mRNA_P-wetherbeei_contig6136.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6136.1.1
Unique NamemRNA_P-wetherbeei_contig6136.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6136.1.1 vs. uniprot
Match: D8LE51_ECTSI (SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE51_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 2.940e-66
Identity = 182/492 (36.99%), Postives = 244/492 (49.59%), Query Frame = 1
Query:    1 SAAGRNTSERGGWISAEDIQSC--RTHVAV-VSMTVVGSVTTSAREFQALMALPVLSPALRSALLQPAPRSAPPLRPEEIPREISVFPERVAALAEAWAPPVGGQ----------------PTIEVQREPPPG---VPASLWRALAASLNLSQLRAVRAVTEGGVGGVTLLQGPPGTGKTSTILALLAALLVGACPTPPSHLSKSRKRRGPAAIIPGAALATDRMDIDDSCGNFGGGI----------------VQRRPERVLVCAPSNAAVDEIVLRLRTDGLVGPDGERFFPPIVRVTG---DG---GXXXXXGRDGGAGLEVDPRVAEVSLDVVAQKQWDAIQCGSRALCRLDALCTARIVLATLSGVASEKLVQAALGPDGSGGXXXXXXXXXXXXXXXXDRR-RGELYFDALIVDEAAQAVEPSVLIPFKHNPHCVVLVGDHKQLPATVFSNDVAAAEYGRSLFQRLSSGGHPVVMLDTQYRMHPEV 1341
            S  G     RGGW+  +DIQ C    +  V V+++  GS+ T+ REFQA+M+LP L   +   LL P+   AP      +PR + +    +   +       GG                 P+      PPPG   VP  LW +L    N SQ++A+R V +G   G TLLQGPPGTGKT TI+ ++  LL GACP P  H S+  +         GA+ +  ++ I  S    G                   +++   R+L+ APSNAAVDE+VLRL  +G+ G DG   FP +VRV G   DG   G     G  GG        V  VSL+ +  ++ +  +C S    RL  L  A +V ATLSG  S  LV+  +                        R  +  L FDA+++DEAAQAVEPS +IP K+NP  V++VGD  QLPAT+FS D   A Y +SLF RL  GGHP  MLDTQYRMHP++
Sbjct:  377 STGGDGVGGRGGWLPLKDIQECLGNDNCGVPVTISSAGSLVTACREFQAVMSLPELPERVHEFLLNPS--KAPTTL---LPRFVVI--NHLPVSSSRGGREAGGXXXXXXXXXXXXXDLSPPSSVYTPXPPPGPSSVPPKLWMSLIQKFNSSQVQAMRKVVDGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGACPFPSGHNSEGGEG--------GASGSGAKVTIGSSISGKGKXXXXXXXXXQKAARIVSPLEKASPRILIVAPSNAAVDELVLRLCQEGVPGVDGRVRFPRVVRVGGPRADGERSGTVDGRGGSGGRDGVTSTMVEGVSLERLVTERMERTKC-SAVSARLGILLRAEVVCATLSGSGSHILVETVMMSMQLAATKLSKTKKGQKKAKAAGREGQTILGFDAVVMDEAAQAVEPSSMIPLKYNPRAVIMVGDPAQLPATIFSKDAQRANYAQSLFLRLQRGGHPKTMLDTQYRMHPDI 852          
BLAST of mRNA_P-wetherbeei_contig6136.1.1 vs. uniprot
Match: A0A6H5JS06_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS06_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 7.570e-55
Identity = 138/362 (38.12%), Postives = 184/362 (50.83%), Query Frame = 1
Query:  331 PPPG---VPASLWRALAASLNLSQLRAVRAVTEGGVGGVTLLQGPPGTGKTSTILALLAALLVGACPTPPSHLSKSRKRRGPAAIIPGAALA------TDRMDIDDSCGNFGGGIVQRRPERVLVCAPSNAAVDEIVLRLRTDGLVGPDGERFFPPIVRVTG-------DGGXXXXXGRDGGAGLEVDPRVAEVSLDVVAQKQWDAIQCGSRALCRLDALCTARIVLATLSGVASEKLVQAALGPDGSGGXXXXXXXXXXXXXXXXDRRRGE---------LYFDALIVDEAAQAVEPSVLIPFKHNPHCVVLVGDHKQLPATVFSNDVAAAEYGRSLFQRLSSGGHPVVMLDTQYRMHPEV 1341
