mRNA_P-wetherbeei_contig614.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig614.3.1
Unique NamemRNA_P-wetherbeei_contig614.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig614.3.1 vs. uniprot
Match: D7FT14_ECTSI (Putative AAA family ATP ase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT14_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.950e-17
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 VDSMLSMRAADESDASRRLKTEFLIQLDGAVTKASDRVLLVGATNRPQ 144
            VDSMLSMR+ADE++ASRRLKTEFLIQLDGA TKA+DRVL+VGATNRPQ
Sbjct:  340 VDSMLSMRSADENEASRRLKTEFLIQLDGAGTKAADRVLVVGATNRPQ 387
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BLAST of mRNA_P-wetherbeei_contig614.3.1 vs. uniprot
Match: A0A6H5JMF7_9PHAE (AAA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMF7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.000e-17
Identity = 42/48 (87.50%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:    1 VDSMLSMRAADESDASRRLKTEFLIQLDGAVTKASDRVLLVGATNRPQ 144
            VDSMLSMR+ADE++ASRRLKTEFLIQLDGA TKA+DRVL+VGATNRPQ
Sbjct:  610 VDSMLSMRSADENEASRRLKTEFLIQLDGAGTKAADRVLVVGATNRPQ 657
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BLAST of mRNA_P-wetherbeei_contig614.3.1 vs. uniprot
Match: A0A835YR71_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YR71_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.770e-15
Identity = 37/48 (77.08%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:    1 VDSMLSMRAADESDASRRLKTEFLIQLDGAVTKASDRVLLVGATNRPQ 144
            VDSML  R++DE++ASRRLKTEFL+QLDGA TK++DRVL+VGATNRPQ
Sbjct:  120 VDSMLCQRSSDENEASRRLKTEFLVQLDGAGTKSTDRVLVVGATNRPQ 167
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BLAST of mRNA_P-wetherbeei_contig614.3.1 vs. uniprot
Match: A0A7S4FLH8_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FLH8_9EUGL)

HSP 1 Score: 71.6 bits (174), Expect = 4.270e-15
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 VDSMLSMRAADESDASRRLKTEFLIQLDGAVTKASDRVLLVGATNRPQ 144
            VDS+L+MR+ +E DA RR+KTEFL+QLDGA T +SDR+L++GATNRPQ
Sbjct:   26 VDSLLAMRSENEGDAVRRVKTEFLVQLDGAATCSSDRILVIGATNRPQ 73
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BLAST of mRNA_P-wetherbeei_contig614.3.1 vs. uniprot
Match: A0A2R5GZC6_9STRA (26S proteasome regulatory subunit 4 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GZC6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 6.640e-14
Identity = 33/48 (68.75%), Postives = 43/48 (89.58%), Query Frame = 1 
Query:    1 VDSMLSMRAADESDASRRLKTEFLIQLDGAVTKASDRVLLVGATNRPQ 144
            VDS+L+ R +DE++ASRR+KTEFL+QLDGA T A +RVL++GATNRPQ
Sbjct:  358 VDSLLTQRTSDENEASRRIKTEFLVQLDGAATSAGERVLVIGATNRPQ 405
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BLAST of mRNA_P-wetherbeei_contig614.3.1 vs. uniprot
Match: A0A7S4DPT9_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S4DPT9_9EUKA)

HSP 1 Score: 70.9 bits (172), Expect = 8.000e-14
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 VDSMLSMRAADESDASRRLKTEFLIQLDGAVTKASDRVLLVGATNRPQ 144
            +DS+LS R   E +ASRR+KTEFL+QLDGA T + DR+LLVGATNRPQ
Sbjct:   26 IDSLLSQRGEGEFEASRRIKTEFLVQLDGAATSSEDRILLVGATNRPQ 73
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BLAST of mRNA_P-wetherbeei_contig614.3.1 vs. uniprot
Match: A0A058YZD5_FONAL (AAA domain-containing protein n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058YZD5_FONAL)

HSP 1 Score: 72.0 bits (175), Expect = 1.020e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 VDSMLSMRAADESDASRRLKTEFLIQLDGAVTKASDRVLLVGATNRPQ 144
            +DS+LS R   E DASRR+KTEFLIQLDGA T A D++L+VGATNRPQ
Sbjct:  133 IDSLLSQRTDGEQDASRRIKTEFLIQLDGAATNADDQILIVGATNRPQ 180
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BLAST of mRNA_P-wetherbeei_contig614.3.1 vs. uniprot
Match: A0A662XLN1_9STRA (ATPase_AAA_core domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XLN1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.400e-13
Identity = 32/48 (66.67%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 VDSMLSMRAADESDASRRLKTEFLIQLDGAVTKASDRVLLVGATNRPQ 144
            +DS+L+ R+++E++ASRR+KTEFL+QLDGA TKA D +L+VGATNRPQ
Sbjct:   72 IDSLLTQRSSEENEASRRMKTEFLVQLDGAGTKAKDIILVVGATNRPQ 119
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BLAST of mRNA_P-wetherbeei_contig614.3.1 vs. uniprot
Match: A0A7S4KWM4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4KWM4_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 1.450e-13
Identity = 32/48 (66.67%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 VDSMLSMRAADESDASRRLKTEFLIQLDGAVTKASDRVLLVGATNRPQ 144
            +DS+LS R+  E +ASRRLKTEFL+Q+DGA T   DR+LL+GATNRPQ
Sbjct:    1 IDSLLSSRSEGEQEASRRLKTEFLVQMDGAATDGQDRLLLIGATNRPQ 48
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BLAST of mRNA_P-wetherbeei_contig614.3.1 vs. uniprot
Match: A0A0S7IZ22_9TELE (FIGL1 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7IZ22_9TELE)

