mRNA_P-wetherbeei_contig6142.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6142.2.1
Unique NamemRNA_P-wetherbeei_contig6142.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6142.2.1 vs. uniprot
Match: A0A835Z3Y7_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3Y7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.090e-10
Identity = 29/41 (70.73%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:  106 PHLVVVPSSVLSNWEAELRRFCPKLRVAVYHGSVANRARVR 228
            PHL+VVPSSVL+NW++EL RFCP L VA+YHGS A RA +R
Sbjct:  597 PHLIVVPSSVLANWQSELERFCPALEVAIYHGSQAERADMR 637
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BLAST of mRNA_P-wetherbeei_contig6142.2.1 vs. uniprot
Match: W4GVJ4_9STRA (Uncharacterized protein n=13 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GVJ4_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.290e-9
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  106 PHLVVVPSSVLSNWEAELRRFCPKLRVAVYHGSVANRARVREELLP 243
            PHLV+VPSSVLSNW+ E+ RF P LRV  +HGS++ R  + +EL P
Sbjct:  440 PHLVIVPSSVLSNWKREIGRFAPSLRVRTFHGSISERQEIMDELQP 485
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BLAST of mRNA_P-wetherbeei_contig6142.2.1 vs. uniprot
Match: A0A397FBG6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FBG6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 2.380e-9
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  106 PHLVVVPSSVLSNWEAELRRFCPKLRVAVYHGSVANRARVREELLP 243
            PHLV+VPSSVLSNW+ E+ RF P LRV  +HGS++ R  + +EL P
Sbjct:  242 PHLVIVPSSVLSNWKREIGRFAPSLRVRTFHGSISERQELMDELQP 287
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BLAST of mRNA_P-wetherbeei_contig6142.2.1 vs. uniprot
Match: A0A3R7AFR6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7AFR6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.300e-9
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1 
Query:  106 PHLVVVPSSVLSNWEAELRRFCPKLRVAVYHGSVANRARVREELLP 243
            PHLV+VPSSVLSNW+ E+ RF P LRV  +HGS++ R  + +EL P
Sbjct:   23 PHLVIVPSSVLSNWKREIGRFAPSLRVRTFHGSISERQDLMDELQP 68
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BLAST of mRNA_P-wetherbeei_contig6142.2.1 vs. uniprot
Match: A0A024UXM7_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UXM7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.130e-9
Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:  106 PHLVVVPSSVLSNWEAELRRFCPKLRVAVYHGSVANRARVREELLP 243
            PHLV+VPSSVLSNW+ E+ RF P LRV  +HGS+  R  + +EL P
Sbjct:  435 PHLVIVPSSVLSNWKREIERFAPTLRVRTFHGSIDERNLIMDELQP 480
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BLAST of mRNA_P-wetherbeei_contig6142.2.1 vs. uniprot
Match: A0A8J9RD79_9CHLO (Probable SWI/SNF-related matrix-associated actin-dependent regulator n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RD79_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 8.330e-9
Identity = 32/72 (44.44%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:  106 PHLVVVPSSVLSNWEAELRRFCPKLRVAVYHGSVANRARVREELLPIIKRRRGHDNGSXXXXXXXXXAEDSE 321
            PH++VVP+S+L NW+ EL+R+CP L+V +Y+G   +RA++REELL     RRG +  +          EDSE
Sbjct:  278 PHIIVVPASLLENWQRELQRWCPSLKVVLYYGK--DRAQLREELLEY---RRGQEQDTSEASGSAGEQEDSE 344
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BLAST of mRNA_P-wetherbeei_contig6142.2.1 vs. uniprot
Match: A0A4P9Y5E9_9FUNG (SNF2 family N-terminal domain-containing protein (Fragment) n=1 Tax=Piptocephalis cylindrospora TaxID=1907219 RepID=A0A4P9Y5E9_9FUNG)