            PPPG   VP  LW +L    N SQ++A+R V +G   G TLLQGPPGTGKT TI+ ++  LL G CP P  H S+       A +  G++++        +             + +  P R+L+ APSNAAVDE+VLRL  +G+ G DG   FP +VRV G        G      G  GG        V  VSL+ +  ++ +  +C S    RL  L  A +V ATLSG  S  LV+  +                        R++ +         L FDA+++     AVEPS +IP K+NP  V++VGD  QLPAT+FS D   A Y +SLF RL  GGHP  MLDTQYRMHP++
Sbjct:  697 PPPGPSGVPPKLWMSLIQKFNSSQVQAMRKVVDGSPSGFTLLQGPPGTGKTRTIMGIVGVLLAGGCPFPSGHSSEGEVSGSGAKVTIGSSISGKGKGKKGKQKGQQKAARIVSPLEKASP-RILIVAPSNAAVDELVLRLCQEGVPGVDGRVRFPRVVRVGGPRADDERSGDVDGRGGSGGGKDGMTSTVVERVSLERLVTERMERTKC-SAVSARLGILLRAEVVCATLSGSGSHILVETVM--------MSMQLAATKLAKTKKGRKKAKAAGHGGQAILGFDAVVM-----AVEPSSMIPLKYNPRAVIMVGDPAQLPATIFSKDAQRANYAQSLFLRLQRGGHPKTMLDTQYRMHPDI 1043          
BLAST of mRNA_P-wetherbeei_contig6136.1.1 vs. uniprot
Match: A0A8J2WTU9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WTU9_9STRA)

HSP 1 Score: 180 bits (457), Expect = 4.350e-46
Identity = 140/343 (40.82%), Postives = 176/343 (51.31%), Query Frame = 1
Query:  337 PGVPASLWRALAASLNLSQLRAVRAVTEGGVGGVTLLQGPPGTGKTSTILALLAALLVGACPTPPSHLSKSRKRRGPAAIIPGAAL-ATDRMDIDDSCGNFGGGIVQ--RRPERVLVCAPSNAAVDEIVLRLRTDGLVGPDGERFFPPIVRVTGDGGXXXXXGRDGGAGLEVDPRVAEV---SLDVVAQKQWDAIQCGSRALCRLDALCTARIVLATLSGVASEKLVQA--ALGPDGSGGXXXXXXXXXXXXXXXXDRRRGELYFDALIVDEAAQAVEPSVLIPFKHNPHCVVLVGDHKQLPATVFSNDVAAAEYGRSLFQRLSSGGHPVVMLDTQYRMHPEV 1341
            P  PA LW+AL +S N SQ  A+ A  +       L+QGPPGTGKT TIL + AALL G    PP      R RRGP  +    ++ AT R+       N  GG++Q   R  R+LV APSNAAVDE+  R   +G+ GPDG      + RV   GG             E  P  A +   +LDV+A++Q      G RA     AL  A IV+ATLSG A   L +A  ++ P                          E  FDA++VDEAAQAVEPS  IP ++ P  VVLVGD  QL AT+ S     A YG+SLF+RL  GGHP  +L TQYRM  ++
Sbjct:  206 PRTPAPLWQALRSSSNASQFAAIAAGADATP--FALVQGPPGTGKTRTILGVCAALLHGDLAEPPPP---QRSRRGPGMLSSQTSMRATTRI-------NAPGGLLQAAERSRRILVTAPSNAAVDEVAARFVREGVPGPDGRIRRVRLCRVGTVGGSHR---------TEATPHEALLRGYTLDVLAERQ-----AGRRAERVTSALLQADIVVATLSGCAHSSLAEAQQSIAP--------------------------EPLFDAVVVDEAAQAVEPSTYIPLRYGPKRVVLVGDPAQLAATLLSPATERAGYGQSLFERLWRGGHPTSLLRTQYRMQRDL 496          
BLAST of mRNA_P-wetherbeei_contig6136.1.1 vs. uniprot
Match: A0A3M6VIN3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VIN3_9STRA)

HSP 1 Score: 172 bits (436), Expect = 7.240e-43
Identity = 154/437 (35.24%), Postives = 202/437 (46.22%), Query Frame = 1
Query:   88 SMTVVGSVTTSAREFQALMALPVLSPALRSALLQPAPRSAPPLRPEEIPREISVFPERVAALAEAWAPPVGGQPTIEVQREPPPG--VPAS-----LWRALAASLNLSQLRAVRAVTEGGVGGVTLLQGPPGTGKTSTILALLAALLVGACPTPPSHLSKSRKRRGPAAIIPGAALATDRMDIDDSCGNFGGGIVQRRPERVLVCAPSNAAVDEIVLRLRTDGLV-GPDGERFFPPIVRVTGDGGXXXXXG----RDGGAGLEVDPR-------VAEVSLDVVAQKQWDAIQCGSRALCRLDALCTARIVLATLSGVASEKLVQAALGPDGSGGXXXXXXXXXXXXXXXXDRRRGELYFDALIVDEAAQAVEPSVLIPFKHNPHCVVLVGDHKQLPATVFSNDVAAAEYGRSLFQRLSSGGHPVVMLDTQYRMHPEV 1341
