mRNA_P-wetherbeei_contig61.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig61.1.1
Unique NamemRNA_P-wetherbeei_contig61.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig61.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig61contigP-wetherbeei_contig61:1563..2489 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size746
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003760.1
Cds size579
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.4099426-UTR-P-wetherbeei_contig61:1562..16441683186888.4099426-UTR-P-wetherbeei_contig61:1562..1644Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig61 1563..1644 +
1683186888.4338899-UTR-P-wetherbeei_contig61:2404..24891683186888.4338899-UTR-P-wetherbeei_contig61:2404..2489Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig61 2405..2489 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.418383-CDS-P-wetherbeei_contig61:1644..16501683186888.418383-CDS-P-wetherbeei_contig61:1644..1650Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig61 1645..1650 +
1683186888.4261322-CDS-P-wetherbeei_contig61:1831..24041683186888.4261322-CDS-P-wetherbeei_contig61:1831..2404Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig61 1832..2404 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig61.1.1prot_P-wetherbeei_contig61.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig61 1645..2404 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig61.1.1

>prot_P-wetherbeei_contig61.1.1 ID=prot_P-wetherbeei_contig61.1.1|Name=mRNA_P-wetherbeei_contig61.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
MTERQLSEGAGALLLGAGVMGFHFAYGMSALFDDYGLSPLQDSLLLATGC
VGLYAFVRVVCRLSGFTLAAVGSAYVLSRAPPAYWAKAKALSNHVIFEWL
RNNGDARLKEDAYWCLRLFCLLAVLSAVLMALLLLFKLVVYMMTALLAAV
LRMLSLAYDRGGRKEGKGKGGAAFTSVTRQRQGQVDCDEKQD*
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mRNA from alignment at P-wetherbeei_contig61:1563..2489+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig61.1.1 ID=mRNA_P-wetherbeei_contig61.1.1|Name=mRNA_P-wetherbeei_contig61.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=927bp|location=Sequence derived from alignment at P-wetherbeei_contig61:1563..2489+ (Phaeothamnion wetherbeei SAG_119_79)
TTGGCAATTGGGTGCGTCGCGCTGTACGCGTTCGTTCGCAAAGCCCATAT
TAACAGCGCCTGTGCCACCTGAAGAAGATCCCATGACGGTGAGCAAATTG
CAAAGGCTAACGACCAGCCATGCGTTATTTTATCCACGTCGCTCGTATGC
AGCGTTCCTTCGTGGATGTTTGTTTTCCAGCACTGCATTGCTTTCAGCCA
TTGCAGCAGGTAGAAGTTTCTTATTTTTCCTCTTAATCTGGCCGCTTCCT
GTTTTCTTTCGTCTCACAGGAGCGACAGCTCTCCGAGGGGGCAGGGGCGT
TACTTCTCGGCGCGGGAGTCATGGGGTTCCATTTTGCCTACGGCATGAGC
GCCCTCTTTGACGATTACGGCCTTTCCCCGTTGCAAGACTCGCTCCTGTT
GGCAACGGGATGCGTCGGACTGTACGCATTCGTTCGTGTGGTCTGCAGGC
TTTCCGGCTTCACCCTCGCCGCAGTAGGATCTGCTTACGTGCTTTCAAGG
GCGCCACCGGCGTATTGGGCGAAGGCTAAGGCACTGAGCAACCACGTCAT
CTTTGAGTGGCTTCGGAACAACGGCGACGCCCGCCTGAAGGAAGACGCCT
ACTGGTGCTTGCGGCTTTTCTGCCTGCTCGCCGTCCTGAGCGCGGTGCTT
ATGGCTCTTCTTCTTCTTTTCAAGCTGGTAGTCTACATGATGACGGCGCT
CCTGGCAGCGGTGCTGCGCATGCTGAGCCTTGCATACGACCGAGGGGGAA
GAAAGGAAGGGAAGGGCAAAGGTGGGGCGGCCTTCACAAGCGTAACAAGA
CAACGCCAGGGGCAAGTTGATTGCGATGAGAAGCAAGATTGATCACGCGC
TGTTTTTGCCATGTCCACGTCTGCATCAGAGAAGCCACCACGTGAGAACG
AATTAATCTAGCTTGAAACATAAGCCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig61:1563..2489+

>mRNA_P-wetherbeei_contig61.1.1 ID=mRNA_P-wetherbeei_contig61.1.1|Name=mRNA_P-wetherbeei_contig61.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig61:1563..2489+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACGGAGCGACAGCTCTCCGAGGGGGCAGGGGCGTTACTTCTCGGCGC
GGGAGTCATGGGGTTCCATTTTGCCTACGGCATGAGCGCCCTCTTTGACG
ATTACGGCCTTTCCCCGTTGCAAGACTCGCTCCTGTTGGCAACGGGATGC
GTCGGACTGTACGCATTCGTTCGTGTGGTCTGCAGGCTTTCCGGCTTCAC
CCTCGCCGCAGTAGGATCTGCTTACGTGCTTTCAAGGGCGCCACCGGCGT
ATTGGGCGAAGGCTAAGGCACTGAGCAACCACGTCATCTTTGAGTGGCTT
CGGAACAACGGCGACGCCCGCCTGAAGGAAGACGCCTACTGGTGCTTGCG
GCTTTTCTGCCTGCTCGCCGTCCTGAGCGCGGTGCTTATGGCTCTTCTTC
TTCTTTTCAAGCTGGTAGTCTACATGATGACGGCGCTCCTGGCAGCGGTG
CTGCGCATGCTGAGCCTTGCATACGACCGAGGGGGAAGAAAGGAAGGGAA
GGGCAAAGGTGGGGCGGCCTTCACAAGCGTAACAAGACAACGCCAGGGGC
AAGTTGATTGCGATGAGAAGCAAGATTGA
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