mRNA_P-wetherbeei_contig613.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig613.1.1
Unique NamemRNA_P-wetherbeei_contig613.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig613.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig613contigP-wetherbeei_contig613:179..1023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size822
Hectar predicted targeting categoryother localisation
Exons2
Cds size681
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186890.6257718-UTR-P-wetherbeei_contig613:178..2101683186890.6257718-UTR-P-wetherbeei_contig613:178..210Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig613 179..210 -
1683186890.6553366-UTR-P-wetherbeei_contig613:914..10231683186890.6553366-UTR-P-wetherbeei_contig613:914..1023Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig613 915..1023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186890.6364815-CDS-P-wetherbeei_contig613:210..4781683186890.6364815-CDS-P-wetherbeei_contig613:210..478Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig613 211..478 -
1683186890.645876-CDS-P-wetherbeei_contig613:501..9141683186890.645876-CDS-P-wetherbeei_contig613:501..914Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig613 502..914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig613.1.1prot_P-wetherbeei_contig613.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig613 211..914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig613.1.1

>prot_P-wetherbeei_contig613.1.1 ID=prot_P-wetherbeei_contig613.1.1|Name=mRNA_P-wetherbeei_contig613.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp
MQKNRPIFSPSARDAYYKKGSGPERALAPILITSPRFDSTSRRRVHPAPQ
ESPANSDVAARQLLRGSPRHQSLSTPPLRQEGAGGRCAGGDTLALPRHLD
MTCLNSERHPAEAASGSTRSGKHESGGICLLKDSAGAMRCSERREPWHHF
QCQLSGLLRGSSAARQTRVCRRSQRRRRRRLWRRDAGVVSLRRAGGSRQG
RNAEAHRALARPHPPEEARCRRRSWG*
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mRNA from alignment at P-wetherbeei_contig613:179..1023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig613.1.1 ID=mRNA_P-wetherbeei_contig613.1.1|Name=mRNA_P-wetherbeei_contig613.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=845bp|location=Sequence derived from alignment at P-wetherbeei_contig613:179..1023- (Phaeothamnion wetherbeei SAG_119_79)
CAAGGGAGATAGAGAGACCAAGGGGGTGAGAGGAAAAATAAATGAGAAAC
GAGGAAAAGAGTCGAGCATCCTTGACGTCCCCAAGTTCGCGACTCGTCTG
TTGAAAAGTATGCAGAAAAACAGACCCATTTTCTCCCCATCCGCGAGAGA
TGCGTATTATAAGAAGGGATCAGGCCCAGAGAGAGCCCTGGCTCCCATCC
TGATCACGTCGCCACGGTTCGATTCGACCTCGCGTCGACGGGTGCACCCA
GCGCCGCAGGAGAGCCCGGCAAACAGTGATGTGGCGGCGCGCCAGCTTCT
ACGAGGCTCCCCTCGGCATCAGTCCTTGTCGACTCCGCCGCTGCGGCAGG
AAGGTGCAGGCGGGCGCTGTGCAGGTGGCGACACCTTGGCGTTGCCCAGG
CACCTTGACATGACATGTTTGAATTCAGAGCGCCACCCGGCGGAGGCTGC
CAGCGGTAGTACGCGCAGCGGAAAGCACGAGAGCGGCGGCATCTGCCTCT
TGAAAGACAGCGCAGGCGCCATCTCGTCTCCGGGTGGCCTTCGACGCGTT
GCTCAGAGCGGCGGGAACCATGGCACCACTTCCAGTGTCAGCTTTCTGGG
CTCCTCCGCGGCAGTAGTGCCGCCCGACAAACACGCGTCTGCCGCCGGAG
TCAACGGCGGCGACGGCGACGCCTGTGGCGGCGGGATGCTGGCGTCGTAT
CTCTGCGGCGAGCCGGGGGCAGTCGACAGGGTAGAAATGCTGAAGCACAT
CGAGCTCTTGCGCGACCTCATCCTCCAGAGGAAGCCCGCTGCCGCCGCCG
CAGCTGGGGCTAGCGGCGGCGCCGGCGGCGCAAGCGTTCCGCTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig613:179..1023-

>mRNA_P-wetherbeei_contig613.1.1 ID=mRNA_P-wetherbeei_contig613.1.1|Name=mRNA_P-wetherbeei_contig613.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig613:179..1023- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGAAAAACAGACCCATTTTCTCCCCATCCGCGAGAGATGCGTATTA
TAAGAAGGGATCAGGCCCAGAGAGAGCCCTGGCTCCCATCCTGATCACGT
CGCCACGGTTCGATTCGACCTCGCGTCGACGGGTGCACCCAGCGCCGCAG
GAGAGCCCGGCAAACAGTGATGTGGCGGCGCGCCAGCTTCTACGAGGCTC
CCCTCGGCATCAGTCCTTGTCGACTCCGCCGCTGCGGCAGGAAGGTGCAG
GCGGGCGCTGTGCAGGTGGCGACACCTTGGCGTTGCCCAGGCACCTTGAC
ATGACATGTTTGAATTCAGAGCGCCACCCGGCGGAGGCTGCCAGCGGTAG
TACGCGCAGCGGAAAGCACGAGAGCGGCGGCATCTGCCTCTTGAAAGACA
GCGCAGGCGCCATGCGTTGCTCAGAGCGGCGGGAACCATGGCACCACTTC
CAGTGTCAGCTTTCTGGGCTCCTCCGCGGCAGTAGTGCCGCCCGACAAAC
ACGCGTCTGCCGCCGGAGTCAACGGCGGCGACGGCGACGCCTGTGGCGGC
GGGATGCTGGCGTCGTATCTCTGCGGCGAGCCGGGGGCAGTCGACAGGGT
AGAAATGCTGAAGCACATCGAGCTCTTGCGCGACCTCATCCTCCAGAGGA
AGCCCGCTGCCGCCGCCGCAGCTGGGGCTAG
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