            S+  V + TTSAREFQA+ A+P     L+ ALL+                                     G+ T+   ++ PP    P+S     L + L    N SQ++A+      G     ++QGPPGTGKT TIL LL+ALL GA       LS  +K +G A I  GA+L + R          G   V     R+LV APSNAAVDE+V+R+ ++GL  G  GE + P  VRV               R+     +   +       V EV L+ +  K     Q   +A  R   + +A+IV  TLSG  S  + + A                                FDALI+DEAAQAVE S LIPFK  PH VV VGDH+QLPATV S ++ +  Y RSL QRL   G PV++L  QYRMHPE+
Sbjct: 1041 SLQQVHNTTTSAREFQAIRAIPFFPSDLQQALLR-------------------------------------GRLTMSTTKQTPPHSVAPSSVLSPRLLKYLRKHFNDSQVQAILGCL--GEDSRVIIQGPPGTGKTKTILGLLSALLDGA------GLSTLQKTKGTARIRAGASLQSARTSA-------GSNAVAGTSIRILVAAPSNAAVDELVVRVLSEGLFDGEKGESYRPQFVRVGRPESSQQLSSLAAVREASESKKNRKKMRKYAREVEEVLLESLVTKHRKTFQTVKQA--REAIIKSAQIVFCTLSGAGSVAMCEFAQD------------------------------FDALIIDEAAQAVEASTLIPFKFRPHRVVFVGDHRQLPATVISKELISMGYDRSLQQRLVENGSPVLLLTQQYRMHPEI 1393          
BLAST of mRNA_P-wetherbeei_contig6136.1.1 vs. uniprot
Match: A0A0M0J369_9EUKA (DNA2 nam7 helicase family protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J369_9EUKA)

HSP 1 Score: 167 bits (423), Expect = 1.630e-41
Identity = 135/351 (38.46%), Postives = 170/351 (48.43%), Query Frame = 1
Query:  331 PPPGV--PASLWRALAASLNLSQLRAVRAVTEGGVGGVTLLQGPPGTGKTSTILALLAALLVGACPTPPSH----LSKSRKRRGPAAIIPGAALATDRMDIDDSCGNFGGGIVQRRPERVLVCAPSNAAVDEIVLRLRTD---GLVGPDGERFFPPIVRVTGDGGXXXXXGRDGGAGLEVDPRVAEVSLDVVAQKQWDAIQCGSRALCRLDALCT-----ARIVLATLSGVASEKLVQAALGPDGSGGXXXXXXXXXXXXXXXXDRRRGELYFDALIVDEAAQAVEPSVLIPFKHNPHCVVLVGDHKQLPATVFSNDVAAAEYGRSLFQRLSSGGHPVVMLDTQYRMHPEV 1341
            PPP +  P SLW A+ A+ N SQL A+R    G   GVTL+QGPPGTGKT TIL +L+ LL        SH    L+KS +         G A +TDR        + G  + +  P+ VLVCAPSNAA+DEIV RL      G++   GE F P +VRV                G  V   + EV+L+ +A+K+   +      +   DA  T     A IV  TLS        Q   G                              FD +++DEAAQAVE S LIP K+    ++LVGD  QLPATVFS+      Y +SLFQRL  GG  V ML TQYRMHP +
Sbjct:  229 PPPRLQKPPSLWPAIKATHNPSQLAAIRTCLCGR--GVTLIQGPPGTGKTKTILGILSVLLA-------SHSAHTLTKSERSSWRDVGEGGDAASTDRHV------HLGRAVAEEPPKHVLVCAPSNAAIDEIVSRLLRHTGPGMLNARGESFLPYVVRV----------------GPNVKESLIEVALETMAKKRMATLLEHGETI-SFDAAKTLVLNEASIVCTTLSCAGYSIFSQLKQG------------------------------FDTVLIDEAAQAVEVSTLIPLKYACRRLILVGDPSQLPATVFSDHSMKHNYEQSLFQRLQIGGQRVAMLTTQYRMHPAI 517          
BLAST of mRNA_P-wetherbeei_contig6136.1.1 vs. uniprot
Match: D0MSE8_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0MSE8_PHYIT)

HSP 1 Score: 166 bits (421), Expect = 2.920e-41
Identity = 153/430 (35.58%), Postives = 194/430 (45.12%), Query Frame = 1
