mRNA_P-wetherbeei_contig6100.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6100.1.1
Unique NamemRNA_P-wetherbeei_contig6100.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6100.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6100contigP-wetherbeei_contig6100:2572..3477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size797
Hectar predicted targeting categoryother localisation
Exons2
Cds size768
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.689177-UTR-P-wetherbeei_contig6100:2571..26001683186888.689177-UTR-P-wetherbeei_contig6100:2571..2600Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6100 2572..2600 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.7014196-CDS-P-wetherbeei_contig6100:2600..26811683186888.7014196-CDS-P-wetherbeei_contig6100:2600..2681Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6100 2601..2681 +
1683186888.7136471-CDS-P-wetherbeei_contig6100:2790..34771683186888.7136471-CDS-P-wetherbeei_contig6100:2790..3477Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6100 2791..3477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6100.1.1prot_P-wetherbeei_contig6100.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6100 2601..3477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6100.1.1

>prot_P-wetherbeei_contig6100.1.1 ID=prot_P-wetherbeei_contig6100.1.1|Name=mRNA_P-wetherbeei_contig6100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=256bp
MPPKGSKKKKAKTVASAQPAAAAAVAGPLAGLPSIASFFSKNTPAKAKPE
GEGGAALTAPGTPASPATLGSADIRSLAGHRDGASPSGKKATSSSTDGVI
DSEGEGEGASSDVDMVPAPRHAGKGKAAAARAAKKAAVLRTEDGKAVYFD
LSSEKETKEKDAAGVQPVPYAVALAAAGEDAEGKGDVVMCDAEGAAVLVA
EASSPSPATPDTAASSAAATDKSASPADKGASPGKRGREEDVEDTDVEIA
NIDSNG
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mRNA from alignment at P-wetherbeei_contig6100:2572..3477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6100.1.1 ID=mRNA_P-wetherbeei_contig6100.1.1|Name=mRNA_P-wetherbeei_contig6100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=906bp|location=Sequence derived from alignment at P-wetherbeei_contig6100:2572..3477+ (Phaeothamnion wetherbeei SAG_119_79)
ATTACAACAACAAAACGAGGCGAAAAGAGATGCCGCCGAAGGGAAGCAAG
AAGAAGAAAGCGAAGACCGTGGCGTCTGCACAGCCTGCTGCGGCTGCGGC
TGTTGCAGGGGTGAGTTTGATCCTGTTGTCTTGGAGATGCCCAAAACTCT
CGAGTTTGTCTTTGTGATCTTAAACAACCTCTTCCCCCCAATCCCTCGAC
TTTACCGCACATATAACAGCCACTTGCTGGCCTGCCGTCAATCGCGTCCT
TCTTCAGCAAGAACACTCCGGCCAAAGCAAAGCCTGAGGGTGAAGGCGGC
GCCGCGTTGACGGCACCTGGCACTCCCGCGAGCCCCGCGACGCTCGGATC
TGCCGATATTCGCAGCTTGGCGGGCCATCGTGATGGCGCGAGCCCTTCCG
GCAAGAAGGCGACGTCCTCTTCCACGGACGGGGTGATCGACAGCGAGGGC
GAGGGCGAGGGCGCCAGCAGCGACGTGGACATGGTCCCCGCGCCGCGGCA
TGCCGGCAAAGGCAAGGCTGCCGCCGCCCGGGCGGCGAAGAAGGCGGCGG
TGTTGCGGACGGAAGACGGCAAGGCCGTGTACTTCGACCTCAGCAGCGAG
AAGGAGACCAAGGAGAAGGACGCCGCAGGCGTCCAGCCGGTGCCCTACGC
CGTAGCGCTCGCAGCGGCGGGAGAGGACGCCGAAGGCAAGGGCGACGTGG
TCATGTGCGACGCCGAAGGCGCTGCAGTGCTCGTGGCAGAAGCGTCCTCT
CCGTCGCCGGCCACGCCCGATACAGCGGCGTCGTCGGCGGCGGCTACCGA
CAAGAGCGCCTCCCCCGCCGACAAAGGCGCGTCGCCGGGCAAGCGCGGAC
GCGAGGAAGACGTTGAGGACACGGATGTGGAAATTGCCAACATCGACAGC
AATGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6100:2572..3477+

>mRNA_P-wetherbeei_contig6100.1.1 ID=mRNA_P-wetherbeei_contig6100.1.1|Name=mRNA_P-wetherbeei_contig6100.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=768bp|location=Sequence derived from alignment at P-wetherbeei_contig6100:2572..3477+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGCCGAAGGGAAGCAAGAAGAAGAAAGCGAAGACCGTGGCGTCTGC
ACAGCCTGCTGCGGCTGCGGCTGTTGCAGGGCCACTTGCTGGCCTGCCGT
CAATCGCGTCCTTCTTCAGCAAGAACACTCCGGCCAAAGCAAAGCCTGAG
GGTGAAGGCGGCGCCGCGTTGACGGCACCTGGCACTCCCGCGAGCCCCGC
GACGCTCGGATCTGCCGATATTCGCAGCTTGGCGGGCCATCGTGATGGCG
CGAGCCCTTCCGGCAAGAAGGCGACGTCCTCTTCCACGGACGGGGTGATC
GACAGCGAGGGCGAGGGCGAGGGCGCCAGCAGCGACGTGGACATGGTCCC
CGCGCCGCGGCATGCCGGCAAAGGCAAGGCTGCCGCCGCCCGGGCGGCGA
AGAAGGCGGCGGTGTTGCGGACGGAAGACGGCAAGGCCGTGTACTTCGAC
CTCAGCAGCGAGAAGGAGACCAAGGAGAAGGACGCCGCAGGCGTCCAGCC
GGTGCCCTACGCCGTAGCGCTCGCAGCGGCGGGAGAGGACGCCGAAGGCA
AGGGCGACGTGGTCATGTGCGACGCCGAAGGCGCTGCAGTGCTCGTGGCA
GAAGCGTCCTCTCCGTCGCCGGCCACGCCCGATACAGCGGCGTCGTCGGC
GGCGGCTACCGACAAGAGCGCCTCCCCCGCCGACAAAGGCGCGTCGCCGG
GCAAGCGCGGACGCGAGGAAGACGTTGAGGACACGGATGTGGAAATTGCC
AACATCGACAGCAATGGC
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