mRNA_P-wetherbeei_contig6127.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6127.4.1
Unique NamemRNA_P-wetherbeei_contig6127.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6127.4.1 vs. uniprot
Match: A0A835ZDA5_9STRA (Zinc/iron permease n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDA5_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 1.330e-19
Identity = 94/176 (53.41%), Postives = 113/176 (64.20%), Query Frame = 1
Query:    7 DVWKNAFLSTAAISVLPTMVLPFVPASAGKPGSGLQKCMLAFASGSMLGDVFLHLLPHLNEHYAAGDGGHHHXXXXXXXXXXXXDXXXXXXXXXXXXXXDHGAFHGVHHDAAMLSQPHAISRCPHHRALAAGK-GAWADARTAV----AEQQLGLLILAGFMFFFVCERLIHSFAG 519
              W++A  +TAAIS+LPT+VLPF+PASA KPGSG  K MLAFA G MLGDVFLHLLPHL    AA   G H XXXXXXXXXXXX XXXXXXXXXXXXXX        H      +Q  +++R     +LA G  G   D+   +     E  +G+ +L GF+FFF+ ERLI +  G
Sbjct:   10 QAWRHALAATAAISILPTLVLPFIPASASKPGSGPLKIMLAFAVGGMLGDVFLHLLPHL---MAAHAHGIHEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDAHAAEGFGAQ--SVARF---FSLADGSVGVEVDSAQVMELLTGELSVGMTVLGGFLFFFLAERLIRAATG 177          
BLAST of mRNA_P-wetherbeei_contig6127.4.1 vs. uniprot
Match: D7FGP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGP3_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.820e-17
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 MDDVWKNAFLSTAAISVLPTMVLPFVPASAGKPGSGLQKCMLAFASGSMLGDVFLHLLPHL 183
            M   W++A ++T  IS +PTMVLPF+P SA KPGS +Q+ +L FA G M+GDVFLHLLPHL
Sbjct:    1 MAHPWRDAAIATGLISSVPTMVLPFIPESATKPGSAVQRILLCFAVGGMMGDVFLHLLPHL 61          
BLAST of mRNA_P-wetherbeei_contig6127.4.1 vs. uniprot
Match: A0A6H5KFX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFX4_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 3.100e-17
Identity = 37/61 (60.66%), Postives = 47/61 (77.05%), Query Frame = 1
Query:    1 MDDVWKNAFLSTAAISVLPTMVLPFVPASAGKPGSGLQKCMLAFASGSMLGDVFLHLLPHL 183
            M   W++A ++T  IS +PTMVLPF+P SA KPGS +Q+ +L FA G M+GDVFLHLLPHL
Sbjct:    1 MAHPWRDAAIATGLISSVPTMVLPFIPESATKPGSAVQRILLCFAVGGMMGDVFLHLLPHL 61          
BLAST of mRNA_P-wetherbeei_contig6127.4.1 vs. uniprot
Match: A0A7S2UZX1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZX1_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.150e-11
Identity = 36/68 (52.94%), Postives = 46/68 (67.65%), Query Frame = 1
Query:   19 NAFLSTAAISVLPTMVLPFVPASAGKPGSGLQKCMLAFASGSMLGDVFLHLLPHLNEHYAAGDGGHHH 222
            NAF +TA IS++PT+VLPFVP ++      L + +LAFA G +LGDVFLHL+PHL        GGH H
Sbjct:    9 NAFGATALISIVPTLVLPFVPLNSKNINGRLHRVLLAFAVGGLLGDVFLHLIPHLM------GGGHAH 70          
BLAST of mRNA_P-wetherbeei_contig6127.4.1 vs. uniprot
Match: W7TT21_9STRA (Zinc transporter n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TT21_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 4.820e-11
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = 1
Query:   13 WKNAFLSTAAISVLPTMVLPFVPASA---GKPG--SGLQKCMLAFASGSMLGDVFLHLLPHL---NEHYAAGDGGHHH 222
            W  AF +TA IS+ PT++LPF+P  +   G P     L + +L+FA+G +LG+VFLH LPHL   ++H+ +  G HHH
Sbjct:   73 WAKAFGATAVISIFPTLILPFIPLVSFVDGVPSLHEDLHRLLLSFATGGLLGEVFLHSLPHLLERHDHFGSSHGHHHH 150          
BLAST of mRNA_P-wetherbeei_contig6127.4.1 vs. uniprot
Match: A0A7R8X3S7_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X3S7_9CRUS)