Query:   88 SMTVVGSVTTSAREFQALMALPVLSPALRSALLQPAPRSAPPLRPEEIPREISVFPERVAALAEAWAPPVGGQPTIEVQREPPPGVPASLWRALAASLNLSQLRAVRAVTEGGVGGVTLLQGPPGTGKTSTILALLAALLVGACPTPPSHLSKSRKRRGPAAIIPGAALATDRMDIDDSCGNFGGGIVQRRPERVLVCAPSNAAVDEIVLRLRTDGLV-GPDGERFFPPIVRV----TGDGGXXXXXGRDGGAGLEVDP-------RVAEVSLDVVAQKQWDAIQCGSRALCRLDALCTARIVLATLSGVASEKLVQAALGPDGSGGXXXXXXXXXXXXXXXXDRRRGELYFDALIVDEAAQAVEPSVLIPFKHNPHCVVLVGDHKQLPATVFSNDVAAAEYGRSLFQRLSSGGHPVVMLDTQYRMHPEV 1341
            SM  V + TTSAREFQA+ A+      L+  LL+   +  P  RPE+ P   S                                + + L + L    N SQ+ A+      G     ++QGPPGTGKT TIL LL+ALL GA       L+  +K +G   I  GA+L   R              V     RVLV APSNAAVDE+VLR+ ++GL  G  GE + P IVRV    +          R+                 V EV L+ +  K         +A  R   +  A+IV  TLSG  S  + + A                                FDALI+DEAAQAVE S LIPFK  PH VVLVGDH+QLPATV S  + +  Y RSL QRL   G PV++L+ QYRMHPE+
Sbjct:  192 SMQQVHNTTTSAREFQAIKAISFFPNDLKQVLLRG--QLVPTTRPEKKPVASSSM------------------------------LSSRLLKYLHKHYNDSQVLAILGCL--GEDSRVIIQGPPGTGKTKTILGLLSALLDGA------GLATLQKTKGTTRIRVGASLQNARASAVSKT-------VAETSIRVLVAAPSNAAVDELVLRVLSEGLYDGEKGESYRPRIVRVGRPESSQQLASVAAAREXXXXXXXXXXXXXYAREVEEVLLESLVTKHRSTFPTAKQA--RQAIIKNAQIVFCTLSGAGSVAMCEFAQD------------------------------FDALIIDEAAQAVEASTLIPFKFRPHRVVLVGDHRQLPATVISKSLVSMGYDRSLQQRLVENGSPVLLLNQQYRMHPEI 542          
BLAST of mRNA_P-wetherbeei_contig6136.1.1 vs. uniprot
Match: A0A0W8DSQ4_PHYNI (Uncharacterized protein n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DSQ4_PHYNI)

HSP 1 Score: 165 bits (418), Expect = 3.080e-41
Identity = 127/314 (40.45%), Postives = 155/314 (49.36%), Query Frame = 1
Query:  442 LLQGPPGTGKTSTILALLAALLVGACPTPPSHLSKSRKRRGPAAIIPGAALATDRMDIDDSCGNFGGGIVQRRPERVLVCAPSNAAVDEIVLRLRTDGLV-GPDGERFFPPIVRVTGDGGXXXXXGRDGGAGLEVDP-------------RVAEVSLDVVAQKQWDAIQCGSRALCRLDALCTARIVLATLSGVASEKLVQAALGPDGSGGXXXXXXXXXXXXXXXXDRRRGELYFDALIVDEAAQAVEPSVLIPFKHNPHCVVLVGDHKQLPATVFSNDVAAAEYGRSLFQRLSSGGHPVVMLDTQYRMHPEV 1341
            ++QGPPGTGKT TIL LL+ALL GA       LS  +K +G A I  GA+L   R              V     R+LV APSNAAVDE+VLR+ ++GL  G  GE + P IVRV   G           A  E                 V EV L+ +  K         +A  R   +  A+IV  TLSG  S  + + A                                FDALI+DEAAQAVE S LIPFK  PH VVLVGDH+QLPATV S ++ +  Y RSL QRL   G PV++L+ QYRMHPE+
Sbjct:  156 IIQGPPGTGKTKTILGLLSALLDGA------GLSTLQKAKGTARIRVGASLQNARTSAVSKT-------VAETSIRILVAAPSNAAVDELVLRVLSEGLYDGEKGESYRPRIVRV---GRPESQQLSSLAAAREAXXXXXXXXXXXXYAREVEEVLLESLVTKHRSTFPTVKQA--RQAIIKNAQIVFCTLSGAGSVAMCEFAQD------------------------------FDALIIDEAAQAVEASTLIPFKFRPHRVVLVGDHRQLPATVISKNLVSMGYDRSLQQRLVENGSPVLLLNQQYRMHPEI 421          
BLAST of mRNA_P-wetherbeei_contig6136.1.1 vs. uniprot
Match: A0A833TJ33_PHYIN (ATPase family associated domain-containing protein 12 n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833TJ33_PHYIN)

