mRNA_P-wetherbeei_contig6133.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6133.1.1
Unique NamemRNA_P-wetherbeei_contig6133.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6133.1.1 vs. uniprot
Match: A0A6H5L0B3_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0B3_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.650e-11
Identity = 38/74 (51.35%), Postives = 48/74 (64.86%), Query Frame = 1 
Query:  631 EAVEVRAFGLLMRDLAARARGLDWVEQDLVGRCCAPDAGGRPTFTEIANQLEAELLQ-MYPQTPEADSKASGHT 849
            E  EVRAFGL+ RD+A R+ G +W+ QDLV  C   DA  RP+F EI NQL AEL+Q + P +P   S  S H+
Sbjct:  248 EGTEVRAFGLMSRDMACRSAGCEWILQDLVPSCLQSDASHRPSFHEIINQLHAELMQSVEPSSPMVTSAKSLHS 321
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BLAST of mRNA_P-wetherbeei_contig6133.1.1 vs. uniprot
Match: A0A7S1SSS3_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SSS3_9CHLO)

HSP 1 Score: 69.7 bits (169), Expect = 1.030e-10
Identity = 30/43 (69.77%), Postives = 37/43 (86.05%), Query Frame = 3 
Query:  303 VARALEYLHARGVCHGDVYAHNILSDPEGRNVVLVDFGASFFY 431
            VA AL Y+H++G+CHGDVYAHN+L+D EG N VL D+GASFFY
Sbjct:   26 VASALAYMHSKGICHGDVYAHNVLADSEG-NAVLCDYGASFFY 67
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BLAST of mRNA_P-wetherbeei_contig6133.1.1 vs. uniprot
Match: D7FJA1_ECTSI (Putative Leucine Rich Repeat Protein Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA1_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.510e-9
Identity = 36/62 (58.06%), Postives = 41/62 (66.13%), Query Frame = 3 
Query:  270 PSRVLAFPLC*VARALEYLHARGVCHGDVYAHNILSDPEGRNVVLVDFGASFFYPTGAPELC 455
            P  VLA  L  VARA+ YLH + +CHGD+YAHN+L D E    VL DFGASFFYPT     C
Sbjct:  388 PVLVLAV-LLQVARAMSYLHEKAICHGDLYAHNVLVDGETGAAVLCDFGASFFYPTDRQHDC 448
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BLAST of mRNA_P-wetherbeei_contig6133.1.1 vs. uniprot
Match: A0A7S0M893_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M893_9CRYP)

HSP 1 Score: 62.4 bits (150), Expect = 3.480e-8
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 3 
Query:  303 VARALEYLHARGVCHGDVYAHNILSDPEGRNVVLVDFGASFFYPTGAPE 449
            +A  L  +HA GVCHGDVYAHN+L   + R + L DFGASFFY  G P+
Sbjct:   58 LAHGLAAIHAAGVCHGDVYAHNVLVSSDRRWMRLGDFGASFFYEPGGPD 106
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BLAST of mRNA_P-wetherbeei_contig6133.1.1 vs. uniprot
Match: A0A0D2MRW2_9CHLO (Leucine-rich repeat protein lrrA n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MRW2_9CHLO)

HSP 1 Score: 66.6 bits (161), Expect = 3.760e-8
Identity = 31/50 (62.00%), Postives = 35/50 (70.00%), Query Frame = 3 
Query:  303 VARALEYLHARGVCHGDVYAHNILSDPEGRNVVLVDFGASFFYPTGAPEL 452
            +A AL YLHAR VCHGD+YAHN+L  PE    +L DFGASF Y  G  EL
Sbjct:  380 LADALAYLHARRVCHGDMYAHNVLYCPETHQAILCDFGASFCYHEGQSEL 429
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BLAST of mRNA_P-wetherbeei_contig6133.1.1 vs. uniprot
Match: A0A7S4PR45_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas paramecium TaxID=2898 RepID=A0A7S4PR45_9CRYP)

