCCGCGCTCCACGCGGCCTGGCACCGTCGGAGCGCGCTGATCTGTGCC
ATAATGCCACGAATGCGTCGCCGGCCGAGTGCGCGACCGCGGCTCACAAG
CTGCCATCATTATCGAACGATCTTGTCGTCCATCTGTGCCGAGACGCCGA
GTCACCTTTCCCAGTTGCGTGTGTCAAGGCATTGGGACGAAAAGTCGGGA
AGAGCATGCCGGCGCAATTGCAAGTGGAGCTGTGTCATGGCGAAAGCTCC
ATCGGCGTCGCCGACTGCATGCAGGCGTTTGGCCCCCGCCCGTTTCCGGA
TGCGGAGAAGGTCCGTATCTGTAAAGGTGGCGCCGGAACAGCGCCGGCGA
CTTGCTTCAATGCCATGCCCCGTGGCTTTCCCAAAACGTCAGCCGTCGCC
GTATGCAGCGCCGCCGCCTCCGCCGCACCGGGCGAGTGCGTCGCCCGCGC
TGCAGCCGCACTG
back to top