HSP 1 Score: 166 bits (421), Expect = 6.700e-41
Identity = 153/430 (35.58%), Postives = 194/430 (45.12%), Query Frame = 1
Query:   88 SMTVVGSVTTSAREFQALMALPVLSPALRSALLQPAPRSAPPLRPEEIPREISVFPERVAALAEAWAPPVGGQPTIEVQREPPPGVPASLWRALAASLNLSQLRAVRAVTEGGVGGVTLLQGPPGTGKTSTILALLAALLVGACPTPPSHLSKSRKRRGPAAIIPGAALATDRMDIDDSCGNFGGGIVQRRPERVLVCAPSNAAVDEIVLRLRTDGLV-GPDGERFFPPIVRV----TGDGGXXXXXGRDGGAGLEVDP-------RVAEVSLDVVAQKQWDAIQCGSRALCRLDALCTARIVLATLSGVASEKLVQAALGPDGSGGXXXXXXXXXXXXXXXXDRRRGELYFDALIVDEAAQAVEPSVLIPFKHNPHCVVLVGDHKQLPATVFSNDVAAAEYGRSLFQRLSSGGHPVVMLDTQYRMHPEV 1341
            SM  V + TTSAREFQA+ A+      L+  LL+   +  P  RPE+ P   S                                + + L + L    N SQ+ A+      G     ++QGPPGTGKT TIL LL+ALL GA       L+  +K +G   I  GA+L   R              V     RVLV APSNAAVDE+VLR+ ++GL  G  GE + P IVRV    +          R+                 V EV L+ +  K         +A  R   +  A+IV  TLSG  S  + + A                                FDALI+DEAAQAVE S LIPFK  PH VVLVGDH+QLPATV S  + +  Y RSL QRL   G PV++L+ QYRMHPE+
Sbjct: 1069 SMQQVHNTTTSAREFQAIKAISFFPNDLKQVLLRG--QLVPTTRPEKKPVASSSM------------------------------LSSRLLKYLHKHYNDSQVLAILGCL--GEDSRVIIQGPPGTGKTKTILGLLSALLDGA------GLATLQKTKGTTRIRVGASLQNARASAVSKT-------VAETSIRVLVAAPSNAAVDELVLRVLSEGLYDGEKGESYRPRIVRVGRPESSQQLASVAAAREXXXXXXXXXXXXXYAREVEEVLLESLVTKHRSTFPTAKQA--RQAIIKNAQIVFCTLSGAGSVAMCEFAQD------------------------------FDALIIDEAAQAVEASTLIPFKFRPHRVVLVGDHRQLPATVISKSLVSMGYDRSLQQRLVENGSPVLLLNQQYRMHPEI 1419          
BLAST of mRNA_P-wetherbeei_contig6136.1.1 vs. uniprot
Match: W2H640_PHYPR (Uncharacterized protein n=9 Tax=Phytophthora parasitica TaxID=4792 RepID=W2H640_PHYPR)

HSP 1 Score: 166 bits (421), Expect = 6.710e-41
Identity = 153/432 (35.42%), Postives = 191/432 (44.21%), Query Frame = 1
Query:   88 SMTVVGSVTTSAREFQALMALPVLSPALRSALLQPAPRSAPPLRPEEIPREISVFPERVAALAEAWAPPVGGQPTIEVQREPPPGVPASLWRALAASLNLSQLRAVRAVTEGGVGGVTLLQGPPGTGKTSTILALLAALLVGACPTPPSHLSKSRKRRGPAAIIPGAALATDRMDIDDSCGNFGGGIVQRRPERVLVCAPSNAAVDEIVLRLRTDGLV-GPDGERFFPPIVRVTGDGGXXXXXGRDGGAGLEVDP-------------RVAEVSLDVVAQKQWDAIQCGSRALCRLDALCTARIVLATLSGVASEKLVQAALGPDGSGGXXXXXXXXXXXXXXXXDRRRGELYFDALIVDEAAQAVEPSVLIPFKHNPHCVVLVGDHKQLPATVFSNDVAAAEYGRSLFQRLSSGGHPVVMLDTQYRMHPEV 1341
            SM  V + TTSAREFQA+ A+      L+  LL     S        +P    + P                                 L + L    N SQ++A+      G     ++QGPPGTGKT TIL LL+ALL GA       LS  +K +G A I  GA+L   R              V     R+LV APSNAAVDE+VLR+ ++GL  G  GE + P IVRV   G           A  E                 V EV L+ +  K         +A  R   +  A+IV  TLSG  S  + + A                                FDALI+DEAAQAVE S LIPFK  PH VVLVGDH+QLPATV S ++ +  Y RSL QRL   G PV++L+ QYRMHPE+
