mRNA_P-wetherbeei_contig6104.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6104.1.1
Unique NamemRNA_P-wetherbeei_contig6104.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6104.1.1 vs. uniprot
Match: A0A835YQ98_9STRA (Endoplasmic reticulum-golgi intermediate compartment-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ98_9STRA)

HSP 1 Score: 199 bits (505), Expect = 1.310e-59
Identity = 92/130 (70.77%), Postives = 115/130 (88.46%), Query Frame = 1
Query:    1 MAPPLKNFDFYRKIPMDLTESTLQGSVLSFCALAFMLLLFLCELWAFLSPEVYSTVMIDSNKDTKLRINFNVTMLELSCDYASVDVLDVLGTNRVNVTKNIVKWHTDSEGRRMEFHGRNREQEDLVHDDH 390
            MA  ++ FDFYRKIPMDLTE+T+QG+++S  A+ FM +LF+CEL AFL PE+YSTVM+D+N+D+KLRINFNVTML L C+YA++DVLDVLGTNRVN+TKNI+KWHTD  GR++EFHGRNREQED+ HD H
Sbjct:    1 MAGGIRTFDFYRKIPMDLTETTVQGAIMSAVAMLFMFVLFICELQAFLRPEIYSTVMLDTNRDSKLRINFNVTMLALPCEYATIDVLDVLGTNRVNITKNIIKWHTDERGRKVEFHGRNREQEDVQHDTH 130          
BLAST of mRNA_P-wetherbeei_contig6104.1.1 vs. uniprot
Match: D8LEE9_ECTSI (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEE9_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 1.970e-57
Identity = 94/128 (73.44%), Postives = 112/128 (87.50%), Query Frame = 1
Query:    7 PPLKNFDFYRKIPMDLTESTLQGSVLSFCALAFMLLLFLCELWAFLSPEVYSTVMIDSNKDTKLRINFNVTMLELSCDYASVDVLDVLGTNRVNVTKNIVKWHTDSEGRRMEFHGRNREQEDLVHDDH 390
            P +K FDFYRKIP+DLTE+TLQG+V+S CAL  ML+LFLCEL AFL+PEVY+TV IDSN+D+KLRINFN+TML L CDYASVDVLD+LGTN+VN+T+NIVKWHTD  G + EFHGRN+ QE + HDDH
Sbjct:    2 PTIKTFDFYRKIPLDLTETTLQGAVMSGCALFCMLILFLCELRAFLTPEVYTTVAIDSNQDSKLRINFNITMLALPCDYASVDVLDLLGTNKVNMTQNIVKWHTDENGVKREFHGRNKAQEMVKHDDH 129          
BLAST of mRNA_P-wetherbeei_contig6104.1.1 vs. uniprot
Match: A0A7S3JS36_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JS36_9STRA)

HSP 1 Score: 163 bits (412), Expect = 1.080e-45
Identity = 78/130 (60.00%), Postives = 99/130 (76.15%), Query Frame = 1
Query:    1 MAPPLKNFDFYRKIPMDLTESTLQGSVLSFCALAFMLLLFLCELWAFLSPEVYSTVMIDSNKDTKLRINFNVTMLELSCDYASVDVLDVLGTNRVNVTKNIVKWHTDSEGRRMEFHGRNREQEDLVHDDH 390
            M   +K  DF+RKIP DLTE+T  G+ LS CA  FML+LFL ELWAF+S  + + VM+D+N +T LRINFN+TM+EL CD+A+VDV+D+LGTN +NVTKN+ KW  D  G+RM F GRNREQ D+ HD H
Sbjct:    1 MGQGMKTVDFFRKIPTDLTEATALGAALSVCAGLFMLVLFLVELWAFMSTTIETGVMLDTNAETLLRINFNITMMELQCDFAAVDVVDILGTNSMNVTKNVEKWQLDENGKRMIFQGRNREQRDIAHDSH 130          
BLAST of mRNA_P-wetherbeei_contig6104.1.1 vs. uniprot
Match: A0A4D9CME8_9STRA (Thioredoxin domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CME8_9STRA)

