mRNA_P-wetherbeei_contig6092.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6092.1.1
Unique NamemRNA_P-wetherbeei_contig6092.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6092.1.1 vs. uniprot
Match: A0A835ZE06_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE06_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.400e-17
Identity = 48/130 (36.92%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:   10 CSKCGISKPVDQYGRNAHCAGGLQPHCKSCQSLITKKYNNTRTGFLKALIYHSKTAVQRRT--GRNLTSTLTEDKINTLIKAQHGKCAISGAVLVFKSFSDNQASVDRIKDNLGYIDGNCRLVCLEFNTA 393
            C+ CG+      Y    +  G  Q  C+SCQ +  + Y +TR GF   +  ++  A + R+  GR    TLT   I  + + Q  +C +SG  + F + SD QASV+R+ ++L Y   NCRL+CLEFNTA
Sbjct:   15 CTGCGVGYEASGY---YYANGNRQARCRSCQLVNLQAYYSTRVGFEHRMWNNTMKASRERSALGRASGHTLTFGDIEAMAREQQDRCYLSGHPMTFAARSDWQASVERLDNSLDYSRENCRLICLEFNTA 141
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BLAST of mRNA_P-wetherbeei_contig6092.1.1 vs. uniprot
Match: A0A6C0K3S1_9ZZZZ (Uncharacterized protein n=1 Tax=viral metagenome TaxID=1070528 RepID=A0A6C0K3S1_9ZZZZ)

HSP 1 Score: 69.7 bits (169), Expect = 3.140e-11
Identity = 43/128 (33.59%), Postives = 67/128 (52.34%), Query Frame = 1 
Query:    7 KCSKCGISKPVDQYGRNAHCAGGLQPHCKSCQSLITKKYNNTRTGFLKALIYHS--KTAVQRRTGRNLTSTLTEDKINTLIKAQHGKCAISGAVLVFKSFSDNQASVDRIKDNLGYIDGNCRLVCLEF 384
            +C +C   KP+ +  R        +  C SC      K+ N    +LK ++ ++  +T  + ++GR     +    I  L K Q+GKC ISG  +  K+ SD Q S+DR+ +N GY+ GN RL+CLEF
Sbjct:   93 QCPQCKEMKPLHENTRQQE----FKRLCISCG-----KHRNDDEHYLKHIVRNAQYRTIERNKSGRQHVFDIDIQYIEELWKGQNGKCYISGIAMQLKTTSDWQCSIDRVDNNKGYLKGNIRLICLEF 211
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BLAST of mRNA_P-wetherbeei_contig6092.1.1 vs. uniprot
Match: F4PNU4_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PNU4_CAVFA)

HSP 1 Score: 61.6 bits (148), Expect = 2.180e-8
Identity = 30/60 (50.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:  229 INTLIKAQHGKCAISGAVLVFKSFSDNQASVDRIKDNLGYIDGNCRLVCLEFNTAVKWSP 408
            ++ +I     +C +SGA L  K  S  QAS+DRI+D+  Y  GN R+VCLEFNT VKW P
Sbjct:   30 LDRIILKNGTRCDLSGAPLALKWRSHCQASLDRIRDHESYRKGNVRVVCLEFNTTVKWYP 89
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BLAST of mRNA_P-wetherbeei_contig6092.1.1 vs. uniprot
Match: A0A812V9D0_9DINO (NAD(P)(+)--arginine ADP-ribosyltransferase n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812V9D0_9DINO)

