mRNA_P-wetherbeei_contig6131.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6131.1.1
Unique NamemRNA_P-wetherbeei_contig6131.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6131.1.1 vs. uniprot
Match: A0A7S1BQC5_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BQC5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.460e-13
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    4 PTVLVDAYNIIGFWPKLKKRMDGNRLGEARDMLLDEVTELAHMKGWAIKLIYGAYNRE 177
            PTV+VDAYN+IG WP+L+KRM  N   EAR MLLD + E+A MKGW I+ ++ A  R+
Sbjct:  204 PTVIVDAYNVIGAWPRLQKRMRQNLPHEARRMLLDHLAEVAAMKGWTIECVFDAAGRK 261
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BLAST of mRNA_P-wetherbeei_contig6131.1.1 vs. uniprot
Match: A0A7S1BN99_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BN99_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.920e-13
Identity = 33/58 (56.90%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    4 PTVLVDAYNIIGFWPKLKKRMDGNRLGEARDMLLDEVTELAHMKGWAIKLIYGAYNRE 177
            PTV+VDAYN+IG WP+L+KRM  N   EAR MLLD + E+A MKGW I+ ++ A  R+
Sbjct:  204 PTVIVDAYNVIGAWPRLQKRMRQNLPHEARRMLLDHLAEVAAMKGWTIECVFDAAGRK 261
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BLAST of mRNA_P-wetherbeei_contig6131.1.1 vs. uniprot
Match: A0A7S2VZ88_9STRA (Hypothetical protein (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VZ88_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.690e-11
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    4 PTVLVDAYNIIGFWPKLKKRMDGNRLGEARDMLLDEVTELAHMKGWAIKLIYGAYNREGAG 186
            P VLVDAYNII  WP+LKK M    L  ARD+L+ ++ EL  +KGW I++++  Y R   G
Sbjct:    4 PLVLVDAYNIIYKWPRLKKWMSKGMLSRARDLLIYDLEELRALKGWRIEVVFDGYGRSTTG 64
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BLAST of mRNA_P-wetherbeei_contig6131.1.1 vs. uniprot
Match: A0A6T6LES0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A6T6LES0_9RHOD)

HSP 1 Score: 62.4 bits (150), Expect = 2.450e-10
Identity = 26/61 (42.62%), Postives = 38/61 (62.30%), Query Frame = 1 
Query:    4 PTVLVDAYNIIGFWPKLKKRMDGNRLGEARDMLLDEVTELAHMKGWAIKLIYGAYNREGAG 186
            P + +D YN+IG+WPKLKK+ D N L  AR +L +EV+    ++GW   ++Y A   E  G
Sbjct:    3 PILFIDGYNVIGYWPKLKKKRDKNDLCGARKLLNEEVSRYGSLRGWECVIVYDAMQSERKG 63
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BLAST of mRNA_P-wetherbeei_contig6131.1.1 vs. uniprot
Match: A0A5J4YVN1_PORPP (Protein YacP n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVN1_PORPP)

HSP 1 Score: 63.5 bits (153), Expect = 3.660e-10
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:    4 PTVLVDAYNIIGFWPKLKKRMDGNRLGEARDMLLDEVTELAHMKGWAIKLIYGAYNREGAGSTARQ 201
            P  L+D YN+IG+W KLKKR D   +  AR++LL EV++ A  +GW   ++Y AY    A +   Q
Sbjct:  163 PVCLIDGYNVIGYWKKLKKRRDAGDMEGARELLLVEVSQFAVYRGWQCVIVYDAYGNAKAQTEESQ 228
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BLAST of mRNA_P-wetherbeei_contig6131.1.1 vs. uniprot
Match: A0A7S3EL00_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EL00_9RHOD)

HSP 1 Score: 61.6 bits (148), Expect = 9.900e-10
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    4 PTVLVDAYNIIGFWPKLKKRMDGNRLGEARDMLLDEVTELAHMKGWAIKLIYGAYNREGAG 186
            P + +D YN+IG+WPKLKK+ D N L  AR +L +EV+  + ++GW   ++Y A   E  G
Sbjct:  121 PILFIDGYNVIGYWPKLKKKRDKNDLPGARKLLNEEVSLYSGLRGWECVIVYDAMQSERKG 181
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BLAST of mRNA_P-wetherbeei_contig6131.1.1 vs. uniprot
Match: A0A7S2UT12_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT12_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.430e-9
Identity = 28/62 (45.16%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    7 TVLVDAYNIIGFWPKLKKRM--DGNRLGEARDMLLDEVTELAHMKGWAIKLIYGAYNREGAG 186
            T+LVD YN+IG W KLKK+M  D N    +R+ML+ E+T L  M GW +++++ AY     G
Sbjct:   82 TMLVDGYNVIGAWAKLKKQMLRDENGFAHSREMLIQELTHLKSMSGWNVQVVFDAYKTVDQG 143
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BLAST of mRNA_P-wetherbeei_contig6131.1.1 vs. uniprot
Match: A0A7S3A5C7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A5C7_9RHOD)

HSP 1 Score: 61.6 bits (148), Expect = 1.560e-9
Identity = 26/61 (42.62%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    4 PTVLVDAYNIIGFWPKLKKRMDGNRLGEARDMLLDEVTELAHMKGWAIKLIYGAYNREGAG 186
            P + +D YN+IG+WPKLKK+ D N L  AR +L +EV+  + ++GW   ++Y A   E  G
Sbjct:  121 PILFIDGYNVIGYWPKLKKKRDKNDLPGARKLLNEEVSLYSGLRGWECVIVYDAMQSERKG 181
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BLAST of mRNA_P-wetherbeei_contig6131.1.1 vs. uniprot
Match: A0A7S3A5Y3_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A5Y3_9RHOD)