HSP 1 Score: 68.2 bits (165), Expect = 2.560e-10
Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 1
Query:   10 VWKNAFLSTAAISVLPTMVLPFVPASAGKPGSGLQKCMLAFASGSMLGDVFLHLLPHLNEHYAAGDGGHHH 222
            +W  A  ST  IS+ P  +L F+P    K    L K +L+FASG +LGD FLHL+PH   H A  D  HHH
Sbjct:   10 LWLQAIGSTLVISIAPFFILFFIPLDNTKSSEPLLKILLSFASGGLLGDAFLHLIPHALMHKAETDSSHHH 80          
BLAST of mRNA_P-wetherbeei_contig6127.4.1 vs. uniprot
Match: A0A5B7FY43_PORTR (Zinc transporter Slc39a7 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7FY43_PORTR)

HSP 1 Score: 65.5 bits (158), Expect = 1.700e-9
Identity = 33/71 (46.48%), Postives = 41/71 (57.75%), Query Frame = 1
Query:    4 DDVWKNAFLSTAAISVLPTMVLPFVPASAGKPGSGLQKCMLAFASGSMLGDVFLHLLPHLNEHYAAGDGGH 216
            D VW  A ++T  IS+ P ++L F+P S GK      K  LAF SG +LGD FLHL+PH     A  DG H
Sbjct:   81 DSVWVEALVATLGISIAPYLILFFIPVSNGKEHEKKLKVFLAFTSGGLLGDAFLHLIPHAL--MAKADGSH 149          
BLAST of mRNA_P-wetherbeei_contig6127.4.1 vs. uniprot
Match: A0A8B7XW86_ACAPL (protein catecholamines up-like n=2 Tax=Valvatida TaxID=41166 RepID=A0A8B7XW86_ACAPL)

HSP 1 Score: 65.9 bits (159), Expect = 1.830e-9
Identity = 33/72 (45.83%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   13 WKNAFLSTAAISVLPTMVLPFVPASAGKPGS-GLQKCMLAFASGSMLGDVFLHLLPH-LNEHYAAGDGGHHH 222
            W +A  +T  IS  P ++L  +P   G+ G   L K +L+FASG +LGD FLHL+PH ++ H+  GDGG HH
Sbjct:   96 WGDAIGATLLISAAPFLILFVIPLDKGREGQEALLKVLLSFASGGLLGDAFLHLIPHAVSPHHHHGDGGEHH 167          
BLAST of mRNA_P-wetherbeei_contig6127.4.1 vs. uniprot
Match: A0A085MJ95_9BILA (Uncharacterized protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085MJ95_9BILA)

HSP 1 Score: 65.5 bits (158), Expect = 2.700e-9
Identity = 37/73 (50.68%), Postives = 46/73 (63.01%), Query Frame = 1
Query:   10 VWKNAFLSTAAISVLPTMVLPFVPASAG--KPGSGLQKCMLAFASGSMLGDVFLHLLPHLNEHYAAGDGGHHH 222
            +W +A  ST  ISV P ++L F+P S G  +P   L K +LAFASGS+LGD FLHL+PH    Y A  G  HH
Sbjct:  204 LWLSAIGSTILISVAPFLLLFFIPLSGGAVEPNQPLLKTLLAFASGSLLGDAFLHLIPHA---YMARAGHSHH 273          
BLAST of mRNA_P-wetherbeei_contig6127.4.1 vs. uniprot
Match: UPI001B888889 (protein catecholamines up-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B888889)