HSP 1 Score: 156 bits (395), Expect = 7.200e-43
Identity = 74/126 (58.73%), Postives = 101/126 (80.16%), Query Frame = 1
Query:   13 LKNFDFYRKIPMDLTESTLQGSVLSFCALAFMLLLFLCELWAFLSPEVYSTVMIDSNKDTKLRINFNVTMLELSCDYASVDVLDVLGTNRVNVTKNIVKWHTDSEGRRMEFHGRNREQEDLVHDDH 390
            +K+FDFYRK+P+DLTE+T  G ++S  A+ FML LF+ EL +F++   +STV++D N+D ++RINFN+TML++ C++A+VDVLDVLGTN+ NVTKNI KW+ D   +R  F GRNREQ DLVHDDH
Sbjct:   60 IKSFDFYRKVPLDLTEATWHGGLVSILAILFMLSLFVVELSSFIASTTHSTVVVDFNRDQQIRINFNITMLDVPCEFATVDVLDVLGTNQQNVTKNIEKWNLDQNAQRRMFQGRNREQRDLVHDDH 185          
BLAST of mRNA_P-wetherbeei_contig6104.1.1 vs. uniprot
Match: A0A7S3ZRX9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRX9_9STRA)

HSP 1 Score: 152 bits (385), Expect = 8.030e-42
Identity = 77/126 (61.11%), Postives = 98/126 (77.78%), Query Frame = 1
Query:   13 LKNFDFYRKIPMDLTESTLQGSVLSFCALAFMLLLFLCELWAFLSPEVYSTVMIDSNKDTKLRINFNVTMLELSCDYASVDVLDVLGTNRVNVTKNIVKWHTDSEGRRMEFHGRNREQEDLVHDDH 390
            LK  DF+RKIP DLTE+T+ G+ LS  A  FM +LF+ EL+AFLS  V + VM+D+N DT LRINFNVTML+L CDYA+VDV+DVLGTN +NVTKN+ KW  D  G+RM F GRNREQ+ + +++H
Sbjct:    4 LKMMDFFRKIPADLTETTITGAALSVAACIFMGVLFIVELYAFLSTTVETGVMLDTNSDTLLRINFNVTMLDLQCDYAAVDVVDVLGTNSMNVTKNVEKWQLDEHGKRMIFQGRNREQKAISYEEH 129          
BLAST of mRNA_P-wetherbeei_contig6104.1.1 vs. uniprot
Match: A0A7S2GUZ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GUZ1_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.330e-40
Identity = 70/126 (55.56%), Postives = 92/126 (73.02%), Query Frame = 1
Query:   13 LKNFDFYRKIPMDLTESTLQGSVLSFCALAFMLLLFLCELWAFLSPEVYSTVMIDSNKDTKLRINFNVTMLELSCDYASVDVLDVLGTNRVNVTKNIVKWHTDSEGRRMEFHGRNREQEDLVHDDH 390
            LK  DFYRKIP D  + T  G+ LS CA  FML+LF  ELWAFL+    ++V++D+N DT+LRINFN+TM++L+CD+ SVDV DVLGTN  N+TKNI KW  D  G +  F GRN+E +++ HD+H
Sbjct:    7 LKVLDFYRKIPEDFQKQTAVGASLSICAGLFMLILFFVELWAFLATTTDTSVILDTNSDTQLRINFNITMMDLACDFVSVDVYDVLGTNTQNMTKNIEKWQLDENGVKRIFQGRNKEVKEISHDEH 132          
BLAST of mRNA_P-wetherbeei_contig6104.1.1 vs. uniprot
Match: A0A7S2RKA3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RKA3_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.080e-38
Identity = 75/131 (57.25%), Postives = 93/131 (70.99%), Query Frame = 1
Query:    1 MAPP-LKNFDFYRKIPMDLTESTLQGSVLSFCALAFMLLLFLCELWAFLSPEVYSTVMIDSNKDTKLRINFNVTMLELSCDYASVDVLDVLGTNRVNVTKNIVKWHTDSEGRRMEFHGRNREQEDLVHDDH 390
            MAP   K  DFYRKIP D  + T  G+ LS CA  FML+LF  EL+AFLS    ++V++D+N DT+LRINFN+T+++L CDYA VDV DVLGTN  N++KNI KW  D  G R  F GRNREQ+D+ HD H
Sbjct:    1 MAPSGFKVLDFYRKIPEDFVKQTSVGASLSLCAGIFMLVLFFIELFAFLSTSTETSVILDTNADTQLRINFNITLMDLHCDYAVVDVYDVLGTNTQNISKNIEKWQLDERGVRRIFSGRNREQKDIAHDTH 131          
BLAST of mRNA_P-wetherbeei_contig6104.1.1 vs. uniprot
Match: A0A7S2GV72_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GV72_9STRA)