Sbjct: 1076 SMQQVHNTTTSAREFQAIKAISFFPNDLKQVLLSGQLVSTTRAEKRFVPSSSMISPR--------------------------------LLKYLQKHYNDSQVQAILGCL--GEDSRVIIQGPPGTGKTKTILGLLSALLDGA------GLSTLQKAKGTARIRVGASLQNARTSAVSKT-------VAETSIRILVAAPSNAAVDELVLRVLSEGLYDGEKGESYRPRIVRV---GRPESQQLSSLAAAREAXXXXXXXXXXXXYAREVEEVLLESLVTKHRSTFPTVKQA--RQAIIKNAQIVFCTLSGAGSVAMCEFAQD------------------------------FDALIIDEAAQAVEASTLIPFKFRPHRVVLVGDHRQLPATVISKNLVSMGYDRSLQQRLVENGSPVLLLNQQYRMHPEI 1425          
BLAST of mRNA_P-wetherbeei_contig6136.1.1 vs. uniprot
Match: H3GXS9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GXS9_PHYRM)

HSP 1 Score: 166 bits (419), Expect = 1.190e-40
Identity = 153/430 (35.58%), Postives = 199/430 (46.28%), Query Frame = 1
Query:   88 SMTVVGSVTTSAREFQALMALPVLSPALRSALLQPAPRSAPPLRPEEIPREISVFPERVAALAEAWAPPVGGQPTIEVQREPPPGVPASLWRALAASLNLSQLRAVRAVTEGGVGGVTLLQGPPGTGKTSTILALLAALLVGACPTPPSHLSKSRKRRGPAAIIPGAALATDRMDIDDSCGNFGGGIVQRRPERVLVCAPSNAAVDEIVLRLRTDGLV-GPDGERFFPPIVRV----TGDGGXXXXXGRDGGAGLEVDPR-------VAEVSLDVVAQKQWDAIQCGSRALCRLDALCTARIVLATLSGVASEKLVQAALGPDGSGGXXXXXXXXXXXXXXXXDRRRGELYFDALIVDEAAQAVEPSVLIPFKHNPHCVVLVGDHKQLPATVFSNDVAAAEYGRSLFQRLSSGGHPVVMLDTQYRMHPEV 1341
            S+  V + TTSAREFQA+ A+  L   L+  LL    + AP  + E+  ++ S                     +I   R         L + L    N SQ++A+            ++QGPPGTGKT TIL +L+ALL GA       LS  +K +G A I  GA+L + R              V     RVLV APSNAAVDE+V+R+ ++GL  G  GE + P IVRV    T          R+     +   +       V EV L+ +  K         +A  R   +  A+IV  TLSG  S  + + A                                FDALI+DEAAQAVE S LIPFK  PH VVLVGDH+QLPATV S  + +  Y RSL QRL   G PV++L  QYRMHPE+
Sbjct:  940 SLQQVHNTTTSAREFQAIKAISFLPNDLKQMLLHG--KQAPSSKTEQASKKTS------------------SSSSILSPR---------LLKYLQKHYNDSQMQAILGCLS--EDSRVIIQGPPGTGKTKTILGILSALLDGA------GLSTLQKAKGTARIRVGASLQSARTSAVSKT-------VAETSIRVLVAAPSNAAVDELVVRVLSEGLFDGGKGEPYRPRIVRVGRPETSQQQSGLAAAREASESKKNRKKMRKYAREVEEVLLESLVAKHRSTFPTVKQA--RQAIIKNAQIVFCTLSGAGSVAMCEFAQD------------------------------FDALIIDEAAQAVEASTLIPFKFRPHRVVLVGDHRQLPATVISKKLVSMGYDRSLQQRLVENGSPVLLLTKQYRMHPEI 1293          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6136.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE51_ECTSI2.940e-6636.99SEN1 protein n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JS06_9PHAE7.570e-5538.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2WTU9_9STRA4.350e-4640.82Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A3M6VIN3_9STRA7.240e-4335.24Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0M0J369_9EUKA1.630e-4138.46DNA2 nam7 helicase family protein n=1 Tax=Chrysoch... [more]
D0MSE8_PHYIT2.920e-4135.58Uncharacterized protein n=1 Tax=Phytophthora infes... [more]
A0A0W8DSQ4_PHYNI3.080e-4140.45Uncharacterized protein n=1 Tax=Phytophthora nicot... [more]