HSP 1 Score: 62.8 bits (151), Expect = 3.820e-8
Identity = 32/56 (57.14%), Postives = 38/56 (67.86%), Query Frame = 3 
Query:  264 IHPSRVLAFPLC*VARALEYLHARGVCHGDVYAHNILSDPEGRNVVLVDFGASFFY 431
            +HP+ VL      +A  L  LHA G+CHGDVYAHNIL  P+ R + L DFGASFFY
Sbjct:   37 LHPALVLRGAQT-LAHGLASLHASGICHGDVYAHNILVSPDRRWMRLGDFGASFFY 91
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BLAST of mRNA_P-wetherbeei_contig6133.1.1 vs. uniprot
Match: A0A8J9S5V3_9CHLO (Probable leucine-rich repeat-containing protein 7 at N-terminal half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9S5V3_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 5.550e-8
Identity = 33/49 (67.35%), Postives = 37/49 (75.51%), Query Frame = 3 
Query:  294 LC*VARALEYLHARGVCHGDVYAHNILSDPEGRNVVLVDFGASFFYPTG 440
            LC VA AL+YLHA  +CHGDVYAHNIL D EG    L+D+GASFFY  G
Sbjct:  354 LC-VASALQYLHAHCICHGDVYAHNILVDNEGH-ATLLDYGASFFYKPG 400
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BLAST of mRNA_P-wetherbeei_contig6133.1.1 vs. uniprot
Match: D8TI68_VOLCA (Protein kinase domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TI68_VOLCA)

HSP 1 Score: 65.9 bits (159), Expect = 7.910e-8
Identity = 34/54 (62.96%), Postives = 37/54 (68.52%), Query Frame = 3 
Query:  270 PSRVLAFPLC*VARALEYLHARGVCHGDVYAHNILSDPEGRNVVLVDFGASFFY 431
            P R L   +  VA AL YLHA G+CHGDVYAHN+L D E  NV L DFGASF Y
Sbjct:  391 PHRALLLAVA-VADALAYLHAAGICHGDVYAHNVLMD-EDENVTLCDFGASFSY 442
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BLAST of mRNA_P-wetherbeei_contig6133.1.1 vs. uniprot
Match: A0A2V0PGL4_9CHLO (Protein kinase domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PGL4_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 8.130e-8
Identity = 30/43 (69.77%), Postives = 32/43 (74.42%), Query Frame = 3 
Query:  303 VARALEYLHARGVCHGDVYAHNILSDPEGRNVVLVDFGASFFY 431
            +  AL YLHAR VCHGDVYAHNIL  P+ R  VL DFGASF Y
Sbjct:  423 IGDALAYLHARRVCHGDVYAHNILYCPDSRRAVLCDFGASFCY 465
[Close]
BLAST of mRNA_P-wetherbeei_contig6133.1.1 vs. uniprot
Match: A0A7S4D539_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D539_HETAK)