HSP 1 Score: 60.5 bits (145), Expect = 2.290e-9
Identity = 25/58 (43.10%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    4 PTVLVDAYNIIGFWPKLKKRMDGNRLGEARDMLLDEVTELAHMKGWAIKLIYGAYNRE 177
            P + +D YN+IG+WPKLKK+ D N L  AR +L +EV+  + ++GW   ++Y A   E
Sbjct:  121 PILFIDGYNVIGYWPKLKKKRDKNDLPGARKLLNEEVSLYSGLRGWECVIVYDAMQSE 178
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BLAST of mRNA_P-wetherbeei_contig6131.1.1 vs. uniprot
Match: K0SUA6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SUA6_THAOC)

HSP 1 Score: 59.7 bits (143), Expect = 9.390e-9
Identity = 25/61 (40.98%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    4 PTVLVDAYNIIGFWPKLKKRMDGNRLGEARDMLLDEVTELAHMKGWAIKLIYGAYNREGAG 186
            P VLVD YN++  WP+LKK+M    +  ARDML+ ++ +L  +KGW I+ ++  + R   G
Sbjct:  216 PLVLVDGYNVVYQWPRLKKQMLKGHIERARDMLIRDLEDLHGIKGWRIECVFDGFGRSTVG 276
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6131.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1BQC5_9STRA1.460e-1356.90Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1BN99_9STRA2.920e-1356.90Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2VZ88_9STRA1.690e-1149.18Hypothetical protein (Fragment) n=1 Tax=Eucampia a... [more]
A0A6T6LES0_9RHOD2.450e-1042.62Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A5J4YVN1_PORPP3.660e-1042.42Protein YacP n=1 Tax=Porphyridium purpureum TaxID=... [more]
A0A7S3EL00_9RHOD9.900e-1042.62Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S2UT12_9STRA1.430e-945.16Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3A5C7_9RHOD1.560e-942.62Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A7S3A5Y3_9RHOD2.290e-943.10Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
K0SUA6_THAOC9.390e-940.98Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6131contigP-wetherbeei_contig6131:8..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog159749.K0SUA6
PFAMsNYN_YacP
Model size210
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.54e-09
EggNOG OGsCOG3688@1|root,2QTU8@2759|Eukaryota,2XB81@2836|Bacillariophyta
DescriptionYacP-like NYN domain
Cds size210
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186890.929148-CDS-P-wetherbeei_contig6131:7..671683186890.929148-CDS-P-wetherbeei_contig6131:7..67Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6131 8..67 -
1683186890.9410057-CDS-P-wetherbeei_contig6131:357..5071683186890.9410057-CDS-P-wetherbeei_contig6131:357..507Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6131 358..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6131.1.1prot_P-wetherbeei_contig6131.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6131 8..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6131.1.1

>prot_P-wetherbeei_contig6131.1.1 ID=prot_P-wetherbeei_contig6131.1.1|Name=mRNA_P-wetherbeei_contig6131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=70bp
MPTVLVDAYNIIGFWPKLKKRMDGNRLGEARDMLLDEVTELAHMKGWAIK
LIYGAYNREGAGSTARQFEL
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mRNA from alignment at P-wetherbeei_contig6131:8..507-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6131.1.1 ID=mRNA_P-wetherbeei_contig6131.1.1|Name=mRNA_P-wetherbeei_contig6131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=500bp|location=Sequence derived from alignment at P-wetherbeei_contig6131:8..507- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACGGTTCTCGTCGACGCGTACAACATCATCGGCTTCTGGCCCAA
GCTCAAAAAGCGGATGGATGGGAACCGACTCGGAGAGGCACGCGACATGC
TGCTGGACGAAGTGACGGAGCTCGCGCACATGAAAGGCTGGGCCATCAAG
GTCGGTTTTTCGCTTTCCTGTCAGTCTCTCGGTTGGCTTTTGGTCCACAG
TCGGTCGACTTTCGGTCAGGGTCTTGTTGGTTTCGACTGCGGTTCGATTG
GTCGGCATCAGCATAATGACAGCTTCACGGTGCTCTCAGGCAGGTTTGTA
AATAGCTGTGATGCATATGTAAATGCGGTTTCTATTGTTGGTAGCCACGG
CTGTGAGAGCCTCAAACAGCAGCAAGTGTGAAACGCGACGCTCCCTTTTG
CTTCTCTTGCTTGTCCCGGCCGATCGGTCCCTCCGTGCAGCTGATTTACG
GCGCATACAACCGCGAGGGCGCGGGCAGCACCGCGAGGCAGTTCGAGCTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6131:8..507-

>mRNA_P-wetherbeei_contig6131.1.1 ID=mRNA_P-wetherbeei_contig6131.1.1|Name=mRNA_P-wetherbeei_contig6131.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=210bp|location=Sequence derived from alignment at P-wetherbeei_contig6131:8..507- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACGGTTCTCGTCGACGCGTACAACATCATCGGCTTCTGGCCCAA
GCTCAAAAAGCGGATGGATGGGAACCGACTCGGAGAGGCACGCGACATGC
TGCTGGACGAAGTGACGGAGCTCGCGCACATGAAAGGCTGGGCCATCAAG
CTGATTTACGGCGCATACAACCGCGAGGGCGCGGGCAGCACCGCGAGGCA
GTTCGAGCTG
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