HSP 1 Score: 70.9 bits (172), Expect = 1.660e-13
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 VDSMLSMRAADESDASRRLKTEFLIQLDGAVTKASDRVLLVGATNRPQ 144
            +DS+LS R   E D+SRR+KTEFL+QLDGA T A DR+L+VGATNRPQ
Sbjct:   81 IDSLLSQRTDGEHDSSRRIKTEFLVQLDGAATAADDRILVVGATNRPQ 128
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig614.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT14_ECTSI1.950e-1787.50Putative AAA family ATP ase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JMF7_9PHAE2.000e-1787.50AAA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YR71_9STRA1.770e-1577.08P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S4FLH8_9EUGL4.270e-1568.75Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A2R5GZC6_9STRA6.640e-1468.7526S proteasome regulatory subunit 4 n=1 Tax=Hondae... [more]
A0A7S4DPT9_9EUKA8.000e-1468.75Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A058YZD5_FONAL1.020e-1370.83AAA domain-containing protein n=1 Tax=Fonticula al... [more]
A0A662XLN1_9STRA1.400e-1366.67ATPase_AAA_core domain-containing protein n=1 Tax=... [more]
A0A7S4KWM4_9EUKA1.450e-1366.67Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
A0A0S7IZ22_9TELE1.660e-1368.75FIGL1 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig614contigP-wetherbeei_contig614:9096..9239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FT14
Preferred nameFIGNL1
PFAMsAAA,Vps4_C
Model size144
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000018,GO:0000070,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000287,GO:0000819,GO:0001503,GO:0001649,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006163,GO:0006282,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007140,GO:0007276,GO:0008150,GO:0008152,GO:0008283,GO:0008568,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009314,GO:0009611,GO:0009628,GO:0009966,GO:0009968,GO:0009987,GO:0010212,GO:0010569,GO:0010646,GO:0010648,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0019219,GO:0019222,GO:0019637,GO:0019693,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030154,GO:0031110,GO:0031114,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032886,GO:0033043,GO:0033687,GO:0034641,GO:0042623,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043244,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0046034,GO:0046483,GO:0046872,GO:0048232,GO:0048285,GO:0048471,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048609,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051013,GO:0051052,GO:0051128,GO:0051171,GO:0051276,GO:0051321,GO:0051493,GO:0051704,GO:0051716,GO:0051726,GO:0055086,GO:0060255,GO:0060548,GO:0065007,GO:0070013,GO:0070507,GO:0071214,GO:0071478,GO:0071479,GO:0071704,GO:0071840,GO:0072521,GO:0080090,GO:0080134,GO:0080135,GO:0098813,GO:0104004,GO:0140013,GO:0140014,GO:0140096,GO:1901135,GO:1901360,GO:1901564,GO:1901879,GO:1902531,GO:1902532,GO:1902903,GO:1903046,GO:1903047,GO:2000779,GO:2001020,GO:2001233,GO:2001234,GO:2001242,GO:2001243
Exons1
Evalue1.2e-16
EggNOG OGsCOG0464@1|root,KOG0740@2759|Eukaryota
DescriptionBelongs to the AAA ATPase family
Cds size135
COG categoryO
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186891.7371383-UTR-P-wetherbeei_contig614:9095..91041683186891.7371383-UTR-P-wetherbeei_contig614:9095..9104Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig614 9096..9104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186891.7508721-CDS-P-wetherbeei_contig614:9104..92391683186891.7508721-CDS-P-wetherbeei_contig614:9104..9239Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig614 9105..9239 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig614.3.1prot_P-wetherbeei_contig614.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig614 9105..9239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig614.3.1

>prot_P-wetherbeei_contig614.3.1 ID=prot_P-wetherbeei_contig614.3.1|Name=mRNA_P-wetherbeei_contig614.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=45bp
MLSMRAADESDASRRLKTEFLIQLDGAVTKASDRVLLVGATNRPQ
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mRNA from alignment at P-wetherbeei_contig614:9096..9239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig614.3.1 ID=mRNA_P-wetherbeei_contig614.3.1|Name=mRNA_P-wetherbeei_contig614.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig614:9096..9239+ (Phaeothamnion wetherbeei SAG_119_79)
GTGGACTCGATGCTGTCGATGCGGGCAGCGGACGAGAGCGACGCGTCGCG
CCGCCTCAAGACGGAGTTCTTGATCCAGCTCGACGGTGCGGTCACCAAGG
CAAGCGACCGCGTCCTTCTCGTCGGAGCCACCAACCGGCCCCAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig614:9096..9239+

>mRNA_P-wetherbeei_contig614.3.1 ID=mRNA_P-wetherbeei_contig614.3.1|Name=mRNA_P-wetherbeei_contig614.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=135bp|location=Sequence derived from alignment at P-wetherbeei_contig614:9096..9239+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGTCGATGCGGGCAGCGGACGAGAGCGACGCGTCGCGCCGCCTCAA
GACGGAGTTCTTGATCCAGCTCGACGGTGCGGTCACCAAGGCAAGCGACC
GCGTCCTTCTCGTCGGAGCCACCAACCGGCCCCAG
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