HSP 1 Score: 142 bits (359), Expect = 5.670e-38
Identity = 70/126 (55.56%), Postives = 92/126 (73.02%), Query Frame = 1
Query:   13 LKNFDFYRKIPMDLTESTLQGSVLSFCALAFMLLLFLCELWAFLSPEVYSTVMIDSNKDTKLRINFNVTMLELSCDYASVDVLDVLGTNRVNVTKNIVKWHTDSEGRRMEFHGRNREQEDLVHDDH 390
            LK  DFYRKIP D  + T  G+ LS CA  FML+LF  ELWAFL+    ++V++D+N DT+LRINFN+TM++L+CD+ SVDV DVLGTN  N+TKNI KW  D  G +  F GRN+E +++ HD+H
Sbjct:    7 LKVLDFYRKIPEDFQKQTAVGASLSICAGLFMLILFFVELWAFLATTTDTSVILDTNSDTQLRINFNITMMDLACDFVSVDVYDVLGTNTQNMTKNIEKWQLDENGVKRIFQGRNKEVKEISHDEH 132          
BLAST of mRNA_P-wetherbeei_contig6104.1.1 vs. uniprot
Match: A0A1Z5JFU5_FISSO (Thioredoxin domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JFU5_FISSO)

HSP 1 Score: 140 bits (354), Expect = 3.680e-37
Identity = 67/126 (53.17%), Postives = 89/126 (70.63%), Query Frame = 1
Query:   13 LKNFDFYRKIPMDLTESTLQGSVLSFCALAFMLLLFLCELWAFLSPEVYSTVMIDSNKDTKLRINFNVTMLELSCDYASVDVLDVLGTNRVNVTKNIVKWHTDSEGRRMEFHGRNREQEDLVHDDH 390
            L + DFYR++P DLTE+T+ G+ +S CA+  M +LF  E  AF + E  +T+ +D N   ++R+NFN+TML+L CDY SVDV D LGTNR NVTKN+ KW  D EG+R  F GRNRE  +L HD+H
Sbjct:   14 LSSVDFYRRVPKDLTEATILGAFMSACAMIVMAVLFFSETLAFATTETVTTIAVDENTSPQIRLNFNITMLDLHCDYVSVDVWDALGTNRQNVTKNVDKWQLDEEGKRRIFSGRNREARELKHDEH 139          
BLAST of mRNA_P-wetherbeei_contig6104.1.1 vs. uniprot
Match: A0A7S1VFQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VFQ0_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.350e-36
Identity = 63/126 (50.00%), Postives = 88/126 (69.84%), Query Frame = 1
Query:   13 LKNFDFYRKIPMDLTESTLQGSVLSFCALAFMLLLFLCELWAFLSPEVYSTVMIDSNKDTKLRINFNVTMLELSCDYASVDVLDVLGTNRVNVTKNIVKWHTDSEGRRMEFHGRNREQEDLVHDDH 390
            + + DFYR++P DLTE+T  G+ +S  A+  M +LFL E  AF    + +++ +D N   +LR+NFN+TM++L CDY SVDV D LGTNR NVTKN+ KW  D++GRR  F GRNRE  ++ HD+H
Sbjct:   10 MSSVDFYRRVPKDLTEATALGAFMSIAAMVVMGVLFLSETLAFSRSNLATSITLDENTQPQLRLNFNITMMDLHCDYVSVDVWDALGTNRQNVTKNVEKWQLDNDGRRRIFSGRNRETREVKHDEH 135          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6104.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQ98_9STRA1.310e-5970.77Endoplasmic reticulum-golgi intermediate compartme... [more]
D8LEE9_ECTSI1.970e-5773.44Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A7S3JS36_9STRA1.080e-4560.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A4D9CME8_9STRA7.200e-4358.73Thioredoxin domain-containing protein n=2 Tax=Mono... [more]
A0A7S3ZRX9_9STRA8.030e-4261.11Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2GUZ1_9STRA2.330e-4055.56Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2RKA3_9STRA2.080e-3857.25Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2GV72_9STRA5.670e-3855.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1Z5JFU5_FISSO3.680e-3753.17Thioredoxin domain-containing protein n=2 Tax=Fist... [more]
A0A7S1VFQ0_9STRA1.350e-3650.00Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6104contigP-wetherbeei_contig6104:4..694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LEE9
PFAMsCOPIIcoated_ERV,ERGIC_N,Thioredoxin
Model size390
Max annot lvl2759|Eukaryota
KEGG koko:K20365,ko:K20367
Hectar predicted targeting categorysignal anchor
Exons2
Evalue3.23e-58
EggNOG OGsCOG0445@1|root,KOG2667@2759|Eukaryota
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-00_002040.1
Descriptionvesicle-mediated transport
Cds size390
COG categoryD
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.8490417-CDS-P-wetherbeei_contig6104:3..2951683186888.8490417-CDS-P-wetherbeei_contig6104:3..295Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6104 4..295 -
1683186888.8587224-CDS-P-wetherbeei_contig6104:596..6941683186888.8587224-CDS-P-wetherbeei_contig6104:596..694Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6104 597..694 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6104.1.1prot_P-wetherbeei_contig6104.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6104 4..694 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6104.1.1