HSP 1 Score: 65.1 bits (157), Expect = 1.190e-7
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 3 
Query:  213 AAPPFGSV*QPSAPPPYIH-PSRVLAFPLC*VARALEYLHARGVCHGDVYAHNILSDPEGRNVVLVDFGASFFYP--TGAPE 449
            A P   +V + + P P  H  +R     L  VA  LE+LHA+G+ HGDVYAHN+L D      VL DFGA+F YP   GAP+
Sbjct:  335 APPSLATVTRDTFPAPRAHLTARAALEALRGVAAGLEFLHAQGLAHGDVYAHNVLLDARTGEAVLADFGAAFPYPKEAGAPD 416
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6133.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0B3_9PHAE4.650e-1151.35Protein kinase domain-containing protein n=1 Tax=E... [more]
A0A7S1SSS3_9CHLO1.030e-1069.77Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
D7FJA1_ECTSI1.510e-958.06Putative Leucine Rich Repeat Protein Kinase n=1 Ta... [more]
A0A7S0M893_9CRYP3.480e-857.14Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A0D2MRW2_9CHLO3.760e-862.00Leucine-rich repeat protein lrrA n=1 Tax=Monoraphi... [more]
A0A7S4PR45_9CRYP3.820e-857.14Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A8J9S5V3_9CHLO5.550e-867.35Probable leucine-rich repeat-containing protein 7 ... [more]
D8TI68_VOLCA7.910e-862.96Protein kinase domain-containing protein n=1 Tax=V... [more]
A0A2V0PGL4_9CHLO8.130e-869.77Protein kinase domain-containing protein n=1 Tax=R... [more]
A0A7S4D539_HETAK1.190e-746.34Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6133contigP-wetherbeei_contig6133:2..1893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1409
Hectar predicted targeting categoryother localisation
Exons3
Cds size363
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186891.0988393-UTR-P-wetherbeei_contig6133:1..5051683186891.0988393-UTR-P-wetherbeei_contig6133:1..505Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6133 2..505 +
1683186891.1410966-UTR-P-wetherbeei_contig6133:1351..18931683186891.1410966-UTR-P-wetherbeei_contig6133:1351..1893Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6133 1352..1893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186891.1094842-CDS-P-wetherbeei_contig6133:505..5981683186891.1094842-CDS-P-wetherbeei_contig6133:505..598Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6133 506..598 +
1683186891.120142-CDS-P-wetherbeei_contig6133:645..8391683186891.120142-CDS-P-wetherbeei_contig6133:645..839Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6133 646..839 +
1683186891.1317666-CDS-P-wetherbeei_contig6133:1275..13511683186891.1317666-CDS-P-wetherbeei_contig6133:1275..1351Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6133 1276..1351 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6133.1.1prot_P-wetherbeei_contig6133.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6133 506..1351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6133.1.1