HSP 1 Score: 65.1 bits (157), Expect = 3.610e-9
Identity = 31/72 (43.06%), Postives = 43/72 (59.72%), Query Frame = 1
Query:    7 DVWKNAFLSTAAISVLPTMVLPFVPASAGKPGSGLQKCMLAFASGSMLGDVFLHLLPHLNEHYAAGDGGHHH 222
             +W  A  +TA ISV P ++L F+P         L K +L+FASG +LGD FLHL+PH    ++ G+ GH H
Sbjct:  166 SLWLQALGATAIISVSPIVILLFIPIEDSTDHQSLLKVLLSFASGGLLGDAFLHLIPHAVSPHSHGEDGHGH 237          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6127.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZDA5_9STRA1.330e-1953.41Zinc/iron permease n=1 Tax=Tribonema minus TaxID=3... [more]
D7FGP3_ECTSI1.820e-1760.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFX4_9PHAE3.100e-1760.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2UZX1_9STRA4.150e-1152.94Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TT21_9STRA4.820e-1144.87Zinc transporter n=2 Tax=Monodopsidaceae TaxID=425... [more]
A0A7R8X3S7_9CRUS2.560e-1046.48Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
A0A5B7FY43_PORTR1.700e-946.48Zinc transporter Slc39a7 n=1 Tax=Portunus trituber... [more]
A0A8B7XW86_ACAPL1.830e-945.83protein catecholamines up-like n=2 Tax=Valvatida T... [more]
A0A085MJ95_9BILA2.700e-950.68Uncharacterized protein n=1 Tax=Trichuris suis Tax... [more]
UPI001B8888893.610e-943.06protein catecholamines up-like n=1 Tax=Gigantopelt... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6127contigP-wetherbeei_contig6127:2301..3061 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog6500.XP_005113071.1
Preferred nameSLC39A7
PFAMsZip
Model size519
Max annot lvl33208|Metazoa
KEGG koko:K14713
KEGG TC2.A.5.4.3,2.A.5.4.4,2.A.5.4.7
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000041,GO:0001667,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0005215,GO:0005385,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005801,GO:0006810,GO:0006811,GO:0006812,GO:0006829,GO:0006873,GO:0006875,GO:0006882,GO:0006928,GO:0006950,GO:0007276,GO:0007281,GO:0007292,GO:0007297,GO:0007298,GO:0008021,GO:0008150,GO:0008324,GO:0009636,GO:0009888,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010312,GO:0010631,GO:0010632,GO:0012505,GO:0015075,GO:0015318,GO:0016020,GO:0016477,GO:0019222,GO:0019725,GO:0019953,GO:0022412,GO:0022414,GO:0022857,GO:0022890,GO:0030001,GO:0030003,GO:0030133,GO:0030154,GO:0030234,GO:0030334,GO:0030424,GO:0030707,GO:0030855,GO:0031090,GO:0031323,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0033106,GO:0033238,GO:0034220,GO:0036477,GO:0040011,GO:0040012,GO:0042069,GO:0042175,GO:0042221,GO:0042592,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044456,GO:0044464,GO:0044703,GO:0045202,GO:0046873,GO:0046915,GO:0046916,GO:0048468,GO:0048471,GO:0048477,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0048878,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051270,GO:0051674,GO:0051704,GO:0055065,GO:0055069,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060429,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070382,GO:0070838,GO:0071577,GO:0072503,GO:0072507,GO:0072509,GO:0072511,GO:0080090,GO:0090130,GO:0090132,GO:0097038,GO:0097458,GO:0097501,GO:0097708,GO:0098588,GO:0098655,GO:0098660,GO:0098662,GO:0098754,GO:0098771,GO:0098772,GO:0098793,GO:0098827,GO:0099503,GO:0120025,GO:1990359,GO:2000026,GO:2000145,GO:2000274
Exons2
Evalue1.96e-09
EggNOG OGsCOG0428@1|root,KOG2693@2759|Eukaryota,38FZT@33154|Opisthokonta,3BEK2@33208|Metazoa,3CS6P@33213|Bilateria
Ec32 ortholog descriptionZinc/iron permease
Ec32 orthologEc-12_005310.1
Descriptionsolute carrier family 39 (zinc transporter), member 7
Cds size519
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186890.5032306-CDS-P-wetherbeei_contig6127:2300..24871683186890.5032306-CDS-P-wetherbeei_contig6127:2300..2487Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6127 2301..2487 +
1683186890.5154045-CDS-P-wetherbeei_contig6127:2729..30611683186890.5154045-CDS-P-wetherbeei_contig6127:2729..3061Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6127 2730..3061 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6127.4.1prot_P-wetherbeei_contig6127.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6127 2301..3061 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6127.4.1