>prot_P-wetherbeei_contig6104.1.1 ID=prot_P-wetherbeei_contig6104.1.1|Name=mRNA_P-wetherbeei_contig6104.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=130bp
MAPPLKNFDFYRKIPMDLTESTLQGSVLSFCALAFMLLLFLCELWAFLSP
EVYSTVMIDSNKDTKLRINFNVTMLELSCDYASVDVLDVLGTNRVNVTKN
IVKWHTDSEGRRMEFHGRNREQEDLVHDDH
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mRNA from alignment at P-wetherbeei_contig6104:4..694-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6104.1.1 ID=mRNA_P-wetherbeei_contig6104.1.1|Name=mRNA_P-wetherbeei_contig6104.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=691bp|location=Sequence derived from alignment at P-wetherbeei_contig6104:4..694- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACCACCATTGAAGAACTTCGATTTTTATAGGAAGATTCCGATGGA CCTGACCGAGTCGACATTGCAAGGCTCCGTTCTCTCCTTCTGTGCCCTGT GAGTCTGAGCCTTGCCGGTGCCCTCCGGCTTGCCGCAAGACCTTCGCTTT TCACATTATGTGTGTGATATAACTGTCGCGTACGCGAACATTCCGTTTGC ACGTCTTTTTTATCATTTGAAACGTTTTCCCTACCATACCGCTGGGCAAA AGAGGCTGCTCGACTTCCCCCACCGAGTGATGTATTAAACTTTTCTTTCT CTTCTCAACTTCACTGCCCTGGCTGTTCCTTTGTCTACCGCCCTATCGCC GCTGTCACACCCCGCTTCCCCGCCTTGCCCACCCAATCCCCCTCTGCAGC GCCTTCATGCTGCTGCTGTTCCTGTGTGAGCTGTGGGCGTTCCTGTCGCC CGAGGTGTACAGCACGGTGATGATCGACTCGAACAAGGACACGAAGCTGC GCATCAACTTCAACGTAACGATGCTGGAGCTATCATGCGACTACGCCAGT GTGGATGTGCTGGACGTGCTTGGGACGAACCGCGTCAACGTGACCAAGAA CATCGTCAAGTGGCACACCGACTCGGAGGGCCGCCGCATGGAGTTCCACG GTCGCAACCGCGAGCAGGAGGACCTCGTCCATGACGACCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6104:4..694-

>mRNA_P-wetherbeei_contig6104.1.1 ID=mRNA_P-wetherbeei_contig6104.1.1|Name=mRNA_P-wetherbeei_contig6104.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=390bp|location=Sequence derived from alignment at P-wetherbeei_contig6104:4..694- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCACCACCATTGAAGAACTTCGATTTTTATAGGAAGATTCCGATGGA
CCTGACCGAGTCGACATTGCAAGGCTCCGTTCTCTCCTTCTGTGCCCTCG
CCTTCATGCTGCTGCTGTTCCTGTGTGAGCTGTGGGCGTTCCTGTCGCCC
GAGGTGTACAGCACGGTGATGATCGACTCGAACAAGGACACGAAGCTGCG
CATCAACTTCAACGTAACGATGCTGGAGCTATCATGCGACTACGCCAGTG
TGGATGTGCTGGACGTGCTTGGGACGAACCGCGTCAACGTGACCAAGAAC
ATCGTCAAGTGGCACACCGACTCGGAGGGCCGCCGCATGGAGTTCCACGG
TCGCAACCGCGAGCAGGAGGACCTCGTCCATGACGACCAC
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