A0A833TJ33_PHYIN6.700e-4135.58ATPase family associated domain-containing protein... [more]
W2H640_PHYPR6.710e-4135.42Uncharacterized protein n=9 Tax=Phytophthora paras... [more]
H3GXS9_PHYRM1.190e-4035.58Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6136contigP-wetherbeei_contig6136:2010..3353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LE51
PFAMsAAA_11,AAA_12
Model size1344
Max annot lvl2759|Eukaryota
KEGG koko:K10706
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.82e-67
EggNOG OGsCOG1112@1|root,KOG1801@2759|Eukaryota
Ec32 ortholog descriptionSEN1 protein
Ec32 orthologEc-00_000970.1
Descriptionpositive regulation of termination of RNA polymerase II transcription, poly(A)-coupled
Cds size1344
COG categoryL
BRITEko00000,ko01000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186891.2890444-CDS-P-wetherbeei_contig6136:2009..33531683186891.2890444-CDS-P-wetherbeei_contig6136:2009..3353Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6136 2010..3353 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6136.1.1prot_P-wetherbeei_contig6136.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6136 2010..3353 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6136.1.1

>prot_P-wetherbeei_contig6136.1.1 ID=prot_P-wetherbeei_contig6136.1.1|Name=mRNA_P-wetherbeei_contig6136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=448bp
SAAGRNTSERGGWISAEDIQSCRTHVAVVSMTVVGSVTTSAREFQALMAL
PVLSPALRSALLQPAPRSAPPLRPEEIPREISVFPERVAALAEAWAPPVG
GQPTIEVQREPPPGVPASLWRALAASLNLSQLRAVRAVTEGGVGGVTLLQ
GPPGTGKTSTILALLAALLVGACPTPPSHLSKSRKRRGPAAIIPGAALAT
DRMDIDDSCGNFGGGIVQRRPERVLVCAPSNAAVDEIVLRLRTDGLVGPD
GERFFPPIVRVTGDGGGGGGSGRDGGAGLEVDPRVAEVSLDVVAQKQWDA
IQCGSRALCRLDALCTARIVLATLSGVASEKLVQAALGPDGSGGGAGGGV
GGGGGGKSGGDRRRGELYFDALIVDEAAQAVEPSVLIPFKHNPHCVVLVG
DHKQLPATVFSNDVAAAEYGRSLFQRLSSGGHPVVMLDTQYRMHPEVR
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mRNA from alignment at P-wetherbeei_contig6136:2010..3353+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6136.1.1 ID=mRNA_P-wetherbeei_contig6136.1.1|Name=mRNA_P-wetherbeei_contig6136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1344bp|location=Sequence derived from alignment at P-wetherbeei_contig6136:2010..3353+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCCGCCGGCCGCAATACCAGCGAGCGGGGCGGCTGGATCAGCGCGGA AGACATCCAGTCGTGCCGGACGCACGTCGCGGTGGTGTCGATGACGGTGG TGGGGAGTGTCACGACGTCGGCGCGCGAGTTCCAAGCCCTCATGGCGCTG CCTGTCCTCAGCCCGGCGCTCCGATCGGCGCTGCTCCAGCCGGCGCCGCG GTCGGCGCCGCCGCTCCGCCCAGAGGAGATTCCGCGGGAGATTTCGGTGT TTCCCGAGCGAGTGGCGGCGCTGGCAGAGGCGTGGGCGCCGCCTGTCGGC GGCCAGCCGACTATCGAGGTGCAGCGAGAGCCGCCGCCGGGTGTGCCAGC ATCGCTCTGGCGCGCGCTGGCGGCGTCACTCAACCTGTCGCAGCTGCGGG CAGTGCGGGCGGTGACGGAAGGCGGCGTCGGCGGCGTTACGCTGCTGCAG