>prot_P-wetherbeei_contig6133.1.1 ID=prot_P-wetherbeei_contig6133.1.1|Name=mRNA_P-wetherbeei_contig6133.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=121bp
MGLPPGEGGRAGRPAAAAPAAAAAVGAATVPPPPGLGLRLNFEAVEVRAF
GLLMRDLAARARGLDWVEQDLVGRCCAPDAGGRPTFTEIANQLEAELLQM
YPQTPEADSKASGHTHFFGA*
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mRNA from alignment at P-wetherbeei_contig6133:2..1893+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6133.1.1 ID=mRNA_P-wetherbeei_contig6133.1.1|Name=mRNA_P-wetherbeei_contig6133.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1892bp|location=Sequence derived from alignment at P-wetherbeei_contig6133:2..1893+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCGGTTCCGGTCACGGTTCGTGCTCAGCGTCGGCATGCAGGTGCCTGT
GAATGATGGTGGGAATCTGCTGCTGGCGGTGGCGGCTTTGTTGACCTAGT
CAGAGTCTCATGCTTCTTGCGCCCTTTGTTCTCTGGTTGATTTCTAAGGC
AGTCAGCAGACAAGGCAGCCGCAGCATGGCGTGGACGTCATAGGGCTCCA
AAGTATCGATGCGCAGCGCCACCATTCGGTTCCGTCTGACAGCCTTCTGC
TCCACCTCCTTACATCCACCCGTCGCGGGTACTTGCCTTTCCCCTCTGCT
AGGTGGCGCGCGCCCTGGAGTACCTGCACGCCCGGGGCGTCTGCCACGGC
GACGTCTACGCCCACAACATCCTCTCCGACCCGGAGGGCCGCAACGTCGT
GCTCGTCGACTTCGGCGCCTCCTTCTTCTACCCCACGGGCGCTCCCGAGC
TCTGCGGCGGCGAAAATAACATCGGCGGCGGAAACGGTGGCAACGGCTGG
GAGGATGGGGCTGCCGCCGGGGGAGGGGGGGCGTGCCGGTCGACCAGCGG
CGGCGGCGCCAGCAGCCGCAGCCGCAGTTGGAGCGGCAACAGTGCCTCCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGGGTCGGGGTCGGCGCCGCCGCCG
CCGGGGCTGGGCCTGCGGCTCAATTTTGAAGCCGTGGAGGTGCGGGCATT
CGGCCTGCTGATGCGGGACCTGGCGGCGCGGGCGCGGGGGCTGGACTGGG
TGGAGCAGGACCTCGTCGGACGGTGCTGCGCGCCGGACGCTGGCGGCCGC
CCGACCTTCACGGAGATTGCCAACCAGCTCGAGGCGGAGTGAGTCATTGG
ATTTTATTGCCCATAATTCGTTGGGTCCTCGCGTTTCTTTGTTTTCCGCC
TTCTTCTTGTAGGACAGGTCGCCGTCTCCTCCTTTTTCGATACGGCAGCG
GCGTGCTACTGCCAGAAACGGTGATGGGTTAGGACTGGTGGATTGATTGT
TACAGAGTGCTGCCGCTATGGTTTTGGGCGGTGTGAAGTCTCGTGTTTTC
GTAGCATGGTCAGCTATTGCGCTGCCGGCCGTCACGTGGTTAGATCGTGC
TGGCACTGGCTGCAGCGCTGCGCTGTTTTTTTTGGTGAGGATGAACCGTC
CGTGTCCCTCCTTCAGCCAAGCACGTGCGCAACCGCCGCGGACTCCATGA
ACACTGACCACCATTGGAAGCGCCCGATTCGCTGTCCTTTTTCCGCCTTT
TTCGGCCGCCGCCATCATGCGCAGGCTCCTCCAAATGTACCCGCAAACTC
CCGAGGCGGACAGCAAGGCCTCGGGACACACACATTTCTTCGGCGCCTGA
GGCCGGCTTGACGTCCGTTACGGCGGTAGCGTTTGTCGGCGGCGCGTCTC
TGCGCGGCAGTTACGACTGTGATCCGGTCACTATTGGTGGGCCCCGCATG
GGGCTGTTATGGCCGGCGGCAGTGGCATTAGAGGCCAGCGGCGTCTCGGG
GAGCATTTGTGGCTGCAAGGATCATGAAGTCGCGTGCGCGTGCGAACTTA
AGGGGCAGGTATTAGCGCTGCAGACTCGGTGTCTGCGCTTTTATGTGGAC
TAGAAGAAGTGGGTTTCGTGTTTGTGTGTTCGCTTGTTTGGGCGTGTTGT
GTCTGTGCCCCGAGCCATCCTCGAAAGCTGACTGTGGCTTCCCAATCTCT
GGATCGCCTTCTACATTGTGCCACCGGGGGTTGGGCGGTGGCAGTGGATG
ATTTCCCTCGTCGCGGCCGCCGGTGCAGCGTTGACAACAGTGGCGAAGAG
GGGCGGGCGCTGGCTCTTGAGCGCTAATTTTGATTAGATGGATTGGGACT
AAAGCATATTGGAAAAGGAAGGAGGGAGATTTTTTCCAGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6133:2..1893+

>mRNA_P-wetherbeei_contig6133.1.1 ID=mRNA_P-wetherbeei_contig6133.1.1|Name=mRNA_P-wetherbeei_contig6133.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=363bp|location=Sequence derived from alignment at P-wetherbeei_contig6133:2..1893+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGCTGCCGCCGGGGGAGGGGGGGCGTGCCGGTCGACCAGCGGCGGC
GGCGCCAGCAGCCGCAGCCGCAGTTGGAGCGGCAACAGTGCCTCCGCCGC
CGGGGCTGGGCCTGCGGCTCAATTTTGAAGCCGTGGAGGTGCGGGCATTC
GGCCTGCTGATGCGGGACCTGGCGGCGCGGGCGCGGGGGCTGGACTGGGT
GGAGCAGGACCTCGTCGGACGGTGCTGCGCGCCGGACGCTGGCGGCCGCC
CGACCTTCACGGAGATTGCCAACCAGCTCGAGGCGGAGCTCCTCCAAATG
TACCCGCAAACTCCCGAGGCGGACAGCAAGGCCTCGGGACACACACATTT
CTTCGGCGCCTGA
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