HSP 1 Score: 60.8 bits (146), Expect = 1.490e-8
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:  106 PHLVVVPSSVLSNWEAELRRFCPKLRVAVYHGSVANRARVREEL 237
            PHL+VVP+S + NWE E  +FCP L V VYHGS   RA +R+ L
Sbjct:   55 PHLIVVPTSTVGNWEREFTKFCPSLSVLVYHGSQGERAEIRDHL 98
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BLAST of mRNA_P-wetherbeei_contig6142.2.1 vs. uniprot
Match: A0A8H7W3H7_9FUNG (Uncharacterized protein n=1 Tax=Thamnidium elegans TaxID=101142 RepID=A0A8H7W3H7_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 2.910e-8
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:  106 PHLVVVPSSVLSNWEAELRRFCPKLRVAVYHGSVANRARVREELL 240
            PHLV+VPSS + NW  E  RFCPKL V +YHGS+  R   R EL+
Sbjct:  444 PHLVIVPSSTIENWLREFERFCPKLTVRLYHGSIKERDEQRYELI 488
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BLAST of mRNA_P-wetherbeei_contig6142.2.1 vs. uniprot
Match: UPI000BA7F734 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 homolog n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI000BA7F734)

HSP 1 Score: 56.6 bits (135), Expect = 3.440e-8
Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1 
Query:  106 PHLVVVPSSVLSNWEAELRRFCPKLRVAVYHGSVANRARVREELL 240
            PHL+VVPSS L NW+ ELR +CP L V  YHGS   R  +R  +L
Sbjct:   46 PHLIVVPSSTLDNWQRELRSWCPSLTVRCYHGSQDERKELRVRIL 90
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BLAST of mRNA_P-wetherbeei_contig6142.2.1 vs. uniprot
Match: I2CQL4_NANGC (SNF2-rel_dom domain-containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQL4_NANGC)

HSP 1 Score: 55.5 bits (132), Expect = 4.570e-8
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:  106 PHLVVVPSSVLSNWEAELRRFCPKLRVAVYHGSVANRARVRE 231
            PHLVVVP+S L NWE E +RFCP L++  Y+GS   R ++R+
Sbjct:   24 PHLVVVPTSCLVNWETEFKRFCPALKILPYYGSAPARKQLRQ 65
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6142.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z3Y7_9STRA1.090e-1070.73SNF2 family N-terminal domain-containing protein n... [more]
W4GVJ4_9STRA1.290e-958.70Uncharacterized protein n=13 Tax=Aphanomyces astac... [more]
A0A397FBG6_9STRA2.380e-958.70Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A3R7AFR6_9STRA4.300e-958.70Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A024UXM7_9STRA6.130e-958.70Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A8J9RD79_9CHLO8.330e-944.44Probable SWI/SNF-related matrix-associated actin-d... [more]
A0A4P9Y5E9_9FUNG1.490e-856.82SNF2 family N-terminal domain-containing protein (... [more]
A0A8H7W3H7_9FUNG2.910e-857.78Uncharacterized protein n=1 Tax=Thamnidium elegans... [more]
UPI000BA7F7343.440e-855.56SWI/SNF-related matrix-associated actin-dependent ... [more]
I2CQL4_NANGC4.570e-854.76SNF2-rel_dom domain-containing protein (Fragment) ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6142contigP-wetherbeei_contig6142:3201..3521 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1392244.V5ETA7
Preferred nameFUN30
PFAMsHelicase_C,SNF2_N
Model size322
Max annot lvl4751|Fungi
KEGG koko:K14439
KEGG Pathwayko04550,map04550
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000166,GO:0000183,GO:0000228,GO:0000729,GO:0000775,GO:0000785,GO:0000790,GO:0000792,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006342,GO:0006348,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010647,GO:0016043,GO:0016458,GO:0016462,GO:0016584,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022607,GO:0023051,GO:0023056,GO:0030466,GO:0030554,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031497,GO:0031507,GO:0031934,GO:0031974,GO:0031981,GO:0032015,GO:0032017,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0033554,GO:0034401,GO:0034641,GO:0034724,GO:0034728,GO:0035639,GO:0036094,GO:0040029,GO:0042623,GO:0042766,GO:0043044,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0043954,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0046578,GO:0046579,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051056,GO:0051057,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051276,GO:0051716,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070827,GO:0070828,GO:0070829,GO:0070868,GO:0070869,GO:0070870,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097367,GO:0097549,GO:0098687,GO:0140097,GO:1901265,GO:1901360,GO:1901363,GO:1902531,GO:1902533,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
Exons1
Evalue1.01e-09
EggNOG OGsKOG0389@1|root,KOG0389@2759|Eukaryota,38DZ4@33154|Opisthokonta,3NVEK@4751|Fungi,3UYS9@5204|Basidiomycota
EC3.6.4.12
DescriptionSNF2 family N-terminal domain
Cds size321
COG categoryA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186891.910754-CDS-P-wetherbeei_contig6142:3200..35211683186891.910754-CDS-P-wetherbeei_contig6142:3200..3521Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6142 3201..3521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6142.2.1prot_P-wetherbeei_contig6142.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6142 3201..3521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6142.2.1

