mRNA_P-wetherbeei_contig6125.7.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6125.7.1
Unique NamemRNA_P-wetherbeei_contig6125.7.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6125.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6125contigP-wetherbeei_contig6125:2735..3054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size171
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186890.1977084-CDS-P-wetherbeei_contig6125:2734..28191683186890.1977084-CDS-P-wetherbeei_contig6125:2734..2819Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6125 2735..2819 -
1683186890.206087-CDS-P-wetherbeei_contig6125:2968..30241683186890.206087-CDS-P-wetherbeei_contig6125:2968..3024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6125 2969..3024 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186890.2136054-UTR-P-wetherbeei_contig6125:3024..30541683186890.2136054-UTR-P-wetherbeei_contig6125:3024..3054Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6125 3025..3054 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6125.7.1prot_P-wetherbeei_contig6125.7.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6125 2735..3024 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6125.7.1

>prot_P-wetherbeei_contig6125.7.1 ID=prot_P-wetherbeei_contig6125.7.1|Name=mRNA_P-wetherbeei_contig6125.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
MGATWRLSSATTGLFATGSSISAKAMAQLYQSNDEISINKKWLDQQM
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mRNA from alignment at P-wetherbeei_contig6125:2735..3054-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6125.7.1 ID=mRNA_P-wetherbeei_contig6125.7.1|Name=mRNA_P-wetherbeei_contig6125.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=320bp|location=Sequence derived from alignment at P-wetherbeei_contig6125:2735..3054- (Phaeothamnion wetherbeei SAG_119_79)
GAAGGGCCGTTCGAAAGGCTAGGACGGGAAATGGGGGCGACATGGCGACT
TTCATCTGCGACAACGGGGCTCTTTGCAACTGGCAGGTGCGCGGCAGCAA
GCGCGCAGACGGTTCGTGGCGTGTTTCGAAAGGCAAAACGCACCTCATCC
ATGCGAATTGTACCCCGGTCGCAAGGCCGTCCGCCAAGCTGCTGGCCAAC
GTTGCATCTGTCAGGGGCGCCGTGAATGCCAACAGTTCCATTTCGGCCAA
AGCCATGGCCCAGCTATATCAGAGCAACGACGAGATTTCCATCAACAAGA
AGTGGCTCGACCAGCAGATG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6125:2735..3054-

>mRNA_P-wetherbeei_contig6125.7.1 ID=mRNA_P-wetherbeei_contig6125.7.1|Name=mRNA_P-wetherbeei_contig6125.7.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig6125:2735..3054- (Phaeothamnion wetherbeei SAG_119_79)
ATGGGGGCGACATGGCGACTTTCATCTGCGACAACGGGGCTCTTTGCAAC
TGGCAGTTCCATTTCGGCCAAAGCCATGGCCCAGCTATATCAGAGCAACG
ACGAGATTTCCATCAACAAGAAGTGGCTCGACCAGCAGATG
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