>prot_P-wetherbeei_contig6127.4.1 ID=prot_P-wetherbeei_contig6127.4.1|Name=mRNA_P-wetherbeei_contig6127.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=173bp
MDDVWKNAFLSTAAISVLPTMVLPFVPASAGKPGSGLQKCMLAFASGSML
GDVFLHLLPHLNEHYAAGDGGHHHHQHGDHDDHGDHDHHHHDHDHHDHSD
HDHGAFHGVHHDAAMLSQPHAISRCPHHRALAAGKGAWADARTAVAEQQL
GLLILAGFMFFFVCERLIHSFAG
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mRNA from alignment at P-wetherbeei_contig6127:2301..3061+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6127.4.1 ID=mRNA_P-wetherbeei_contig6127.4.1|Name=mRNA_P-wetherbeei_contig6127.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=761bp|location=Sequence derived from alignment at P-wetherbeei_contig6127:2301..3061+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGATGTGTGGAAGAATGCCTTTCTCTCGACCGCCGCGATCTCCGT CCTACCGACAATGGTCCTGCCCTTCGTGCCGGCGAGCGCAGGGAAGCCAG GAAGCGGCCTGCAGAAGTGCATGTTAGCCTTTGCTAGCGGCTCCATGCTC GGCGACGTCTTCCTCCATTTGCTTCCTCACCTCAACGGTAAGTGCAATCT TCAGTCATCCTTGCCCGGATGAATCGGGCTCAAAGCTCATTTCTTGCAGA GCCAAGAGTCATCGCACGAAAAATATGTTTTCGCCGTCGAATTGGAGGTG CTAGTGCCGTTACCTGCACCGCCAAGAGCAGCCACGTCGGAAACAGACCC CATCATCCCCACAGGCCCCCTTTGTTGAATCAATTTGATCACTTCTTCTT GCTGATCTTCAATGACGCCGCCCGAGCAGAGCACTATGCCGCCGGTGACG GCGGCCATCATCATCACCAGCACGGCGACCACGACGACCACGGTGATCAC GACCATCACCACCACGATCACGATCATCATGATCATTCGGATCATGACCA CGGCGCTTTCCACGGGGTTCACCACGACGCAGCGATGCTCTCCCAGCCGC ACGCCATCTCCCGGTGCCCGCATCACCGGGCCCTCGCCGCCGGGAAGGGC GCCTGGGCAGACGCGCGGACTGCCGTAGCGGAACAGCAGCTCGGCCTGCT CATCCTGGCGGGCTTCATGTTCTTCTTCGTTTGCGAGCGCCTCATCCACT CCTTCGCCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6127:2301..3061+

>mRNA_P-wetherbeei_contig6127.4.1 ID=mRNA_P-wetherbeei_contig6127.4.1|Name=mRNA_P-wetherbeei_contig6127.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=519bp|location=Sequence derived from alignment at P-wetherbeei_contig6127:2301..3061+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGATGTGTGGAAGAATGCCTTTCTCTCGACCGCCGCGATCTCCGT
CCTACCGACAATGGTCCTGCCCTTCGTGCCGGCGAGCGCAGGGAAGCCAG
GAAGCGGCCTGCAGAAGTGCATGTTAGCCTTTGCTAGCGGCTCCATGCTC
GGCGACGTCTTCCTCCATTTGCTTCCTCACCTCAACGAGCACTATGCCGC
CGGTGACGGCGGCCATCATCATCACCAGCACGGCGACCACGACGACCACG
GTGATCACGACCATCACCACCACGATCACGATCATCATGATCATTCGGAT
CATGACCACGGCGCTTTCCACGGGGTTCACCACGACGCAGCGATGCTCTC
CCAGCCGCACGCCATCTCCCGGTGCCCGCATCACCGGGCCCTCGCCGCCG
GGAAGGGCGCCTGGGCAGACGCGCGGACTGCCGTAGCGGAACAGCAGCTC
GGCCTGCTCATCCTGGCGGGCTTCATGTTCTTCTTCGTTTGCGAGCGCCT
CATCCACTCCTTCGCCGGG
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