>prot_P-wetherbeei_contig6142.2.1 ID=prot_P-wetherbeei_contig6142.2.1|Name=mRNA_P-wetherbeei_contig6142.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=107bp
TAEAAKAAEAADSAHTESAAATAALTEDEAEAPHLPHLVVVPSSVLSNWE
AELRRFCPKLRVAVYHGSVANRARVREELLPIIKRRRGHDNGSGRGRGGG
GGAEDSE
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mRNA from alignment at P-wetherbeei_contig6142:3201..3521+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6142.2.1 ID=mRNA_P-wetherbeei_contig6142.2.1|Name=mRNA_P-wetherbeei_contig6142.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig6142:3201..3521+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGCCGAAGCGGCCAAGGCGGCCGAAGCTGCCGACTCTGCCCACACAGA
GTCGGCCGCGGCGACGGCCGCGCTGACGGAGGATGAGGCGGAGGCGCCGC
ACCTGCCACACCTCGTGGTAGTGCCGAGCTCTGTGCTGAGCAACTGGGAG
GCGGAACTGCGCCGCTTCTGCCCCAAGCTGCGGGTGGCTGTCTACCACGG
CAGCGTTGCCAACCGCGCCCGCGTGCGTGAGGAGCTCTTGCCCATCATCA
AGCGCCGCCGCGGCCACGACAACGGCAGTGGCCGGGGCAGGGGCGGCGGC
GGCGGTGCCGAAGACTCGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6142:3201..3521+

>mRNA_P-wetherbeei_contig6142.2.1 ID=mRNA_P-wetherbeei_contig6142.2.1|Name=mRNA_P-wetherbeei_contig6142.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=321bp|location=Sequence derived from alignment at P-wetherbeei_contig6142:3201..3521+ (Phaeothamnion wetherbeei SAG_119_79)
ACGGCCGAAGCGGCCAAGGCGGCCGAAGCTGCCGACTCTGCCCACACAGA
GTCGGCCGCGGCGACGGCCGCGCTGACGGAGGATGAGGCGGAGGCGCCGC
ACCTGCCACACCTCGTGGTAGTGCCGAGCTCTGTGCTGAGCAACTGGGAG
GCGGAACTGCGCCGCTTCTGCCCCAAGCTGCGGGTGGCTGTCTACCACGG
CAGCGTTGCCAACCGCGCCCGCGTGCGTGAGGAGCTCTTGCCCATCATCA
AGCGCCGCCGCGGCCACGACAACGGCAGTGGCCGGGGCAGGGGCGGCGGC
GGCGGTGCCGAAGACTCGGAG
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