mRNA_P-wetherbeei_contig6086.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6086.1.1
Unique NamemRNA_P-wetherbeei_contig6086.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6086.1.1 vs. uniprot
Match: A0A015JSN2_RHIIW (DUF659 domain-containing protein n=1 Tax=Rhizophagus irregularis (strain DAOM 197198w) TaxID=1432141 RepID=A0A015JSN2_RHIIW)

HSP 1 Score: 52.0 bits (123), Expect = 9.350e-7
Identity = 27/72 (37.50%), Postives = 42/72 (58.33%), Query Frame = 1 
Query:    1 IDKIGPEKVAAICTDGAAAMTKGRRDLVSQPKYRHILDLRCQMHTFNLLYGSFFRHPVPKSIMRTVQQIVMF 216
            + KIGP+K AAI TD AA     +  ++S+ KY  I+++ C  H  NL+    F H  PK ++++  +IV F
Sbjct:   13 LQKIGPDKFAAIVTDNAANCALAQ-SIISE-KYPFIVNIHCIAHCVNLITKDVFEHNFPKKVLKSCNKIVKF 82
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BLAST of mRNA_P-wetherbeei_contig6086.1.1 vs. uniprot
Match: A0A2Z6QBI1_9GLOM (BED-type domain-containing protein n=5 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QBI1_9GLOM)

HSP 1 Score: 52.0 bits (123), Expect = 6.310e-6
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:    1 IDKIGPEKVAAICTDGAAAMTKGRRDLVSQPKYRHILDLRCQMHTFNLLYGSFFRHPVPKSIMRTVQQIVMF 216
            + KIGP+K AA+ TD AA     R  ++S+ KY  I++ RC  H  NL+      H  PK ++++  +IV F
Sbjct:  252 LQKIGPDKFAAVVTDNAANCALAR-SIISE-KYPFIVNTRCIAHCVNLITKDVLEHNFPKKVLKSCNEIVKF 321
[Close]
BLAST of mRNA_P-wetherbeei_contig6086.1.1 vs. uniprot
Match: A0A8H3MCW8_9GLOM (Ribonuclease H-like domain-containing protein n=3 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3MCW8_9GLOM)

HSP 1 Score: 52.0 bits (123), Expect = 6.380e-6
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:    1 IDKIGPEKVAAICTDGAAAMTKGRRDLVSQPKYRHILDLRCQMHTFNLLYGSFFRHPVPKSIMRTVQQIVMF 216
            + KIGP+K AA+ TD AA     R  ++S+ KY  I++ RC  H  NL+      H  PK ++++  +IV F
Sbjct:  431 LQKIGPDKFAAVVTDNAANCALAR-SIISE-KYPFIVNTRCIAHCVNLITKDVLEHNFPKKVLKSCNEIVKF 500
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6086.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A015JSN2_RHIIW9.350e-737.50DUF659 domain-containing protein n=1 Tax=Rhizophag... [more]
A0A2Z6QBI1_9GLOM6.310e-637.50BED-type domain-containing protein n=5 Tax=Rhizoph... [more]
A0A8H3MCW8_9GLOM6.380e-637.50Ribonuclease H-like domain-containing protein n=3 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6086contigP-wetherbeei_contig6086:263..490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog588596.U9TVW1
PFAMsDUF659
Model size228
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.97e-05
EggNOG OGs2E1UA@1|root,2S94A@2759|Eukaryota,3A9M8@33154|Opisthokonta
Cds size228
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186887.8774652-CDS-P-wetherbeei_contig6086:262..4901683186887.8774652-CDS-P-wetherbeei_contig6086:262..490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6086 263..490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6086.1.1prot_P-wetherbeei_contig6086.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6086 263..490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6086.1.1

>prot_P-wetherbeei_contig6086.1.1 ID=prot_P-wetherbeei_contig6086.1.1|Name=mRNA_P-wetherbeei_contig6086.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=76bp
IDKIGPEKVAAICTDGAAAMTKGRRDLVSQPKYRHILDLRCQMHTFNLLY
GSFFRHPVPKSIMRTVQQIVMFVRCS
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mRNA from alignment at P-wetherbeei_contig6086:263..490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6086.1.1 ID=mRNA_P-wetherbeei_contig6086.1.1|Name=mRNA_P-wetherbeei_contig6086.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig6086:263..490+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGACAAGATCGGCCCGGAAAAGGTTGCGGCCATCTGCACCGACGGGGC
GGCAGCGATGACTAAGGGCCGTCGGGATCTAGTGTCGCAGCCCAAGTACC
GCCACATCCTGGATCTCCGCTGCCAGATGCACACCTTCAACCTGCTGTAC
GGCTCATTCTTCAGGCATCCCGTCCCCAAGAGCATCATGCGGACGGTCCA
GCAGATCGTAATGTTTGTGCGTTGCTCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6086:263..490+

>mRNA_P-wetherbeei_contig6086.1.1 ID=mRNA_P-wetherbeei_contig6086.1.1|Name=mRNA_P-wetherbeei_contig6086.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=228bp|location=Sequence derived from alignment at P-wetherbeei_contig6086:263..490+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGACAAGATCGGCCCGGAAAAGGTTGCGGCCATCTGCACCGACGGGGC
GGCAGCGATGACTAAGGGCCGTCGGGATCTAGTGTCGCAGCCCAAGTACC
GCCACATCCTGGATCTCCGCTGCCAGATGCACACCTTCAACCTGCTGTAC
GGCTCATTCTTCAGGCATCCCGTCCCCAAGAGCATCATGCGGACGGTCCA
GCAGATCGTAATGTTTGTGCGTTGCTCG
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