GGCCCGCCGGGTACGGGCAAGACCAGCACGATCCTCGCCCTCCTTGCCGC GCTCCTTGTAGGCGCTTGCCCCACACCGCCGAGCCACCTGTCGAAGAGCC GAAAGCGGCGCGGCCCCGCAGCGATAATCCCCGGTGCGGCTCTCGCCACG GACCGCATGGACATCGATGACAGCTGCGGCAACTTCGGCGGCGGCATCGT GCAGCGGCGACCCGAGCGCGTGCTTGTGTGCGCGCCGTCGAACGCGGCTG TGGACGAGATCGTTCTCCGTCTGCGGACAGATGGCCTCGTCGGACCGGAC GGCGAACGCTTCTTTCCGCCTATCGTTCGGGTGACCGGGGACGGCGGCGG CGGAGGCGGCAGCGGCCGCGACGGCGGCGCGGGATTGGAAGTGGACCCGC GTGTGGCAGAAGTGTCGCTCGATGTGGTGGCGCAGAAGCAGTGGGACGCC ATCCAGTGCGGTTCGAGGGCGCTGTGCCGGTTGGACGCGCTCTGCACGGC CCGCATCGTTCTCGCCACGCTGAGCGGCGTCGCCAGCGAGAAGCTCGTCC AGGCCGCCCTAGGGCCCGACGGTAGTGGCGGCGGTGCCGGCGGCGGCGTC GGTGGCGGCGGTGGCGGGAAGAGCGGCGGCGACCGCCGACGCGGGGAGCT CTACTTCGACGCGCTTATCGTCGATGAGGCGGCGCAGGCGGTGGAGCCGA GCGTGCTCATCCCGTTCAAGCACAACCCGCACTGCGTTGTGCTGGTCGGC GACCACAAGCAGCTGCCGGCCACCGTCTTCAGCAACGACGTGGCGGCGGC CGAGTACGGGCGGAGCCTCTTCCAGCGGCTCAGCAGCGGCGGTCACCCAG TCGTCATGCTGGACACGCAATACCGCATGCACCCCGAGGTGAGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6136:2010..3353+

>mRNA_P-wetherbeei_contig6136.1.1 ID=mRNA_P-wetherbeei_contig6136.1.1|Name=mRNA_P-wetherbeei_contig6136.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1344bp|location=Sequence derived from alignment at P-wetherbeei_contig6136:2010..3353+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGCCGCCGGCCGCAATACCAGCGAGCGGGGCGGCTGGATCAGCGCGGA
AGACATCCAGTCGTGCCGGACGCACGTCGCGGTGGTGTCGATGACGGTGG
TGGGGAGTGTCACGACGTCGGCGCGCGAGTTCCAAGCCCTCATGGCGCTG
CCTGTCCTCAGCCCGGCGCTCCGATCGGCGCTGCTCCAGCCGGCGCCGCG
GTCGGCGCCGCCGCTCCGCCCAGAGGAGATTCCGCGGGAGATTTCGGTGT
TTCCCGAGCGAGTGGCGGCGCTGGCAGAGGCGTGGGCGCCGCCTGTCGGC
GGCCAGCCGACTATCGAGGTGCAGCGAGAGCCGCCGCCGGGTGTGCCAGC
ATCGCTCTGGCGCGCGCTGGCGGCGTCACTCAACCTGTCGCAGCTGCGGG
CAGTGCGGGCGGTGACGGAAGGCGGCGTCGGCGGCGTTACGCTGCTGCAG
GGCCCGCCGGGTACGGGCAAGACCAGCACGATCCTCGCCCTCCTTGCCGC
GCTCCTTGTAGGCGCTTGCCCCACACCGCCGAGCCACCTGTCGAAGAGCC
GAAAGCGGCGCGGCCCCGCAGCGATAATCCCCGGTGCGGCTCTCGCCACG
GACCGCATGGACATCGATGACAGCTGCGGCAACTTCGGCGGCGGCATCGT
GCAGCGGCGACCCGAGCGCGTGCTTGTGTGCGCGCCGTCGAACGCGGCTG
TGGACGAGATCGTTCTCCGTCTGCGGACAGATGGCCTCGTCGGACCGGAC
GGCGAACGCTTCTTTCCGCCTATCGTTCGGGTGACCGGGGACGGCGGCGG
CGGAGGCGGCAGCGGCCGCGACGGCGGCGCGGGATTGGAAGTGGACCCGC
GTGTGGCAGAAGTGTCGCTCGATGTGGTGGCGCAGAAGCAGTGGGACGCC
ATCCAGTGCGGTTCGAGGGCGCTGTGCCGGTTGGACGCGCTCTGCACGGC
CCGCATCGTTCTCGCCACGCTGAGCGGCGTCGCCAGCGAGAAGCTCGTCC
AGGCCGCCCTAGGGCCCGACGGTAGTGGCGGCGGTGCCGGCGGCGGCGTC
GGTGGCGGCGGTGGCGGGAAGAGCGGCGGCGACCGCCGACGCGGGGAGCT
CTACTTCGACGCGCTTATCGTCGATGAGGCGGCGCAGGCGGTGGAGCCGA
GCGTGCTCATCCCGTTCAAGCACAACCCGCACTGCGTTGTGCTGGTCGGC
GACCACAAGCAGCTGCCGGCCACCGTCTTCAGCAACGACGTGGCGGCGGC
CGAGTACGGGCGGAGCCTCTTCCAGCGGCTCAGCAGCGGCGGTCACCCAG
TCGTCATGCTGGACACGCAATACCGCATGCACCCCGAGGTGAGA
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