HSP 1 Score: 52.8 bits (125), Expect = 2.610e-5
Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 1 
Query:  121 YNNTRTGFLKALIYHSKTAVQRRTGRNLTSTLTEDKINTLIKAQHGKCAISGAVLVFKSFSDNQASVDRIKDNLGYIDGNCRLVCLEFNT 390
            YN T  G  K L   ++T  +RR G       T+  I  ++  Q G+C  SG  L +   +D   S++R+ +NLGY++GNC L+  EFNT
Sbjct:  600 YNRTLRGKSKLLAASAQTRSRRR-GEECEINYTD--ILQMLLEQQGRCFYSGIPLQWYPHTDWMMSLERLDNNLGYVEGNCVLIANEFNT 686
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6092.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZE06_9STRA1.400e-1736.92Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6C0K3S1_9ZZZZ3.140e-1133.59Uncharacterized protein n=1 Tax=viral metagenome T... [more]
F4PNU4_CAVFA2.180e-850.00Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
A0A812V9D0_9DINO2.610e-536.67NAD(P)(+)--arginine ADP-ribosyltransferase n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6092contigP-wetherbeei_contig6092:493..900 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog742727.HMPREF9447_04886
Model size408
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000137
EggNOG OGs2A8HC@1|root,30XJF@2|Bacteria,4PB11@976|Bacteroidetes,2FZSH@200643|Bacteroidia
Cds size408
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.1508243-CDS-P-wetherbeei_contig6092:492..9001683186888.1508243-CDS-P-wetherbeei_contig6092:492..900Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6092 493..900 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6092.1.1prot_P-wetherbeei_contig6092.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6092 493..900 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6092.1.1

>prot_P-wetherbeei_contig6092.1.1 ID=prot_P-wetherbeei_contig6092.1.1|Name=mRNA_P-wetherbeei_contig6092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=136bp
SKKCSKCGISKPVDQYGRNAHCAGGLQPHCKSCQSLITKKYNNTRTGFLK
ALIYHSKTAVQRRTGRNLTSTLTEDKINTLIKAQHGKCAISGAVLVFKSF
SDNQASVDRIKDNLGYIDGNCRLVCLEFNTAVKWSP
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mRNA from alignment at P-wetherbeei_contig6092:493..900+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6092.1.1 ID=mRNA_P-wetherbeei_contig6092.1.1|Name=mRNA_P-wetherbeei_contig6092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig6092:493..900+ (Phaeothamnion wetherbeei SAG_119_79)
TCAAAAAAGTGTTCAAAATGTGGGATATCAAAACCCGTGGATCAGTATGG
TCGCAATGCACACTGTGCAGGAGGCTTACAACCACATTGCAAATCATGTC
AGAGTCTTATCACAAAGAAGTACAACAATACGCGCACAGGATTCCTCAAG
GCATTGATCTACCATTCAAAGACGGCCGTGCAGCGCAGAACGGGAAGAAA
TCTGACATCAACTCTCACGGAAGACAAGATCAATACCCTGATCAAAGCTC
AACACGGAAAGTGTGCAATTTCCGGAGCGGTCCTTGTGTTCAAGAGTTTT
TCAGACAACCAAGCAAGTGTGGATCGGATCAAGGACAATTTGGGATACAT
TGACGGAAATTGTCGCCTCGTTTGCCTGGAGTTCAATACCGCTGTAAAGT
GGTCTCCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6092:493..900+

>mRNA_P-wetherbeei_contig6092.1.1 ID=mRNA_P-wetherbeei_contig6092.1.1|Name=mRNA_P-wetherbeei_contig6092.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=408bp|location=Sequence derived from alignment at P-wetherbeei_contig6092:493..900+ (Phaeothamnion wetherbeei SAG_119_79)
TCAAAAAAGTGTTCAAAATGTGGGATATCAAAACCCGTGGATCAGTATGG
TCGCAATGCACACTGTGCAGGAGGCTTACAACCACATTGCAAATCATGTC
AGAGTCTTATCACAAAGAAGTACAACAATACGCGCACAGGATTCCTCAAG
GCATTGATCTACCATTCAAAGACGGCCGTGCAGCGCAGAACGGGAAGAAA
TCTGACATCAACTCTCACGGAAGACAAGATCAATACCCTGATCAAAGCTC
AACACGGAAAGTGTGCAATTTCCGGAGCGGTCCTTGTGTTCAAGAGTTTT
TCAGACAACCAAGCAAGTGTGGATCGGATCAAGGACAATTTGGGATACAT
TGACGGAAATTGTCGCCTCGTTTGCCTGGAGTTCAATACCGCTGTAAAGT
GGTCTCCT
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